Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00225 and HGI48_RS00230 are separated by 101 nucleotidesHGI48_RS00230 and HGI48_RS00235 are separated by 2 nucleotidesHGI48_RS00235 and HGI48_RS00240 are separated by 28 nucleotides HGI48_RS00225: HGI48_RS00225 - urea carboxylase, at 56,977 to 60,570 _RS00225 HGI48_RS00230: HGI48_RS00230 - urea carboxylase-associated family protein, at 60,672 to 61,307 _RS00230 HGI48_RS00235: HGI48_RS00235 - urea carboxylase-associated family protein, at 61,310 to 62,029 _RS00235 HGI48_RS00240: HGI48_RS00240 - ATP-binding cassette domain-containing protein, at 62,058 to 62,834 _RS00240 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.741 kb on + strand, within HGI48_RS00225at 59.742 kb on - strand, within HGI48_RS00225at 59.747 kb on + strandat 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.747 kb on + strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.748 kb on - strand, within HGI48_RS00225at 59.752 kb on + strand, within HGI48_RS00225at 59.772 kb on - strand, within HGI48_RS00225at 59.810 kb on - strand, within HGI48_RS00225at 59.810 kb on - strand, within HGI48_RS00225at 59.935 kb on + strand, within HGI48_RS00225at 60.103 kb on + strand, within HGI48_RS00225at 60.104 kb on - strand, within HGI48_RS00225at 60.373 kb on + strandat 60.374 kb on - strandat 60.374 kb on - strandat 60.374 kb on - strandat 60.392 kb on + strandat 60.392 kb on + strandat 60.393 kb on - strandat 60.393 kb on - strandat 60.393 kb on - strandat 60.393 kb on - strandat 60.477 kb on - strandat 60.523 kb on - strandat 60.523 kb on - strandat 60.556 kb on + strandat 60.556 kb on + strandat 60.557 kb on - strandat 60.557 kb on - strandat 60.583 kb on + strandat 60.584 kb on - strandat 60.584 kb on - strandat 60.746 kb on + strand, within HGI48_RS00230at 60.746 kb on + strand, within HGI48_RS00230at 60.747 kb on - strand, within HGI48_RS00230at 60.756 kb on + strand, within HGI48_RS00230at 60.756 kb on + strand, within HGI48_RS00230at 60.756 kb on + strand, within HGI48_RS00230at 60.756 kb on + strand, within HGI48_RS00230at 60.756 kb on + strand, within HGI48_RS00230at 60.756 kb on + strand, within HGI48_RS00230at 60.757 kb on - strand, within HGI48_RS00230at 60.757 kb on - strand, within HGI48_RS00230at 60.757 kb on - strand, within HGI48_RS00230at 60.757 kb on - strand, within HGI48_RS00230at 60.757 kb on - strandat 60.784 kb on + strand, within HGI48_RS00230at 60.784 kb on + strand, within HGI48_RS00230at 60.784 kb on + strand, within HGI48_RS00230at 60.785 kb on - strand, within HGI48_RS00230at 60.785 kb on - strand, within HGI48_RS00230at 60.785 kb on - strand, within HGI48_RS00230at 60.804 kb on - strand, within HGI48_RS00230at 60.804 kb on - strand, within HGI48_RS00230at 61.011 kb on - strand, within HGI48_RS00230at 61.159 kb on + strand, within HGI48_RS00230at 61.160 kb on - strandat 61.160 kb on - strand, within HGI48_RS00230at 61.184 kb on + strand, within HGI48_RS00230at 61.184 kb on + strand, within HGI48_RS00230at 61.185 kb on - strand, within HGI48_RS00230at 61.185 kb on - strand, within HGI48_RS00230at 61.202 kb on + strand, within HGI48_RS00230at 61.203 kb on - strand, within HGI48_RS00230at 61.203 kb on - strand, within HGI48_RS00230at 61.203 kb on - strand, within HGI48_RS00230at 61.339 kb on - strandat 61.341 kb on + strandat 61.341 kb on + strandat 61.341 kb on + strandat 61.342 kb on - strandat 61.342 kb on - strandat 61.342 kb on - strandat 61.342 kb on - strandat 61.502 kb on - strand, within HGI48_RS00235at 61.635 kb on + strand, within HGI48_RS00235at 61.635 kb on + strand, within HGI48_RS00235at 61.636 kb on - strand, within HGI48_RS00235at 61.702 kb on - strand, within HGI48_RS00235at 61.702 kb on - strand, within HGI48_RS00235at 61.802 kb on - strand, within HGI48_RS00235at 61.802 kb on - strand, within HGI48_RS00235at 61.819 kb on - strand, within HGI48_RS00235at 61.881 kb on + strand, within HGI48_RS00235at 61.882 kb on - strand, within HGI48_RS00235at 61.908 kb on + strand, within HGI48_RS00235at 61.908 kb on + strand, within HGI48_RS00235at 61.909 kb on - strand, within HGI48_RS00235at 61.909 kb on - strand, within HGI48_RS00235at 61.909 kb on - strand, within HGI48_RS00235at 61.909 kb on - strand, within HGI48_RS00235at 61.909 kb on - strand, within HGI48_RS00235at 61.909 kb on - strand, within HGI48_RS00235at 62.016 kb on + strandat 62.041 kb on + strandat 62.041 kb on + strandat 62.041 kb on + strandat 62.041 kb on + strandat 62.041 kb on + strandat 62.042 kb on - strandat 62.042 kb on - strandat 62.042 kb on - strandat 62.042 kb on - strandat 62.042 kb on - strandat 62.042 kb on - strandat 62.042 kb on - strandat 62.137 kb on + strand, within HGI48_RS00240at 62.137 kb on + strand, within HGI48_RS00240at 62.137 kb on + strand, within HGI48_RS00240at 62.137 kb on + strand, within HGI48_RS00240at 62.137 kb on + strand, within HGI48_RS00240at 62.137 kb on + strand, within HGI48_RS00240at 62.137 kb on + strand, within HGI48_RS00240at 62.138 kb on - strandat 62.138 kb on - strandat 62.277 kb on + strandat 62.278 kb on - strand, within HGI48_RS00240

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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59,741 + HGI48_RS00225 0.77 -0.8
59,742 - HGI48_RS00225 0.77 +0.1
59,747 + +0.4
59,747 + HGI48_RS00225 0.77 -0.8
59,747 + HGI48_RS00225 0.77 -0.5
59,747 + HGI48_RS00225 0.77 +1.0
59,747 + HGI48_RS00225 0.77 -1.6
59,747 + HGI48_RS00225 0.77 +0.0
59,747 + HGI48_RS00225 0.77 -1.6
59,747 + HGI48_RS00225 0.77 -0.2
59,747 + HGI48_RS00225 0.77 +0.3
59,747 + HGI48_RS00225 0.77 -1.1
59,747 + HGI48_RS00225 0.77 -0.7
59,747 + HGI48_RS00225 0.77 -1.3
59,747 + HGI48_RS00225 0.77 +0.3
59,747 + HGI48_RS00225 0.77 -1.0
59,747 + HGI48_RS00225 0.77 +0.4
59,748 - HGI48_RS00225 0.77 +0.3
59,748 - HGI48_RS00225 0.77 +0.5
59,748 - HGI48_RS00225 0.77 -0.5
59,748 - HGI48_RS00225 0.77 +0.0
59,748 - HGI48_RS00225 0.77 +0.7
59,748 - HGI48_RS00225 0.77 -0.2
59,748 - HGI48_RS00225 0.77 -1.0
59,748 - HGI48_RS00225 0.77 -0.8
59,748 - HGI48_RS00225 0.77 +0.8
59,752 + HGI48_RS00225 0.77 +0.3
59,772 - HGI48_RS00225 0.78 -0.3
59,810 - HGI48_RS00225 0.79 -1.6
59,810 - HGI48_RS00225 0.79 +0.0
59,935 + HGI48_RS00225 0.82 -1.3
60,103 + HGI48_RS00225 0.87 +0.0
60,104 - HGI48_RS00225 0.87 +0.2
60,373 + -0.1
60,374 - +0.0
60,374 - +2.2
60,374 - -0.6
60,392 + +1.3
60,392 + +1.5
60,393 - +0.4
60,393 - -0.6
60,393 - +0.7
60,393 - +0.0
60,477 - -0.3
60,523 - +0.0
60,523 - +0.4
60,556 + -1.6
60,556 + -0.1
60,557 - +0.3
60,557 - -1.1
60,583 + -0.6
60,584 - -0.5
60,584 - +2.3
60,746 + HGI48_RS00230 0.12 -0.6
60,746 + HGI48_RS00230 0.12 -0.7
60,747 - HGI48_RS00230 0.12 -0.3
60,756 + HGI48_RS00230 0.13 -1.0
60,756 + HGI48_RS00230 0.13 -0.1
60,756 + HGI48_RS00230 0.13 +0.8
60,756 + HGI48_RS00230 0.13 +0.3
60,756 + HGI48_RS00230 0.13 -0.4
60,756 + HGI48_RS00230 0.13 -1.0
60,757 - HGI48_RS00230 0.13 -1.0
60,757 - HGI48_RS00230 0.13 +1.0
60,757 - HGI48_RS00230 0.13 +0.3
60,757 - HGI48_RS00230 0.13 -0.8
60,757 - +0.4
60,784 + HGI48_RS00230 0.18 -2.0
60,784 + HGI48_RS00230 0.18 -1.6
60,784 + HGI48_RS00230 0.18 +0.2
60,785 - HGI48_RS00230 0.18 -1.0
60,785 - HGI48_RS00230 0.18 -2.8
60,785 - HGI48_RS00230 0.18 +0.2
60,804 - HGI48_RS00230 0.21 -2.0
60,804 - HGI48_RS00230 0.21 +0.0
61,011 - HGI48_RS00230 0.53 +0.8
61,159 + HGI48_RS00230 0.77 -2.0
61,160 - +3.0
61,160 - HGI48_RS00230 0.77 -0.3
61,184 + HGI48_RS00230 0.81 -0.6
61,184 + HGI48_RS00230 0.81 +0.0
61,185 - HGI48_RS00230 0.81 +0.5
61,185 - HGI48_RS00230 0.81 +0.0
61,202 + HGI48_RS00230 0.83 -0.3
61,203 - HGI48_RS00230 0.83 -0.6
61,203 - HGI48_RS00230 0.83 +0.2
61,203 - HGI48_RS00230 0.83 -0.2
61,339 - -0.8
61,341 + +0.0
61,341 + +0.0
61,341 + +1.3
61,342 - -1.6
61,342 - -1.6
61,342 - +0.5
61,342 - -1.0
61,502 - HGI48_RS00235 0.27 +0.2
61,635 + HGI48_RS00235 0.45 -2.3
61,635 + HGI48_RS00235 0.45 +1.3
61,636 - HGI48_RS00235 0.45 +0.0
61,702 - HGI48_RS00235 0.54 +1.6
61,702 - HGI48_RS00235 0.54 +0.1
61,802 - HGI48_RS00235 0.68 +0.8
61,802 - HGI48_RS00235 0.68 +0.1
61,819 - HGI48_RS00235 0.71 -0.9
61,881 + HGI48_RS00235 0.79 +0.3
61,882 - HGI48_RS00235 0.79 -1.6
61,908 + HGI48_RS00235 0.83 +0.0
61,908 + HGI48_RS00235 0.83 -1.3
61,909 - HGI48_RS00235 0.83 +0.3
61,909 - HGI48_RS00235 0.83 -1.3
61,909 - HGI48_RS00235 0.83 +0.5
61,909 - HGI48_RS00235 0.83 +0.0
61,909 - HGI48_RS00235 0.83 +0.0
61,909 - HGI48_RS00235 0.83 -0.3
62,016 + +0.0
62,041 + +0.2
62,041 + +0.0
62,041 + +0.1
62,041 + -2.9
62,041 + -0.4
62,042 - -1.3
62,042 - +0.7
62,042 - +0.3
62,042 - +1.0
62,042 - -0.6
62,042 - -1.1
62,042 - +1.0
62,137 + HGI48_RS00240 0.10 -1.1
62,137 + HGI48_RS00240 0.10 -0.3
62,137 + HGI48_RS00240 0.10 +0.0
62,137 + HGI48_RS00240 0.10 -1.2
62,137 + HGI48_RS00240 0.10 -0.5
62,137 + HGI48_RS00240 0.10 -1.1
62,137 + HGI48_RS00240 0.10 -0.4
62,138 - +1.0
62,138 - +0.4
62,277 + +1.0
62,278 - HGI48_RS00240 0.28 -1.3

Or see this region's nucleotide sequence