Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00210 and HGI48_RS00215 are separated by 9 nucleotides HGI48_RS00215 and HGI48_RS00220 are separated by 588 nucleotides
HGI48_RS00210: HGI48_RS00210 - glycine--tRNA ligase subunit alpha, at 52,285 to 53,199
_RS00210
HGI48_RS00215: HGI48_RS00215 - glycine--tRNA ligase subunit beta, at 53,209 to 55,278
_RS00215
HGI48_RS00220: HGI48_RS00220 - alpha/beta hydrolase, at 55,867 to 56,637
_RS00220
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.214 kb on + strand at 52.214 kb on + strand at 52.214 kb on + strand at 52.215 kb on - strand at 52.215 kb on - strand at 52.215 kb on - strand at 52.215 kb on - strand at 52.216 kb on + strand at 52.216 kb on + strand at 52.216 kb on + strand at 52.216 kb on + strand at 52.234 kb on + strand at 52.236 kb on + strand at 52.236 kb on + strand at 55.276 kb on + strand at 55.301 kb on + strand at 55.302 kb on - strand at 55.305 kb on + strand at 55.310 kb on + strand at 55.311 kb on - strand at 55.322 kb on - strand at 55.322 kb on - strand at 55.336 kb on + strand at 55.336 kb on + strand at 55.337 kb on - strand at 55.341 kb on + strand at 55.341 kb on + strand at 55.341 kb on + strand at 55.342 kb on - strand at 55.342 kb on - strand at 55.342 kb on - strand at 55.342 kb on - strand at 55.353 kb on + strand at 55.354 kb on - strand at 55.482 kb on + strand at 55.541 kb on - strand at 55.546 kb on - strand at 55.633 kb on + strand at 55.743 kb on - strand at 55.743 kb on - strand at 55.762 kb on + strand at 55.799 kb on - strand at 55.821 kb on + strand at 55.905 kb on - strand at 55.974 kb on + strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 56.004 kb on + strand, within HGI48_RS00220 at 56.005 kb on - strand, within HGI48_RS00220 at 56.008 kb on + strand, within HGI48_RS00220 at 56.061 kb on + strand, within HGI48_RS00220 at 56.061 kb on + strand at 56.062 kb on - strand, within HGI48_RS00220 at 56.062 kb on - strand, within HGI48_RS00220 at 56.067 kb on + strand, within HGI48_RS00220 at 56.068 kb on - strand, within HGI48_RS00220 at 56.068 kb on - strand, within HGI48_RS00220 at 56.079 kb on - strand, within HGI48_RS00220 at 56.080 kb on + strand, within HGI48_RS00220 at 56.080 kb on + strand, within HGI48_RS00220 at 56.080 kb on + strand, within HGI48_RS00220 at 56.109 kb on - strand at 56.109 kb on - strand at 56.109 kb on - strand, within HGI48_RS00220 at 56.228 kb on + strand at 56.229 kb on - strand, within HGI48_RS00220 at 56.256 kb on + strand, within HGI48_RS00220 at 56.256 kb on + strand at 56.257 kb on - strand, within HGI48_RS00220 at 56.260 kb on - strand, within HGI48_RS00220 at 56.278 kb on - strand, within HGI48_RS00220
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 52,214 + -0.8 52,214 + +0.3 52,214 + +0.7 52,215 - +0.6 52,215 - -1.3 52,215 - -0.9 52,215 - -0.1 52,216 + -1.8 52,216 + -0.3 52,216 + -2.4 52,216 + -0.1 52,234 + +0.0 52,236 + -1.3 52,236 + +0.3 55,276 + -0.3 55,301 + +0.0 55,302 - +1.0 55,305 + -0.8 55,310 + +1.0 55,311 - -1.6 55,322 - +0.0 55,322 - +1.5 55,336 + +0.0 55,336 + +1.6 55,337 - +0.0 55,341 + -0.2 55,341 + -0.6 55,341 + -2.2 55,342 - -1.0 55,342 - +1.6 55,342 - -1.1 55,342 - +0.3 55,353 + -0.8 55,354 - +0.6 55,482 + +0.5 55,541 - +0.2 55,546 - +0.3 55,633 + -0.6 55,743 - -0.6 55,743 - +0.1 55,762 + +0.4 55,799 - +1.0 55,821 + -0.0 55,905 - +1.6 55,974 + HGI48_RS00220 0.14 +1.0 55,982 - HGI48_RS00220 0.15 -0.4 55,982 - HGI48_RS00220 0.15 +0.1 55,982 - HGI48_RS00220 0.15 -0.4 55,982 - HGI48_RS00220 0.15 -0.4 56,004 + HGI48_RS00220 0.18 -0.7 56,005 - HGI48_RS00220 0.18 +0.8 56,008 + HGI48_RS00220 0.18 +1.1 56,061 + HGI48_RS00220 0.25 +0.7 56,061 + +1.4 56,062 - HGI48_RS00220 0.25 -1.4 56,062 - HGI48_RS00220 0.25 -0.6 56,067 + HGI48_RS00220 0.26 -1.6 56,068 - HGI48_RS00220 0.26 +0.5 56,068 - HGI48_RS00220 0.26 -0.8 56,079 - HGI48_RS00220 0.27 -1.0 56,080 + HGI48_RS00220 0.28 +0.3 56,080 + HGI48_RS00220 0.28 +0.3 56,080 + HGI48_RS00220 0.28 +0.4 56,109 - +0.4 56,109 - +2.0 56,109 - HGI48_RS00220 0.31 -0.6 56,228 + +0.0 56,229 - HGI48_RS00220 0.47 +0.0 56,256 + HGI48_RS00220 0.50 +0.5 56,256 + +1.4 56,257 - HGI48_RS00220 0.51 -0.2 56,260 - HGI48_RS00220 0.51 +0.4 56,278 - HGI48_RS00220 0.53 +0.4
Or see this region's nucleotide sequence