Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00170 and HGI48_RS00175 are separated by 101 nucleotides HGI48_RS00175 and HGI48_RS00180 are separated by 656 nucleotides
HGI48_RS00170: HGI48_RS00170 - aldose 1-epimerase family protein, at 43,899 to 45,107
_RS00170
HGI48_RS00175: HGI48_RS00175 - glyoxylate/hydroxypyruvate reductase GhrB, at 45,209 to 46,171
_RS00175
HGI48_RS00180: HGI48_RS00180 - RNA-directed DNA polymerase, at 46,828 to 47,766
_RS00180
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 44.212 kb on + strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.350 kb on - strand at 44.375 kb on + strand, within HGI48_RS00170 at 44.421 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.575 kb on + strand, within HGI48_RS00170 at 44.575 kb on + strand, within HGI48_RS00170 at 44.575 kb on + strand, within HGI48_RS00170 at 44.576 kb on - strand, within HGI48_RS00170 at 44.580 kb on + strand, within HGI48_RS00170 at 44.581 kb on - strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.698 kb on - strand, within HGI48_RS00170 at 44.698 kb on - strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.735 kb on + strand, within HGI48_RS00170 at 44.736 kb on - strand, within HGI48_RS00170 at 44.736 kb on - strand, within HGI48_RS00170 at 44.883 kb on + strand, within HGI48_RS00170 at 44.883 kb on + strand, within HGI48_RS00170 at 44.884 kb on - strand, within HGI48_RS00170 at 44.884 kb on - strand, within HGI48_RS00170 at 44.913 kb on + strand, within HGI48_RS00170 at 44.913 kb on + strand, within HGI48_RS00170 at 44.914 kb on - strand, within HGI48_RS00170 at 44.978 kb on + strand, within HGI48_RS00170 at 44.979 kb on - strand, within HGI48_RS00170 at 44.997 kb on + strand at 44.997 kb on + strand at 44.997 kb on + strand at 44.998 kb on - strand at 45.120 kb on + strand at 45.120 kb on + strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.141 kb on - strand at 45.146 kb on + strand at 45.146 kb on + strand at 45.147 kb on - strand at 45.147 kb on - strand at 45.179 kb on - strand at 45.179 kb on - strand at 45.179 kb on - strand at 45.186 kb on - strand at 45.186 kb on - strand at 45.211 kb on - strand at 45.424 kb on + strand, within HGI48_RS00175 at 45.425 kb on - strand, within HGI48_RS00175 at 45.664 kb on - strand, within HGI48_RS00175 at 45.677 kb on - strand, within HGI48_RS00175 at 45.737 kb on - strand, within HGI48_RS00175 at 45.742 kb on + strand at 45.742 kb on + strand, within HGI48_RS00175 at 45.743 kb on - strand, within HGI48_RS00175 at 45.743 kb on - strand, within HGI48_RS00175 at 45.749 kb on - strand, within HGI48_RS00175 at 45.755 kb on + strand, within HGI48_RS00175 at 45.755 kb on + strand, within HGI48_RS00175 at 45.755 kb on + strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.764 kb on - strand, within HGI48_RS00175 at 45.890 kb on + strand, within HGI48_RS00175 at 45.890 kb on + strand, within HGI48_RS00175 at 45.890 kb on + strand, within HGI48_RS00175 at 45.890 kb on + strand at 45.902 kb on - strand, within HGI48_RS00175 at 46.005 kb on + strand at 46.005 kb on + strand, within HGI48_RS00175 at 46.005 kb on + strand, within HGI48_RS00175 at 46.021 kb on + strand, within HGI48_RS00175 at 46.022 kb on - strand, within HGI48_RS00175 at 46.235 kb on + strand at 46.236 kb on - strand at 46.279 kb on + strand at 46.279 kb on + strand at 46.322 kb on - strand at 46.332 kb on - strand at 46.332 kb on - strand at 46.408 kb on + strand at 46.408 kb on + strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.416 kb on + strand at 46.416 kb on + strand at 46.416 kb on + strand at 46.416 kb on + strand at 46.417 kb on - strand at 46.417 kb on - strand at 46.449 kb on - strand at 46.543 kb on - strand at 46.553 kb on - strand at 46.554 kb on + strand at 46.555 kb on - strand at 46.655 kb on + strand at 46.656 kb on - strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.693 kb on - strand at 46.701 kb on + strand at 46.702 kb on - strand at 46.705 kb on + strand at 46.771 kb on + strand at 46.775 kb on - strand at 46.803 kb on + strand at 46.815 kb on + strand at 46.816 kb on - strand at 46.817 kb on + strand at 46.817 kb on + strand at 46.859 kb on + strand at 46.859 kb on + strand at 46.859 kb on + strand at 46.880 kb on + strand at 46.880 kb on + strand at 46.881 kb on - strand at 46.881 kb on - strand at 46.888 kb on + strand at 46.888 kb on + strand at 46.912 kb on + strand at 46.912 kb on + strand at 46.913 kb on - strand at 46.913 kb on - strand at 46.971 kb on + strand at 46.971 kb on + strand at 46.980 kb on + strand, within HGI48_RS00180 at 46.980 kb on + strand, within HGI48_RS00180 at 47.003 kb on + strand, within HGI48_RS00180 at 47.003 kb on + strand, within HGI48_RS00180 at 47.003 kb on + strand, within HGI48_RS00180 at 47.037 kb on + strand, within HGI48_RS00180 at 47.038 kb on - strand, within HGI48_RS00180 at 47.044 kb on + strand, within HGI48_RS00180 at 47.055 kb on + strand, within HGI48_RS00180 at 47.070 kb on + strand, within HGI48_RS00180 at 47.098 kb on + strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.145 kb on + strand at 47.146 kb on - strand, within HGI48_RS00180 at 47.146 kb on - strand, within HGI48_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 44,212 + HGI48_RS00170 0.26 -0.5 44,241 - HGI48_RS00170 0.28 +0.3 44,241 - HGI48_RS00170 0.28 +1.2 44,349 + HGI48_RS00170 0.37 -0.3 44,349 + HGI48_RS00170 0.37 -1.0 44,350 - +0.4 44,375 + HGI48_RS00170 0.39 -0.8 44,421 + HGI48_RS00170 0.43 -2.0 44,499 + HGI48_RS00170 0.50 -0.4 44,499 + HGI48_RS00170 0.50 -1.8 44,499 + HGI48_RS00170 0.50 -0.6 44,499 + HGI48_RS00170 0.50 -0.3 44,499 + HGI48_RS00170 0.50 -0.2 44,500 - HGI48_RS00170 0.50 -1.8 44,500 - HGI48_RS00170 0.50 +0.8 44,500 - HGI48_RS00170 0.50 +0.6 44,500 - HGI48_RS00170 0.50 -0.4 44,503 + HGI48_RS00170 0.50 -2.4 44,503 + HGI48_RS00170 0.50 -3.0 44,503 + HGI48_RS00170 0.50 -1.0 44,575 + HGI48_RS00170 0.56 -1.8 44,575 + HGI48_RS00170 0.56 -1.0 44,575 + HGI48_RS00170 0.56 +0.4 44,576 - HGI48_RS00170 0.56 -0.2 44,580 + HGI48_RS00170 0.56 +0.7 44,581 - HGI48_RS00170 0.56 -0.8 44,697 + HGI48_RS00170 0.66 -1.8 44,697 + HGI48_RS00170 0.66 -0.7 44,697 + HGI48_RS00170 0.66 -1.1 44,697 + HGI48_RS00170 0.66 +0.0 44,697 + HGI48_RS00170 0.66 -1.7 44,698 - HGI48_RS00170 0.66 +1.0 44,698 - HGI48_RS00170 0.66 -0.2 44,699 + HGI48_RS00170 0.66 -0.6 44,699 + HGI48_RS00170 0.66 -0.8 44,699 + HGI48_RS00170 0.66 -1.0 44,699 + HGI48_RS00170 0.66 +0.0 44,699 + HGI48_RS00170 0.66 +1.2 44,699 + HGI48_RS00170 0.66 -2.1 44,699 + HGI48_RS00170 0.66 +0.2 44,700 - HGI48_RS00170 0.66 -0.3 44,700 - HGI48_RS00170 0.66 +0.5 44,700 - HGI48_RS00170 0.66 -1.0 44,700 - HGI48_RS00170 0.66 +0.4 44,700 - HGI48_RS00170 0.66 -1.0 44,700 - HGI48_RS00170 0.66 -0.4 44,700 - HGI48_RS00170 0.66 -1.8 44,700 - HGI48_RS00170 0.66 +1.0 44,735 + HGI48_RS00170 0.69 +0.5 44,736 - HGI48_RS00170 0.69 -0.3 44,736 - HGI48_RS00170 0.69 -1.0 44,883 + HGI48_RS00170 0.81 -0.1 44,883 + HGI48_RS00170 0.81 -1.1 44,884 - HGI48_RS00170 0.81 -1.0 44,884 - HGI48_RS00170 0.81 -0.2 44,913 + HGI48_RS00170 0.84 -0.3 44,913 + HGI48_RS00170 0.84 +0.2 44,914 - HGI48_RS00170 0.84 +0.0 44,978 + HGI48_RS00170 0.89 -1.3 44,979 - HGI48_RS00170 0.89 -0.3 44,997 + -1.8 44,997 + -1.6 44,997 + -1.3 44,998 - +0.0 45,120 + -0.2 45,120 + -0.4 45,121 - -0.5 45,121 - +0.6 45,121 - -1.0 45,121 - +0.2 45,140 + -1.0 45,140 + -0.6 45,140 + -0.8 45,140 + +2.0 45,140 + -1.3 45,141 - +0.3 45,146 + -0.3 45,146 + -0.4 45,147 - -0.1 45,147 - +1.4 45,179 - +0.0 45,179 - -0.2 45,179 - -2.1 45,186 - +0.0 45,186 - -0.5 45,211 - +0.2 45,424 + HGI48_RS00175 0.22 -0.4 45,425 - HGI48_RS00175 0.22 +0.3 45,664 - HGI48_RS00175 0.47 +1.2 45,677 - HGI48_RS00175 0.49 -1.1 45,737 - HGI48_RS00175 0.55 -0.1 45,742 + +1.4 45,742 + HGI48_RS00175 0.55 -0.6 45,743 - HGI48_RS00175 0.55 +0.8 45,743 - HGI48_RS00175 0.55 -0.1 45,749 - HGI48_RS00175 0.56 +0.0 45,755 + HGI48_RS00175 0.57 +0.0 45,755 + HGI48_RS00175 0.57 +0.6 45,755 + HGI48_RS00175 0.57 +1.4 45,756 - HGI48_RS00175 0.57 -0.4 45,756 - HGI48_RS00175 0.57 +0.0 45,756 - HGI48_RS00175 0.57 -2.3 45,756 - HGI48_RS00175 0.57 +0.2 45,756 - HGI48_RS00175 0.57 -1.5 45,756 - HGI48_RS00175 0.57 -0.3 45,756 - HGI48_RS00175 0.57 -0.1 45,764 - HGI48_RS00175 0.58 +0.3 45,890 + HGI48_RS00175 0.71 +0.8 45,890 + HGI48_RS00175 0.71 +0.2 45,890 + HGI48_RS00175 0.71 -1.1 45,890 + +3.0 45,902 - HGI48_RS00175 0.72 +1.0 46,005 + +1.0 46,005 + HGI48_RS00175 0.83 +0.0 46,005 + HGI48_RS00175 0.83 -1.0 46,021 + HGI48_RS00175 0.84 -0.2 46,022 - HGI48_RS00175 0.84 -0.7 46,235 + +0.8 46,236 - +1.0 46,279 + -0.8 46,279 + -0.6 46,322 - -0.3 46,332 - +0.6 46,332 - +0.8 46,408 + -0.4 46,408 + +1.0 46,409 - +0.4 46,409 - +0.6 46,409 - -1.3 46,409 - -1.8 46,409 - +1.0 46,416 + +0.4 46,416 + -0.6 46,416 + +1.9 46,416 + -1.3 46,417 - -2.1 46,417 - +0.4 46,449 - +0.0 46,543 - +1.0 46,553 - +0.6 46,554 + +0.0 46,555 - -0.8 46,655 + +0.6 46,656 - -0.2 46,658 + +0.5 46,658 + -1.2 46,658 + -1.6 46,658 + +0.4 46,658 + -0.2 46,659 - -0.8 46,659 - +0.0 46,659 - +0.5 46,659 - +0.4 46,659 - -0.6 46,693 - -0.3 46,701 + +0.8 46,702 - +0.0 46,705 + -0.8 46,771 + -1.1 46,775 - +0.2 46,803 + -0.5 46,815 + -1.2 46,816 - +0.7 46,817 + +0.2 46,817 + +0.6 46,859 + -0.8 46,859 + +0.0 46,859 + -0.5 46,880 + +0.0 46,880 + -0.1 46,881 - -0.3 46,881 - -1.6 46,888 + -1.0 46,888 + -0.2 46,912 + +0.7 46,912 + +1.4 46,913 - -0.6 46,913 - -0.6 46,971 + +0.4 46,971 + -0.6 46,980 + HGI48_RS00180 0.16 -2.6 46,980 + HGI48_RS00180 0.16 -0.3 47,003 + HGI48_RS00180 0.19 +1.7 47,003 + HGI48_RS00180 0.19 -0.6 47,003 + HGI48_RS00180 0.19 -0.7 47,037 + HGI48_RS00180 0.22 +0.4 47,038 - HGI48_RS00180 0.22 +1.5 47,044 + HGI48_RS00180 0.23 -2.4 47,055 + HGI48_RS00180 0.24 -1.8 47,070 + HGI48_RS00180 0.26 +0.8 47,098 + HGI48_RS00180 0.29 -0.6 47,118 - HGI48_RS00180 0.31 +0.3 47,118 - HGI48_RS00180 0.31 -1.3 47,118 - HGI48_RS00180 0.31 -1.1 47,118 - HGI48_RS00180 0.31 +1.0 47,145 + -0.6 47,146 - HGI48_RS00180 0.34 -1.0 47,146 - HGI48_RS00180 0.34 -0.8
Or see this region's nucleotide sequence