Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00140

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00135 and HGI48_RS00140 overlap by 4 nucleotidesHGI48_RS00140 and HGI48_RS00145 are separated by 29 nucleotides HGI48_RS00135: HGI48_RS00135 - alkylhydroperoxidase domain protein, at 34,595 to 35,713 _RS00135 HGI48_RS00140: HGI48_RS00140 - putative FMN-dependent luciferase-like monooxygenase, at 35,710 to 36,750 _RS00140 HGI48_RS00145: HGI48_RS00145 - ABC transporter ATP-binding protein, at 36,780 to 38,477 _RS00145 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 34.847 kb on + strand, within HGI48_RS00135at 34.848 kb on - strand, within HGI48_RS00135at 34.848 kb on - strand, within HGI48_RS00135at 34.848 kb on - strandat 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.909 kb on + strand, within HGI48_RS00135at 34.909 kb on + strand, within HGI48_RS00135at 34.909 kb on + strand, within HGI48_RS00135at 34.910 kb on - strand, within HGI48_RS00135at 34.910 kb on - strand, within HGI48_RS00135at 34.979 kb on - strand, within HGI48_RS00135at 34.979 kb on - strand, within HGI48_RS00135at 34.980 kb on + strand, within HGI48_RS00135at 34.980 kb on + strand, within HGI48_RS00135at 35.049 kb on + strand, within HGI48_RS00135at 35.050 kb on - strand, within HGI48_RS00135at 35.316 kb on - strand, within HGI48_RS00135at 35.487 kb on + strandat 35.487 kb on + strand, within HGI48_RS00135at 35.498 kb on + strand, within HGI48_RS00135at 35.598 kb on + strand, within HGI48_RS00135at 35.598 kb on + strand, within HGI48_RS00135at 35.599 kb on - strand, within HGI48_RS00135at 35.599 kb on - strand, within HGI48_RS00135at 35.599 kb on - strand, within HGI48_RS00135at 35.599 kb on - strandat 35.745 kb on + strandat 35.745 kb on + strandat 35.746 kb on - strandat 35.980 kb on + strand, within HGI48_RS00140at 36.117 kb on - strand, within HGI48_RS00140at 36.117 kb on - strand, within HGI48_RS00140at 36.460 kb on + strand, within HGI48_RS00140at 36.461 kb on - strandat 36.755 kb on - strandat 36.755 kb on - strandat 36.755 kb on - strandat 36.755 kb on - strandat 36.782 kb on - strandat 36.829 kb on + strandat 36.829 kb on + strandat 36.830 kb on - strandat 36.861 kb on + strandat 36.892 kb on + strandat 36.892 kb on + strandat 36.892 kb on + strandat 36.893 kb on - strandat 36.893 kb on - strandat 36.893 kb on - strandat 36.893 kb on - strandat 36.915 kb on + strandat 36.947 kb on + strandat 36.947 kb on + strandat 36.948 kb on - strandat 36.955 kb on + strand, within HGI48_RS00145at 36.955 kb on + strand, within HGI48_RS00145at 36.955 kb on + strand, within HGI48_RS00145at 36.955 kb on + strand, within HGI48_RS00145at 36.955 kb on + strand, within HGI48_RS00145at 36.955 kb on + strand, within HGI48_RS00145at 36.955 kb on + strand, within HGI48_RS00145at 36.955 kb on + strand, within HGI48_RS00145at 36.956 kb on - strand, within HGI48_RS00145at 36.956 kb on - strand, within HGI48_RS00145at 36.956 kb on - strand, within HGI48_RS00145at 36.956 kb on - strand, within HGI48_RS00145at 36.956 kb on - strandat 36.956 kb on - strand, within HGI48_RS00145at 36.956 kb on - strand, within HGI48_RS00145at 36.956 kb on - strand, within HGI48_RS00145at 36.956 kb on - strand, within HGI48_RS00145at 36.999 kb on + strandat 36.999 kb on + strand, within HGI48_RS00145at 36.999 kb on + strand, within HGI48_RS00145at 36.999 kb on + strand, within HGI48_RS00145at 37.176 kb on + strand, within HGI48_RS00145at 37.177 kb on - strand, within HGI48_RS00145at 37.211 kb on + strandat 37.677 kb on - strand, within HGI48_RS00145at 37.748 kb on + strand, within HGI48_RS00145at 37.748 kb on + strand, within HGI48_RS00145at 37.748 kb on + strand, within HGI48_RS00145at 37.749 kb on - strand, within HGI48_RS00145at 37.749 kb on - strand, within HGI48_RS00145at 37.749 kb on - strandat 37.750 kb on + strand, within HGI48_RS00145at 37.750 kb on + strandat 37.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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34,847 + HGI48_RS00135 0.23 -0.2
34,848 - HGI48_RS00135 0.23 -0.8
34,848 - HGI48_RS00135 0.23 +0.0
34,848 - -0.6
34,905 + HGI48_RS00135 0.28 -0.5
34,905 + HGI48_RS00135 0.28 +1.7
34,905 + HGI48_RS00135 0.28 -1.3
34,905 + HGI48_RS00135 0.28 +0.1
34,905 + HGI48_RS00135 0.28 -0.7
34,906 - HGI48_RS00135 0.28 -0.3
34,906 - HGI48_RS00135 0.28 -1.6
34,906 - HGI48_RS00135 0.28 -2.1
34,906 - HGI48_RS00135 0.28 -0.3
34,906 - HGI48_RS00135 0.28 -1.0
34,909 + HGI48_RS00135 0.28 -0.8
34,909 + HGI48_RS00135 0.28 +0.1
34,909 + HGI48_RS00135 0.28 +0.7
34,910 - HGI48_RS00135 0.28 +1.0
34,910 - HGI48_RS00135 0.28 -1.1
34,979 - HGI48_RS00135 0.34 -0.7
34,979 - HGI48_RS00135 0.34 +0.0
34,980 + HGI48_RS00135 0.34 +0.7
34,980 + HGI48_RS00135 0.34 -1.6
35,049 + HGI48_RS00135 0.41 -0.6
35,050 - HGI48_RS00135 0.41 -0.5
35,316 - HGI48_RS00135 0.64 +0.0
35,487 + +0.4
35,487 + HGI48_RS00135 0.80 -0.3
35,498 + HGI48_RS00135 0.81 -1.1
35,598 + HGI48_RS00135 0.90 -0.7
35,598 + HGI48_RS00135 0.90 -0.6
35,599 - HGI48_RS00135 0.90 -0.6
35,599 - HGI48_RS00135 0.90 -1.4
35,599 - HGI48_RS00135 0.90 +0.9
35,599 - +1.0
35,745 + -0.2
35,745 + +0.6
35,746 - -0.3
35,980 + HGI48_RS00140 0.26 +0.7
36,117 - HGI48_RS00140 0.39 +0.7
36,117 - HGI48_RS00140 0.39 -0.4
36,460 + HGI48_RS00140 0.72 +0.0
36,461 - -0.6
36,755 - -1.1
36,755 - +1.0
36,755 - -0.5
36,755 - +0.4
36,782 - -1.6
36,829 + -0.8
36,829 + +0.4
36,830 - -0.5
36,861 + -0.1
36,892 + -3.0
36,892 + +1.7
36,892 + -0.8
36,893 - +0.4
36,893 - +0.3
36,893 - -0.8
36,893 - +0.7
36,915 + +0.6
36,947 + -0.8
36,947 + -1.0
36,948 - -2.9
36,955 + HGI48_RS00145 0.10 +0.8
36,955 + HGI48_RS00145 0.10 +0.5
36,955 + HGI48_RS00145 0.10 +0.2
36,955 + HGI48_RS00145 0.10 -0.6
36,955 + HGI48_RS00145 0.10 +0.5
36,955 + HGI48_RS00145 0.10 -0.1
36,955 + HGI48_RS00145 0.10 -1.8
36,955 + HGI48_RS00145 0.10 -0.7
36,956 - HGI48_RS00145 0.10 +0.0
36,956 - HGI48_RS00145 0.10 -0.6
36,956 - HGI48_RS00145 0.10 -0.4
36,956 - HGI48_RS00145 0.10 -0.6
36,956 - +0.4
36,956 - HGI48_RS00145 0.10 -1.5
36,956 - HGI48_RS00145 0.10 +0.2
36,956 - HGI48_RS00145 0.10 +0.4
36,956 - HGI48_RS00145 0.10 -1.3
36,999 + +2.6
36,999 + HGI48_RS00145 0.13 +0.4
36,999 + HGI48_RS00145 0.13 -0.8
36,999 + HGI48_RS00145 0.13 -0.8
37,176 + HGI48_RS00145 0.23 -1.0
37,177 - HGI48_RS00145 0.23 +0.9
37,211 + +0.4
37,677 - HGI48_RS00145 0.53 +0.4
37,748 + HGI48_RS00145 0.57 -1.6
37,748 + HGI48_RS00145 0.57 -0.4
37,748 + HGI48_RS00145 0.57 -1.3
37,749 - HGI48_RS00145 0.57 -1.0
37,749 - HGI48_RS00145 0.57 -0.4
37,749 - +0.4
37,750 + HGI48_RS00145 0.57 +0.6
37,750 + -0.6
37,750 + -0.6

Or see this region's nucleotide sequence