Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00120 and HGI48_RS00125 are separated by 270 nucleotides HGI48_RS00125 and HGI48_RS00130 are separated by 140 nucleotides HGI48_RS00130 and HGI48_RS00135 are separated by 92 nucleotides
HGI48_RS00120: HGI48_RS00120 - GNAT family N-acetyltransferase, at 32,365 to 32,832
_RS00120
HGI48_RS00125: HGI48_RS00125 - DUF3861 domain-containing protein, at 33,103 to 33,393
_RS00125
HGI48_RS00130: HGI48_RS00130 - glucokinase, at 33,534 to 34,502
_RS00130
HGI48_RS00135: HGI48_RS00135 - alkylhydroperoxidase domain protein, at 34,595 to 35,713
_RS00135
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.587 kb on + strand at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.601 kb on - strand, within HGI48_RS00120 at 32.601 kb on - strand, within HGI48_RS00120 at 32.606 kb on + strand, within HGI48_RS00120 at 32.606 kb on + strand, within HGI48_RS00120 at 32.607 kb on - strand, within HGI48_RS00120 at 32.607 kb on - strand at 32.607 kb on - strand at 32.710 kb on - strand, within HGI48_RS00120 at 32.710 kb on - strand at 32.794 kb on + strand at 32.795 kb on - strand at 32.795 kb on - strand at 32.795 kb on - strand at 32.852 kb on + strand at 32.853 kb on - strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.896 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.065 kb on - strand at 33.065 kb on - strand at 33.097 kb on - strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.110 kb on - strand at 33.110 kb on - strand at 33.120 kb on + strand at 33.121 kb on - strand at 33.121 kb on - strand at 33.136 kb on - strand, within HGI48_RS00125 at 33.136 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand at 33.361 kb on - strand, within HGI48_RS00125 at 33.401 kb on + strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.438 kb on - strand at 33.438 kb on - strand at 33.438 kb on - strand at 33.443 kb on + strand at 33.444 kb on - strand at 33.498 kb on + strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.501 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.543 kb on + strand at 33.544 kb on - strand at 33.544 kb on - strand at 33.553 kb on + strand at 33.553 kb on + strand at 33.554 kb on - strand at 33.623 kb on + strand at 33.623 kb on + strand at 33.623 kb on + strand at 33.673 kb on + strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.933 kb on + strand at 33.933 kb on + strand, within HGI48_RS00130 at 34.057 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.128 kb on - strand, within HGI48_RS00130 at 34.128 kb on - strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.312 kb on - strand, within HGI48_RS00130 at 34.312 kb on - strand, within HGI48_RS00130 at 34.470 kb on + strand at 34.470 kb on + strand at 34.628 kb on + strand at 34.847 kb on + strand, within HGI48_RS00135 at 34.848 kb on - strand, within HGI48_RS00135 at 34.848 kb on - strand, within HGI48_RS00135 at 34.848 kb on - strand at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.909 kb on + strand, within HGI48_RS00135 at 34.909 kb on + strand, within HGI48_RS00135 at 34.909 kb on + strand, within HGI48_RS00135 at 34.910 kb on - strand, within HGI48_RS00135 at 34.910 kb on - strand, within HGI48_RS00135 at 34.979 kb on - strand, within HGI48_RS00135 at 34.979 kb on - strand, within HGI48_RS00135 at 34.980 kb on + strand, within HGI48_RS00135 at 34.980 kb on + strand, within HGI48_RS00135 at 35.049 kb on + strand, within HGI48_RS00135 at 35.050 kb on - strand, within HGI48_RS00135 at 35.316 kb on - strand, within HGI48_RS00135 at 35.487 kb on + strand at 35.487 kb on + strand, within HGI48_RS00135 at 35.498 kb on + strand, within HGI48_RS00135
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 32,587 + +1.4 32,600 + HGI48_RS00120 0.50 -0.6 32,600 + HGI48_RS00120 0.50 -1.6 32,600 + HGI48_RS00120 0.50 -0.8 32,600 + +1.0 32,600 + HGI48_RS00120 0.50 +0.2 32,600 + HGI48_RS00120 0.50 +0.4 32,600 + HGI48_RS00120 0.50 -0.2 32,601 - HGI48_RS00120 0.50 -1.5 32,601 - HGI48_RS00120 0.50 +0.6 32,606 + HGI48_RS00120 0.51 +0.4 32,606 + HGI48_RS00120 0.51 -0.3 32,607 - HGI48_RS00120 0.52 +1.0 32,607 - +0.0 32,607 - +1.0 32,710 - HGI48_RS00120 0.74 -1.3 32,710 - +0.4 32,794 + +1.8 32,795 - -0.1 32,795 - -2.0 32,795 - -0.3 32,852 + +0.5 32,853 - -0.1 32,890 + -1.3 32,890 + +0.4 32,890 + +0.5 32,890 + +0.3 32,891 - -0.5 32,891 - +0.0 32,891 - -0.6 32,891 - +1.0 32,891 - -0.1 32,896 + -0.1 33,064 + +1.2 33,064 + +0.0 33,064 + +0.5 33,064 + +1.8 33,064 + +1.0 33,064 + +0.0 33,064 + +0.8 33,064 + +0.3 33,064 + +1.2 33,065 - -0.1 33,065 - -0.6 33,097 - -1.6 33,102 + -1.6 33,102 + -0.3 33,102 + -0.5 33,102 + -1.3 33,102 + +0.2 33,102 + -0.6 33,102 + +0.2 33,103 - +0.0 33,103 - +1.0 33,103 - -0.9 33,103 - +0.4 33,110 - +0.2 33,110 - +0.0 33,120 + -0.2 33,121 - +0.0 33,121 - -1.3 33,136 - HGI48_RS00125 0.11 -1.3 33,136 - HGI48_RS00125 0.11 -1.6 33,361 - HGI48_RS00125 0.89 -0.4 33,361 - HGI48_RS00125 0.89 -0.2 33,361 - HGI48_RS00125 0.89 -0.1 33,361 - HGI48_RS00125 0.89 -0.6 33,361 - HGI48_RS00125 0.89 -0.3 33,361 - +0.4 33,361 - HGI48_RS00125 0.89 +0.0 33,401 + +1.0 33,402 - +1.0 33,402 - -0.9 33,402 - -1.1 33,402 - +0.0 33,402 - -0.1 33,437 + -0.1 33,437 + -1.6 33,437 + +1.0 33,437 + +1.0 33,437 + +2.3 33,437 + -0.3 33,438 - -0.5 33,438 - +0.8 33,438 - +0.5 33,443 + -0.3 33,444 - -0.8 33,498 + +2.0 33,499 - +0.7 33,499 - -0.6 33,499 - -2.4 33,499 - +0.0 33,499 - -0.0 33,501 - +0.6 33,511 - +0.0 33,511 - -0.6 33,511 - -0.3 33,511 - -0.6 33,511 - -0.1 33,528 + -1.9 33,528 + +0.0 33,528 + -1.8 33,528 + -1.0 33,528 + -0.2 33,533 + -1.6 33,533 + +1.5 33,533 + +0.7 33,533 + +1.7 33,533 + +0.4 33,533 + +1.1 33,534 - +1.0 33,534 - +0.5 33,534 - +0.5 33,534 - +0.2 33,543 + +1.0 33,544 - +0.3 33,544 - -1.6 33,553 + +1.0 33,553 + +0.2 33,554 - +0.7 33,623 + +0.7 33,623 + +1.0 33,623 + +0.0 33,673 + HGI48_RS00130 0.14 +1.3 33,674 - HGI48_RS00130 0.14 -0.1 33,674 - HGI48_RS00130 0.14 +0.0 33,674 - HGI48_RS00130 0.14 -1.4 33,716 + HGI48_RS00130 0.19 -1.2 33,716 + HGI48_RS00130 0.19 -1.3 33,716 + HGI48_RS00130 0.19 -1.6 33,716 + HGI48_RS00130 0.19 -0.8 33,717 - HGI48_RS00130 0.19 +0.2 33,717 - HGI48_RS00130 0.19 -0.6 33,717 - HGI48_RS00130 0.19 -1.3 33,717 - HGI48_RS00130 0.19 -0.4 33,717 - HGI48_RS00130 0.19 -2.4 33,933 + +2.6 33,933 + HGI48_RS00130 0.41 -1.3 34,057 + HGI48_RS00130 0.54 +0.0 34,127 + HGI48_RS00130 0.61 +0.5 34,127 + HGI48_RS00130 0.61 -1.3 34,127 + HGI48_RS00130 0.61 +0.8 34,127 + HGI48_RS00130 0.61 -1.0 34,127 + HGI48_RS00130 0.61 -1.6 34,128 - HGI48_RS00130 0.61 -2.0 34,128 - HGI48_RS00130 0.61 -0.4 34,311 + HGI48_RS00130 0.80 +0.0 34,311 + HGI48_RS00130 0.80 +0.4 34,311 + HGI48_RS00130 0.80 +0.8 34,311 + HGI48_RS00130 0.80 +1.2 34,311 + +1.4 34,311 + HGI48_RS00130 0.80 +1.0 34,311 + HGI48_RS00130 0.80 +0.2 34,311 + HGI48_RS00130 0.80 +0.8 34,311 + HGI48_RS00130 0.80 -1.3 34,312 - HGI48_RS00130 0.80 +0.3 34,312 - HGI48_RS00130 0.80 +0.7 34,470 + +0.2 34,470 + -0.4 34,628 + -0.1 34,847 + HGI48_RS00135 0.23 -0.2 34,848 - HGI48_RS00135 0.23 -0.8 34,848 - HGI48_RS00135 0.23 +0.0 34,848 - -0.6 34,905 + HGI48_RS00135 0.28 -0.5 34,905 + HGI48_RS00135 0.28 +1.7 34,905 + HGI48_RS00135 0.28 -1.3 34,905 + HGI48_RS00135 0.28 +0.1 34,905 + HGI48_RS00135 0.28 -0.7 34,906 - HGI48_RS00135 0.28 -0.3 34,906 - HGI48_RS00135 0.28 -1.6 34,906 - HGI48_RS00135 0.28 -2.1 34,906 - HGI48_RS00135 0.28 -0.3 34,906 - HGI48_RS00135 0.28 -1.0 34,909 + HGI48_RS00135 0.28 -0.8 34,909 + HGI48_RS00135 0.28 +0.1 34,909 + HGI48_RS00135 0.28 +0.7 34,910 - HGI48_RS00135 0.28 +1.0 34,910 - HGI48_RS00135 0.28 -1.1 34,979 - HGI48_RS00135 0.34 -0.7 34,979 - HGI48_RS00135 0.34 +0.0 34,980 + HGI48_RS00135 0.34 +0.7 34,980 + HGI48_RS00135 0.34 -1.6 35,049 + HGI48_RS00135 0.41 -0.6 35,050 - HGI48_RS00135 0.41 -0.5 35,316 - HGI48_RS00135 0.64 +0.0 35,487 + +0.4 35,487 + HGI48_RS00135 0.80 -0.3 35,498 + HGI48_RS00135 0.81 -1.1
Or see this region's nucleotide sequence