Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00110

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00105 and HGI48_RS00110 are separated by 53 nucleotidesHGI48_RS00110 and HGI48_RS00115 are separated by 590 nucleotides HGI48_RS00105: HGI48_RS00105 - oxalyl-CoA decarboxylase, at 27,319 to 29,064 _RS00105 HGI48_RS00110: HGI48_RS00110 - OFA family MFS transporter, at 29,118 to 30,425 _RS00110 HGI48_RS00115: HGI48_RS00115 - LysR family transcriptional regulator, at 31,016 to 31,912 _RS00115 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.120 kb on - strand, within HGI48_RS00105at 28.225 kb on + strandat 28.225 kb on + strandat 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strandat 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.230 kb on - strandat 28.230 kb on - strand, within HGI48_RS00105at 28.230 kb on - strand, within HGI48_RS00105at 28.230 kb on - strand, within HGI48_RS00105at 28.301 kb on + strand, within HGI48_RS00105at 28.355 kb on + strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.463 kb on - strand, within HGI48_RS00105at 28.463 kb on - strand, within HGI48_RS00105at 28.465 kb on + strandat 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.475 kb on - strand, within HGI48_RS00105at 28.475 kb on - strand, within HGI48_RS00105at 28.482 kb on + strandat 28.539 kb on - strand, within HGI48_RS00105at 28.539 kb on - strand, within HGI48_RS00105at 28.562 kb on - strand, within HGI48_RS00105at 28.632 kb on + strand, within HGI48_RS00105at 28.673 kb on + strand, within HGI48_RS00105at 28.743 kb on + strand, within HGI48_RS00105at 28.743 kb on + strand, within HGI48_RS00105at 28.744 kb on - strand, within HGI48_RS00105at 28.744 kb on - strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 29.085 kb on + strandat 29.093 kb on + strandat 29.245 kb on + strandat 29.245 kb on + strandat 29.245 kb on + strandat 29.246 kb on - strandat 29.351 kb on - strand, within HGI48_RS00110at 29.384 kb on - strand, within HGI48_RS00110at 29.494 kb on + strand, within HGI48_RS00110at 29.494 kb on + strand, within HGI48_RS00110at 29.495 kb on - strand, within HGI48_RS00110at 29.495 kb on - strand, within HGI48_RS00110at 29.570 kb on + strand, within HGI48_RS00110at 29.570 kb on + strand, within HGI48_RS00110at 29.571 kb on - strand, within HGI48_RS00110at 29.612 kb on + strandat 29.652 kb on - strand, within HGI48_RS00110at 29.673 kb on + strand, within HGI48_RS00110at 29.715 kb on - strand, within HGI48_RS00110at 29.895 kb on - strand, within HGI48_RS00110at 29.918 kb on + strand, within HGI48_RS00110at 30.021 kb on - strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.037 kb on + strand, within HGI48_RS00110at 30.038 kb on - strand, within HGI48_RS00110at 30.038 kb on - strand, within HGI48_RS00110at 30.065 kb on + strand, within HGI48_RS00110at 30.131 kb on + strandat 30.132 kb on - strand, within HGI48_RS00110at 30.311 kb on - strandat 30.379 kb on - strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.458 kb on + strandat 30.649 kb on + strandat 31.031 kb on - strandat 31.048 kb on - strandat 31.048 kb on - strandat 31.170 kb on + strand, within HGI48_RS00115at 31.171 kb on - strand, within HGI48_RS00115at 31.242 kb on + strand, within HGI48_RS00115at 31.242 kb on + strand, within HGI48_RS00115at 31.270 kb on + strand, within HGI48_RS00115at 31.270 kb on + strand, within HGI48_RS00115at 31.271 kb on - strand, within HGI48_RS00115at 31.271 kb on - strand, within HGI48_RS00115at 31.271 kb on - strand, within HGI48_RS00115at 31.380 kb on - strand, within HGI48_RS00115at 31.399 kb on - strand, within HGI48_RS00115

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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28,120 - HGI48_RS00105 0.46 -0.3
28,225 + +1.0
28,225 + +0.0
28,225 + HGI48_RS00105 0.52 +0.3
28,225 + HGI48_RS00105 0.52 +0.6
28,225 + HGI48_RS00105 0.52 -0.2
28,225 + HGI48_RS00105 0.52 +0.0
28,226 - HGI48_RS00105 0.52 -0.1
28,226 - HGI48_RS00105 0.52 +1.2
28,226 - HGI48_RS00105 0.52 -0.4
28,226 - HGI48_RS00105 0.52 +0.5
28,226 - HGI48_RS00105 0.52 +0.7
28,229 + HGI48_RS00105 0.52 +0.1
28,229 + HGI48_RS00105 0.52 -1.4
28,229 + HGI48_RS00105 0.52 -0.3
28,229 + +1.0
28,229 + HGI48_RS00105 0.52 -1.6
28,229 + HGI48_RS00105 0.52 -1.1
28,229 + HGI48_RS00105 0.52 -1.1
28,230 - -0.6
28,230 - HGI48_RS00105 0.52 -1.3
28,230 - HGI48_RS00105 0.52 -0.7
28,230 - HGI48_RS00105 0.52 -0.8
28,301 + HGI48_RS00105 0.56 +0.9
28,355 + HGI48_RS00105 0.59 +0.6
28,429 - HGI48_RS00105 0.64 -0.1
28,429 - HGI48_RS00105 0.64 +1.2
28,429 - HGI48_RS00105 0.64 +1.7
28,462 + HGI48_RS00105 0.65 -1.8
28,462 + HGI48_RS00105 0.65 -0.3
28,462 + HGI48_RS00105 0.65 -1.6
28,463 - HGI48_RS00105 0.66 -2.4
28,463 - HGI48_RS00105 0.66 -1.8
28,465 + +1.0
28,465 + HGI48_RS00105 0.66 +0.3
28,465 + HGI48_RS00105 0.66 -0.7
28,465 + HGI48_RS00105 0.66 -0.1
28,465 + HGI48_RS00105 0.66 -0.4
28,465 + HGI48_RS00105 0.66 -0.4
28,465 + HGI48_RS00105 0.66 -0.3
28,466 - HGI48_RS00105 0.66 -0.8
28,466 - HGI48_RS00105 0.66 -0.9
28,466 - HGI48_RS00105 0.66 +0.0
28,475 - HGI48_RS00105 0.66 +0.8
28,475 - HGI48_RS00105 0.66 -0.1
28,482 + +2.6
28,539 - HGI48_RS00105 0.70 -0.6
28,539 - HGI48_RS00105 0.70 +1.0
28,562 - HGI48_RS00105 0.71 -1.3
28,632 + HGI48_RS00105 0.75 -1.0
28,673 + HGI48_RS00105 0.78 +1.0
28,743 + HGI48_RS00105 0.82 -1.2
28,743 + HGI48_RS00105 0.82 -1.6
28,744 - HGI48_RS00105 0.82 +0.6
28,744 - HGI48_RS00105 0.82 -1.8
28,879 + HGI48_RS00105 0.89 +0.0
28,879 + HGI48_RS00105 0.89 +1.7
28,879 + HGI48_RS00105 0.89 +1.0
28,881 + HGI48_RS00105 0.89 -0.1
28,881 + HGI48_RS00105 0.89 -2.1
28,881 + HGI48_RS00105 0.89 -2.1
28,881 + HGI48_RS00105 0.89 -0.8
28,881 + HGI48_RS00105 0.89 -1.0
28,881 + HGI48_RS00105 0.89 -0.3
28,881 + HGI48_RS00105 0.89 -0.3
28,882 - HGI48_RS00105 0.90 +0.2
28,882 - HGI48_RS00105 0.90 +1.2
28,882 - HGI48_RS00105 0.90 +1.0
28,882 - HGI48_RS00105 0.90 -0.2
29,085 + -0.5
29,093 + +0.1
29,245 + +1.0
29,245 + -1.6
29,245 + -0.4
29,246 - -1.0
29,351 - HGI48_RS00110 0.18 -1.0
29,384 - HGI48_RS00110 0.20 -1.0
29,494 + HGI48_RS00110 0.29 -1.3
29,494 + HGI48_RS00110 0.29 -1.3
29,495 - HGI48_RS00110 0.29 -0.6
29,495 - HGI48_RS00110 0.29 -0.3
29,570 + HGI48_RS00110 0.35 +0.3
29,570 + HGI48_RS00110 0.35 +0.6
29,571 - HGI48_RS00110 0.35 -1.3
29,612 + +0.0
29,652 - HGI48_RS00110 0.41 -0.5
29,673 + HGI48_RS00110 0.42 -1.0
29,715 - HGI48_RS00110 0.46 +0.3
29,895 - HGI48_RS00110 0.59 +0.3
29,918 + HGI48_RS00110 0.61 -0.1
30,021 - HGI48_RS00110 0.69 -0.5
30,023 + HGI48_RS00110 0.69 +1.8
30,023 + HGI48_RS00110 0.69 -1.0
30,023 + HGI48_RS00110 0.69 +1.0
30,037 + HGI48_RS00110 0.70 -0.3
30,038 - HGI48_RS00110 0.70 +0.2
30,038 - HGI48_RS00110 0.70 -1.7
30,065 + HGI48_RS00110 0.72 -0.4
30,131 + +2.0
30,132 - HGI48_RS00110 0.78 -0.3
30,311 - +0.4
30,379 - +0.3
30,431 + -1.0
30,431 + +0.0
30,458 + -1.1
30,649 + +1.0
31,031 - -1.2
31,048 - +1.0
31,048 - +0.3
31,170 + HGI48_RS00115 0.17 -0.8
31,171 - HGI48_RS00115 0.17 -0.3
31,242 + HGI48_RS00115 0.25 -0.8
31,242 + HGI48_RS00115 0.25 -0.7
31,270 + HGI48_RS00115 0.28 -0.6
31,270 + HGI48_RS00115 0.28 +0.6
31,271 - HGI48_RS00115 0.28 -0.7
31,271 - HGI48_RS00115 0.28 -0.1
31,271 - HGI48_RS00115 0.28 -0.3
31,380 - HGI48_RS00115 0.41 -0.6
31,399 - HGI48_RS00115 0.43 -0.5

Or see this region's nucleotide sequence