Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00080

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00075 and HGI48_RS00080 are separated by 22 nucleotidesHGI48_RS00080 and HGI48_RS00085 are separated by 103 nucleotidesHGI48_RS00085 and HGI48_RS00090 are separated by 464 nucleotides HGI48_RS00075: HGI48_RS00075 - DUF459 domain-containing protein, at 21,221 to 22,288 _RS00075 HGI48_RS00080: HGI48_RS00080 - hypothetical protein, at 22,311 to 23,525 _RS00080 HGI48_RS00085: HGI48_RS00085 - IS3 family transposase, at 23,629 to 23,754 _RS00085 HGI48_RS00090: HGI48_RS00090 - formyl-CoA transferase, at 24,219 to 25,466 _RS00090 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.328 kb on + strand, within HGI48_RS00075at 21.329 kb on - strand, within HGI48_RS00075at 21.329 kb on - strand, within HGI48_RS00075at 21.329 kb on - strand, within HGI48_RS00075at 21.355 kb on + strand, within HGI48_RS00075at 21.356 kb on - strand, within HGI48_RS00075at 21.356 kb on - strand, within HGI48_RS00075at 21.475 kb on + strand, within HGI48_RS00075at 21.475 kb on + strand, within HGI48_RS00075at 21.475 kb on + strand, within HGI48_RS00075at 21.475 kb on + strand, within HGI48_RS00075at 21.475 kb on + strand, within HGI48_RS00075at 21.475 kb on + strand, within HGI48_RS00075at 21.475 kb on + strandat 21.476 kb on - strand, within HGI48_RS00075at 21.476 kb on - strand, within HGI48_RS00075at 21.476 kb on - strand, within HGI48_RS00075at 21.508 kb on - strand, within HGI48_RS00075at 21.657 kb on + strand, within HGI48_RS00075at 21.685 kb on + strand, within HGI48_RS00075at 21.685 kb on + strand, within HGI48_RS00075at 21.746 kb on + strand, within HGI48_RS00075at 21.746 kb on + strand, within HGI48_RS00075at 21.747 kb on - strand, within HGI48_RS00075at 21.748 kb on + strand, within HGI48_RS00075at 21.749 kb on - strand, within HGI48_RS00075at 21.749 kb on - strand, within HGI48_RS00075at 21.749 kb on - strand, within HGI48_RS00075at 21.749 kb on - strand, within HGI48_RS00075at 21.749 kb on - strand, within HGI48_RS00075at 21.772 kb on + strand, within HGI48_RS00075at 21.773 kb on - strandat 21.911 kb on - strand, within HGI48_RS00075at 21.914 kb on - strand, within HGI48_RS00075at 21.914 kb on - strand, within HGI48_RS00075at 22.017 kb on + strand, within HGI48_RS00075at 22.018 kb on - strand, within HGI48_RS00075at 22.116 kb on + strand, within HGI48_RS00075at 22.136 kb on - strand, within HGI48_RS00075at 22.154 kb on - strand, within HGI48_RS00075at 22.161 kb on - strandat 22.183 kb on + strandat 22.194 kb on + strandat 22.195 kb on - strandat 22.198 kb on + strandat 22.199 kb on - strandat 22.204 kb on + strandat 22.204 kb on + strandat 22.205 kb on - strandat 22.207 kb on + strandat 22.327 kb on + strandat 22.327 kb on + strandat 22.327 kb on + strandat 22.328 kb on - strandat 22.331 kb on + strandat 22.331 kb on + strandat 22.487 kb on + strand, within HGI48_RS00080at 22.505 kb on + strand, within HGI48_RS00080at 22.505 kb on + strand, within HGI48_RS00080at 22.505 kb on + strand, within HGI48_RS00080at 22.505 kb on + strand, within HGI48_RS00080at 22.505 kb on + strandat 22.505 kb on + strand, within HGI48_RS00080at 22.506 kb on - strand, within HGI48_RS00080at 22.506 kb on - strand, within HGI48_RS00080at 22.506 kb on - strand, within HGI48_RS00080at 22.509 kb on + strand, within HGI48_RS00080at 22.509 kb on + strand, within HGI48_RS00080at 22.509 kb on + strand, within HGI48_RS00080at 22.509 kb on + strand, within HGI48_RS00080at 22.509 kb on + strand, within HGI48_RS00080at 22.510 kb on - strand, within HGI48_RS00080at 22.510 kb on - strand, within HGI48_RS00080at 22.510 kb on - strand, within HGI48_RS00080at 22.522 kb on + strand, within HGI48_RS00080at 22.522 kb on + strand, within HGI48_RS00080at 22.522 kb on + strand, within HGI48_RS00080at 22.523 kb on - strand, within HGI48_RS00080at 22.523 kb on - strand, within HGI48_RS00080at 22.523 kb on - strand, within HGI48_RS00080at 22.579 kb on + strand, within HGI48_RS00080at 22.579 kb on + strand, within HGI48_RS00080at 22.580 kb on - strand, within HGI48_RS00080at 22.580 kb on - strandat 22.626 kb on - strand, within HGI48_RS00080at 22.699 kb on + strandat 22.730 kb on + strand, within HGI48_RS00080at 22.736 kb on - strand, within HGI48_RS00080at 22.769 kb on + strand, within HGI48_RS00080at 22.770 kb on - strand, within HGI48_RS00080at 22.770 kb on - strand, within HGI48_RS00080at 22.790 kb on - strand, within HGI48_RS00080at 22.828 kb on - strandat 22.828 kb on - strand, within HGI48_RS00080at 22.852 kb on + strand, within HGI48_RS00080at 22.852 kb on + strand, within HGI48_RS00080at 22.852 kb on + strand, within HGI48_RS00080at 22.942 kb on - strand, within HGI48_RS00080at 23.031 kb on - strand, within HGI48_RS00080at 23.051 kb on + strand, within HGI48_RS00080at 23.051 kb on + strandat 23.052 kb on - strand, within HGI48_RS00080at 23.052 kb on - strand, within HGI48_RS00080at 23.089 kb on + strand, within HGI48_RS00080at 23.114 kb on - strand, within HGI48_RS00080at 23.114 kb on - strand, within HGI48_RS00080at 23.114 kb on - strand, within HGI48_RS00080at 23.116 kb on + strand, within HGI48_RS00080at 23.159 kb on + strand, within HGI48_RS00080at 23.181 kb on + strand, within HGI48_RS00080at 23.181 kb on + strand, within HGI48_RS00080at 23.182 kb on - strand, within HGI48_RS00080at 23.190 kb on + strandat 23.191 kb on - strand, within HGI48_RS00080at 23.191 kb on - strand, within HGI48_RS00080at 23.255 kb on + strand, within HGI48_RS00080at 23.264 kb on + strand, within HGI48_RS00080at 23.264 kb on + strand, within HGI48_RS00080at 23.264 kb on + strand, within HGI48_RS00080at 23.305 kb on + strand, within HGI48_RS00080at 23.306 kb on - strand, within HGI48_RS00080at 23.376 kb on + strand, within HGI48_RS00080at 23.376 kb on + strand, within HGI48_RS00080at 23.376 kb on + strand, within HGI48_RS00080at 23.377 kb on - strandat 23.377 kb on - strandat 23.377 kb on - strand, within HGI48_RS00080at 23.377 kb on - strandat 23.396 kb on + strand, within HGI48_RS00080at 23.396 kb on + strand, within HGI48_RS00080at 23.396 kb on + strandat 23.397 kb on - strand, within HGI48_RS00080at 23.397 kb on - strand, within HGI48_RS00080at 23.468 kb on + strandat 23.507 kb on + strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.510 kb on + strandat 23.510 kb on + strandat 23.511 kb on - strandat 23.511 kb on - strandat 23.524 kb on - strandat 23.524 kb on - strandat 23.570 kb on - strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.614 kb on + strandat 23.614 kb on + strandat 23.614 kb on + strandat 23.615 kb on - strandat 23.615 kb on - strandat 23.642 kb on + strand, within HGI48_RS00085at 23.653 kb on - strand, within HGI48_RS00085at 23.750 kb on - strandat 23.865 kb on + strandat 23.926 kb on + strandat 23.927 kb on - strandat 23.927 kb on - strandat 24.038 kb on + strandat 24.038 kb on + strandat 24.038 kb on + strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.348 kb on - strand, within HGI48_RS00090at 24.370 kb on + strand, within HGI48_RS00090at 24.370 kb on + strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.478 kb on + strand, within HGI48_RS00090at 24.479 kb on - strand, within HGI48_RS00090at 24.479 kb on - strand, within HGI48_RS00090at 24.479 kb on - strand, within HGI48_RS00090at 24.485 kb on + strand, within HGI48_RS00090

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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21,328 + HGI48_RS00075 0.10 -1.8
21,329 - HGI48_RS00075 0.10 +0.8
21,329 - HGI48_RS00075 0.10 +0.4
21,329 - HGI48_RS00075 0.10 -0.6
21,355 + HGI48_RS00075 0.13 -0.6
21,356 - HGI48_RS00075 0.13 +0.4
21,356 - HGI48_RS00075 0.13 +1.6
21,475 + HGI48_RS00075 0.24 +0.8
21,475 + HGI48_RS00075 0.24 -0.3
21,475 + HGI48_RS00075 0.24 -0.2
21,475 + HGI48_RS00075 0.24 -0.8
21,475 + HGI48_RS00075 0.24 -0.2
21,475 + HGI48_RS00075 0.24 -0.9
21,475 + +1.6
21,476 - HGI48_RS00075 0.24 -0.1
21,476 - HGI48_RS00075 0.24 +0.5
21,476 - HGI48_RS00075 0.24 -0.1
21,508 - HGI48_RS00075 0.27 -1.1
21,657 + HGI48_RS00075 0.41 +0.0
21,685 + HGI48_RS00075 0.43 +0.7
21,685 + HGI48_RS00075 0.43 +1.0
21,746 + HGI48_RS00075 0.49 -0.2
21,746 + HGI48_RS00075 0.49 -1.8
21,747 - HGI48_RS00075 0.49 +0.3
21,748 + HGI48_RS00075 0.49 -0.1
21,749 - HGI48_RS00075 0.49 -0.2
21,749 - HGI48_RS00075 0.49 -0.1
21,749 - HGI48_RS00075 0.49 -2.0
21,749 - HGI48_RS00075 0.49 -2.0
21,749 - HGI48_RS00075 0.49 +0.7
21,772 + HGI48_RS00075 0.52 -0.2
21,773 - +2.0
21,911 - HGI48_RS00075 0.65 -1.6
21,914 - HGI48_RS00075 0.65 -1.8
21,914 - HGI48_RS00075 0.65 -0.6
22,017 + HGI48_RS00075 0.75 -0.6
22,018 - HGI48_RS00075 0.75 -0.3
22,116 + HGI48_RS00075 0.84 -1.2
22,136 - HGI48_RS00075 0.86 +0.0
22,154 - HGI48_RS00075 0.87 +0.2
22,161 - +0.4
22,183 + -0.3
22,194 + +0.0
22,195 - +0.0
22,198 + -1.0
22,199 - -1.8
22,204 + -1.3
22,204 + +0.6
22,205 - +1.0
22,207 + +1.0
22,327 + +0.2
22,327 + +0.3
22,327 + +0.3
22,328 - +0.0
22,331 + +1.0
22,331 + -0.3
22,487 + HGI48_RS00080 0.14 +0.1
22,505 + HGI48_RS00080 0.16 -0.4
22,505 + HGI48_RS00080 0.16 -0.8
22,505 + HGI48_RS00080 0.16 -0.5
22,505 + HGI48_RS00080 0.16 +0.8
22,505 + -0.6
22,505 + HGI48_RS00080 0.16 +0.0
22,506 - HGI48_RS00080 0.16 -0.3
22,506 - HGI48_RS00080 0.16 -0.8
22,506 - HGI48_RS00080 0.16 -0.2
22,509 + HGI48_RS00080 0.16 +0.2
22,509 + HGI48_RS00080 0.16 -1.8
22,509 + HGI48_RS00080 0.16 -0.3
22,509 + HGI48_RS00080 0.16 +1.3
22,509 + HGI48_RS00080 0.16 -1.8
22,510 - HGI48_RS00080 0.16 -1.4
22,510 - HGI48_RS00080 0.16 -0.2
22,510 - HGI48_RS00080 0.16 -1.3
22,522 + HGI48_RS00080 0.17 +0.0
22,522 + HGI48_RS00080 0.17 -0.3
22,522 + HGI48_RS00080 0.17 +0.0
22,523 - HGI48_RS00080 0.17 -1.0
22,523 - HGI48_RS00080 0.17 -1.0
22,523 - HGI48_RS00080 0.17 -1.2
22,579 + HGI48_RS00080 0.22 -0.8
22,579 + HGI48_RS00080 0.22 +0.0
22,580 - HGI48_RS00080 0.22 -0.3
22,580 - +2.0
22,626 - HGI48_RS00080 0.26 -2.0
22,699 + +2.2
22,730 + HGI48_RS00080 0.34 -0.1
22,736 - HGI48_RS00080 0.35 -0.4
22,769 + HGI48_RS00080 0.38 -0.6
22,770 - HGI48_RS00080 0.38 +0.4
22,770 - HGI48_RS00080 0.38 +0.7
22,790 - HGI48_RS00080 0.39 -0.7
22,828 - +1.0
22,828 - HGI48_RS00080 0.43 -1.6
22,852 + HGI48_RS00080 0.45 -0.4
22,852 + HGI48_RS00080 0.45 +0.3
22,852 + HGI48_RS00080 0.45 +0.1
22,942 - HGI48_RS00080 0.52 +2.1
23,031 - HGI48_RS00080 0.59 +0.5
23,051 + HGI48_RS00080 0.61 -1.0
23,051 + +0.0
23,052 - HGI48_RS00080 0.61 +1.0
23,052 - HGI48_RS00080 0.61 +0.4
23,089 + HGI48_RS00080 0.64 -1.1
23,114 - HGI48_RS00080 0.66 -1.6
23,114 - HGI48_RS00080 0.66 +0.2
23,114 - HGI48_RS00080 0.66 +0.4
23,116 + HGI48_RS00080 0.66 -0.2
23,159 + HGI48_RS00080 0.70 +0.5
23,181 + HGI48_RS00080 0.72 +0.4
23,181 + HGI48_RS00080 0.72 -1.6
23,182 - HGI48_RS00080 0.72 +0.0
23,190 + +2.0
23,191 - HGI48_RS00080 0.72 -1.0
23,191 - HGI48_RS00080 0.72 +0.0
23,255 + HGI48_RS00080 0.78 +1.0
23,264 + HGI48_RS00080 0.78 -0.8
23,264 + HGI48_RS00080 0.78 -0.9
23,264 + HGI48_RS00080 0.78 +0.7
23,305 + HGI48_RS00080 0.82 -0.6
23,306 - HGI48_RS00080 0.82 -0.4
23,376 + HGI48_RS00080 0.88 -0.9
23,376 + HGI48_RS00080 0.88 -1.4
23,376 + HGI48_RS00080 0.88 -0.9
23,377 - +0.0
23,377 - +0.4
23,377 - HGI48_RS00080 0.88 -0.1
23,377 - +1.0
23,396 + HGI48_RS00080 0.89 +1.3
23,396 + HGI48_RS00080 0.89 +1.2
23,396 + +0.0
23,397 - HGI48_RS00080 0.89 -0.8
23,397 - HGI48_RS00080 0.89 -0.8
23,468 + -0.2
23,507 + +1.4
23,508 - -0.5
23,508 - -1.7
23,508 - +1.0
23,508 - +0.3
23,508 - +0.4
23,508 - -0.6
23,510 + +0.2
23,510 + -0.8
23,511 - +0.3
23,511 - -1.2
23,524 - -1.0
23,524 - -0.4
23,570 - -0.6
23,594 + -2.4
23,594 + +0.5
23,594 + +0.2
23,594 + +0.7
23,594 + +0.6
23,595 - +0.3
23,595 - +1.5
23,595 - -0.2
23,595 - -0.6
23,595 - -1.3
23,595 - +0.1
23,595 - -0.9
23,614 + +0.4
23,614 + -0.7
23,614 + -1.6
23,615 - +0.8
23,615 - -1.0
23,642 + HGI48_RS00085 0.10 +0.8
23,653 - HGI48_RS00085 0.19 -0.2
23,750 - +1.0
23,865 + +0.0
23,926 + +1.4
23,927 - -0.8
23,927 - -0.1
24,038 + -1.1
24,038 + -1.3
24,038 + -0.7
24,039 - -1.0
24,039 - -0.1
24,039 - +2.6
24,039 - +0.7
24,039 - +0.0
24,039 - -1.6
24,348 - HGI48_RS00090 0.10 -1.0
24,370 + HGI48_RS00090 0.12 -0.5
24,370 + HGI48_RS00090 0.12 -1.0
24,371 - HGI48_RS00090 0.12 +0.2
24,371 - HGI48_RS00090 0.12 +0.5
24,371 - HGI48_RS00090 0.12 +0.3
24,371 - HGI48_RS00090 0.12 +0.3
24,478 + HGI48_RS00090 0.21 +0.3
24,479 - HGI48_RS00090 0.21 +1.0
24,479 - HGI48_RS00090 0.21 +0.5
24,479 - HGI48_RS00090 0.21 +0.0
24,485 + HGI48_RS00090 0.21 +1.0

Or see this region's nucleotide sequence