Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20625 and HGI48_RS20630 are separated by 194 nucleotides HGI48_RS20630 and HGI48_RS20635 overlap by 4 nucleotides HGI48_RS20635 and HGI48_RS20640 are separated by 6 nucleotides HGI48_RS20640 and HGI48_RS20645 are separated by 11 nucleotides
HGI48_RS20625: HGI48_RS20625 - AEC family transporter, at 4,606,960 to 4,607,916
_RS20625
HGI48_RS20630: HGI48_RS20630 - glycerophosphodiester phosphodiesterase, at 4,608,111 to 4,608,860
_RS20630
HGI48_RS20635: HGI48_RS20635 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 4,608,857 to 4,609,933
_RS20635
HGI48_RS20640: HGI48_RS20640 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 4,609,940 to 4,610,788
_RS20640
HGI48_RS20645: HGI48_RS20645 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 4,610,800 to 4,611,687
_RS20645
Position (kb) 4608
4609
4610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4607.904 kb on + strand at 4607.904 kb on + strand at 4607.904 kb on + strand at 4607.905 kb on - strand at 4607.905 kb on - strand at 4607.905 kb on - strand at 4607.905 kb on - strand at 4607.928 kb on - strand at 4608.019 kb on + strand at 4608.020 kb on - strand at 4608.077 kb on - strand at 4608.091 kb on - strand at 4608.096 kb on + strand at 4608.106 kb on + strand at 4608.106 kb on + strand at 4608.107 kb on - strand at 4608.107 kb on - strand at 4608.122 kb on + strand at 4608.215 kb on + strand, within HGI48_RS20630 at 4608.216 kb on - strand, within HGI48_RS20630 at 4608.217 kb on + strand, within HGI48_RS20630 at 4608.217 kb on + strand at 4608.217 kb on + strand, within HGI48_RS20630 at 4608.217 kb on + strand, within HGI48_RS20630 at 4608.217 kb on + strand, within HGI48_RS20630 at 4608.218 kb on - strand, within HGI48_RS20630 at 4608.218 kb on - strand, within HGI48_RS20630 at 4608.284 kb on + strand, within HGI48_RS20630 at 4608.284 kb on + strand, within HGI48_RS20630 at 4608.285 kb on - strand, within HGI48_RS20630 at 4608.285 kb on - strand, within HGI48_RS20630 at 4608.443 kb on + strand, within HGI48_RS20630 at 4608.444 kb on - strand, within HGI48_RS20630 at 4608.444 kb on - strand, within HGI48_RS20630 at 4608.539 kb on - strand, within HGI48_RS20630 at 4608.893 kb on + strand at 4608.893 kb on + strand at 4608.893 kb on + strand at 4608.894 kb on - strand at 4608.894 kb on - strand at 4608.894 kb on - strand at 4608.894 kb on - strand at 4608.894 kb on - strand at 4608.895 kb on + strand at 4608.895 kb on + strand at 4608.977 kb on - strand, within HGI48_RS20635 at 4609.096 kb on + strand, within HGI48_RS20635 at 4609.266 kb on + strand, within HGI48_RS20635 at 4609.365 kb on + strand, within HGI48_RS20635 at 4609.365 kb on + strand, within HGI48_RS20635 at 4609.366 kb on - strand, within HGI48_RS20635 at 4609.366 kb on - strand, within HGI48_RS20635 at 4609.366 kb on - strand, within HGI48_RS20635 at 4609.366 kb on - strand, within HGI48_RS20635 at 4609.573 kb on + strand, within HGI48_RS20635 at 4609.573 kb on + strand, within HGI48_RS20635 at 4609.638 kb on + strand, within HGI48_RS20635 at 4609.638 kb on + strand, within HGI48_RS20635 at 4609.639 kb on - strand, within HGI48_RS20635 at 4609.680 kb on + strand at 4609.680 kb on + strand, within HGI48_RS20635 at 4609.703 kb on - strand, within HGI48_RS20635 at 4609.749 kb on + strand, within HGI48_RS20635 at 4609.749 kb on + strand, within HGI48_RS20635 at 4609.750 kb on - strand, within HGI48_RS20635 at 4609.750 kb on - strand, within HGI48_RS20635 at 4609.750 kb on - strand at 4609.750 kb on - strand at 4609.750 kb on - strand, within HGI48_RS20635 at 4609.750 kb on - strand, within HGI48_RS20635 at 4609.750 kb on - strand, within HGI48_RS20635 at 4609.750 kb on - strand at 4609.754 kb on - strand, within HGI48_RS20635 at 4609.754 kb on - strand, within HGI48_RS20635 at 4609.896 kb on + strand at 4609.896 kb on + strand at 4609.897 kb on - strand at 4609.897 kb on - strand at 4609.922 kb on + strand at 4609.933 kb on + strand at 4609.941 kb on + strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4609.942 kb on - strand at 4610.142 kb on + strand, within HGI48_RS20640 at 4610.142 kb on + strand, within HGI48_RS20640 at 4610.142 kb on + strand at 4610.157 kb on + strand, within HGI48_RS20640 at 4610.157 kb on + strand, within HGI48_RS20640 at 4610.161 kb on + strand, within HGI48_RS20640 at 4610.162 kb on - strand, within HGI48_RS20640 at 4610.162 kb on - strand, within HGI48_RS20640 at 4610.287 kb on + strand, within HGI48_RS20640 at 4610.287 kb on + strand, within HGI48_RS20640 at 4610.287 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.352 kb on + strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.353 kb on - strand, within HGI48_RS20640 at 4610.356 kb on + strand, within HGI48_RS20640 at 4610.356 kb on + strand, within HGI48_RS20640 at 4610.356 kb on + strand, within HGI48_RS20640 at 4610.356 kb on + strand, within HGI48_RS20640 at 4610.357 kb on - strand, within HGI48_RS20640 at 4610.357 kb on - strand, within HGI48_RS20640 at 4610.357 kb on - strand, within HGI48_RS20640 at 4610.357 kb on - strand, within HGI48_RS20640 at 4610.357 kb on - strand, within HGI48_RS20640 at 4610.357 kb on - strand, within HGI48_RS20640 at 4610.475 kb on + strand, within HGI48_RS20640 at 4610.551 kb on + strand, within HGI48_RS20640 at 4610.608 kb on + strand, within HGI48_RS20640 at 4610.609 kb on - strand, within HGI48_RS20640 at 4610.609 kb on - strand, within HGI48_RS20640 at 4610.644 kb on + strand, within HGI48_RS20640 at 4610.645 kb on - strand, within HGI48_RS20640 at 4610.706 kb on + strand at 4610.707 kb on - strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.759 kb on + strand at 4610.760 kb on - strand at 4610.760 kb on - strand at 4610.760 kb on - strand at 4610.760 kb on - strand at 4610.760 kb on - strand at 4610.760 kb on - strand at 4610.760 kb on - strand at 4610.761 kb on + strand at 4610.762 kb on - strand at 4610.762 kb on - strand at 4610.807 kb on + strand at 4610.807 kb on + strand at 4610.808 kb on - strand at 4610.811 kb on + strand at 4610.812 kb on - strand at 4610.812 kb on - strand at 4610.812 kb on - strand at 4610.817 kb on + strand at 4610.817 kb on + strand at 4610.817 kb on + strand at 4610.817 kb on + strand at 4610.817 kb on + strand at 4610.817 kb on + strand at 4610.817 kb on + strand at 4610.817 kb on + strand at 4610.818 kb on - strand at 4610.818 kb on - strand at 4610.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,607,904 + +0.4 4,607,904 + +0.4 4,607,904 + +0.1 4,607,905 - -1.3 4,607,905 - -0.8 4,607,905 - -0.1 4,607,905 - +1.4 4,607,928 - +0.5 4,608,019 + +0.1 4,608,020 - -0.5 4,608,077 - -1.4 4,608,091 - -0.7 4,608,096 + +0.1 4,608,106 + -0.7 4,608,106 + -0.6 4,608,107 - -0.1 4,608,107 - +0.6 4,608,122 + +0.6 4,608,215 + HGI48_RS20630 0.14 -0.5 4,608,216 - HGI48_RS20630 0.14 +0.0 4,608,217 + HGI48_RS20630 0.14 +0.2 4,608,217 + +0.9 4,608,217 + HGI48_RS20630 0.14 +0.1 4,608,217 + HGI48_RS20630 0.14 -0.2 4,608,217 + HGI48_RS20630 0.14 -0.6 4,608,218 - HGI48_RS20630 0.14 +0.7 4,608,218 - HGI48_RS20630 0.14 +0.3 4,608,284 + HGI48_RS20630 0.23 -0.3 4,608,284 + HGI48_RS20630 0.23 -0.2 4,608,285 - HGI48_RS20630 0.23 -1.1 4,608,285 - HGI48_RS20630 0.23 -1.1 4,608,443 + HGI48_RS20630 0.44 -1.0 4,608,444 - HGI48_RS20630 0.44 +0.1 4,608,444 - HGI48_RS20630 0.44 -0.7 4,608,539 - HGI48_RS20630 0.57 -0.4 4,608,893 + +0.1 4,608,893 + +0.0 4,608,893 + -0.4 4,608,894 - -0.1 4,608,894 - -0.7 4,608,894 - -0.1 4,608,894 - -0.8 4,608,894 - +0.6 4,608,895 + -0.3 4,608,895 + +1.4 4,608,977 - HGI48_RS20635 0.11 -1.7 4,609,096 + HGI48_RS20635 0.22 -0.7 4,609,266 + HGI48_RS20635 0.38 +0.1 4,609,365 + HGI48_RS20635 0.47 +0.4 4,609,365 + HGI48_RS20635 0.47 +0.5 4,609,366 - HGI48_RS20635 0.47 +1.1 4,609,366 - HGI48_RS20635 0.47 +0.1 4,609,366 - HGI48_RS20635 0.47 +1.0 4,609,366 - HGI48_RS20635 0.47 +1.4 4,609,573 + HGI48_RS20635 0.66 -0.1 4,609,573 + HGI48_RS20635 0.66 +0.6 4,609,638 + HGI48_RS20635 0.73 +0.1 4,609,638 + HGI48_RS20635 0.73 -0.4 4,609,639 - HGI48_RS20635 0.73 -0.1 4,609,680 + +2.7 4,609,680 + HGI48_RS20635 0.76 +0.6 4,609,703 - HGI48_RS20635 0.79 +0.2 4,609,749 + HGI48_RS20635 0.83 -0.1 4,609,749 + HGI48_RS20635 0.83 -0.7 4,609,750 - HGI48_RS20635 0.83 -1.3 4,609,750 - HGI48_RS20635 0.83 -0.7 4,609,750 - -0.7 4,609,750 - +0.3 4,609,750 - HGI48_RS20635 0.83 +0.3 4,609,750 - HGI48_RS20635 0.83 -0.4 4,609,750 - HGI48_RS20635 0.83 -0.1 4,609,750 - -0.1 4,609,754 - HGI48_RS20635 0.83 -1.1 4,609,754 - HGI48_RS20635 0.83 -0.3 4,609,896 + -0.9 4,609,896 + -0.6 4,609,897 - -2.6 4,609,897 - +0.1 4,609,922 + -0.6 4,609,933 + -0.3 4,609,941 + +0.5 4,609,942 - +0.2 4,609,942 - -1.4 4,609,942 - +0.4 4,609,942 - -0.1 4,609,942 - -0.1 4,609,942 - -0.5 4,609,942 - -0.1 4,609,942 - +0.9 4,609,942 - -0.1 4,610,142 + HGI48_RS20640 0.24 +0.4 4,610,142 + HGI48_RS20640 0.24 -1.1 4,610,142 + +0.3 4,610,157 + HGI48_RS20640 0.26 -0.4 4,610,157 + HGI48_RS20640 0.26 -0.1 4,610,161 + HGI48_RS20640 0.26 -1.5 4,610,162 - HGI48_RS20640 0.26 +1.1 4,610,162 - HGI48_RS20640 0.26 -1.3 4,610,287 + HGI48_RS20640 0.41 -0.1 4,610,287 + HGI48_RS20640 0.41 -0.2 4,610,287 + HGI48_RS20640 0.41 +0.6 4,610,352 + HGI48_RS20640 0.49 +0.4 4,610,352 + HGI48_RS20640 0.49 +0.0 4,610,352 + HGI48_RS20640 0.49 -0.5 4,610,352 + HGI48_RS20640 0.49 -0.4 4,610,352 + HGI48_RS20640 0.49 -0.5 4,610,352 + HGI48_RS20640 0.49 -1.1 4,610,352 + HGI48_RS20640 0.49 -0.8 4,610,352 + HGI48_RS20640 0.49 +0.3 4,610,352 + HGI48_RS20640 0.49 -1.0 4,610,352 + HGI48_RS20640 0.49 -2.0 4,610,353 - HGI48_RS20640 0.49 -0.1 4,610,353 - HGI48_RS20640 0.49 +0.1 4,610,353 - HGI48_RS20640 0.49 +0.4 4,610,353 - HGI48_RS20640 0.49 -0.8 4,610,353 - HGI48_RS20640 0.49 +0.9 4,610,353 - HGI48_RS20640 0.49 -0.4 4,610,353 - HGI48_RS20640 0.49 -0.1 4,610,353 - HGI48_RS20640 0.49 +1.0 4,610,353 - HGI48_RS20640 0.49 -1.3 4,610,353 - HGI48_RS20640 0.49 +0.4 4,610,353 - HGI48_RS20640 0.49 -0.9 4,610,353 - HGI48_RS20640 0.49 +0.4 4,610,353 - HGI48_RS20640 0.49 -0.3 4,610,356 + HGI48_RS20640 0.49 +1.0 4,610,356 + HGI48_RS20640 0.49 -0.4 4,610,356 + HGI48_RS20640 0.49 +0.6 4,610,356 + HGI48_RS20640 0.49 -1.6 4,610,357 - HGI48_RS20640 0.49 -0.2 4,610,357 - HGI48_RS20640 0.49 -1.8 4,610,357 - HGI48_RS20640 0.49 -1.0 4,610,357 - HGI48_RS20640 0.49 +0.0 4,610,357 - HGI48_RS20640 0.49 +1.3 4,610,357 - HGI48_RS20640 0.49 +0.6 4,610,475 + HGI48_RS20640 0.63 -0.7 4,610,551 + HGI48_RS20640 0.72 +0.1 4,610,608 + HGI48_RS20640 0.79 +0.7 4,610,609 - HGI48_RS20640 0.79 +0.5 4,610,609 - HGI48_RS20640 0.79 -2.1 4,610,644 + HGI48_RS20640 0.83 -0.4 4,610,645 - HGI48_RS20640 0.83 +0.5 4,610,706 + +0.1 4,610,707 - -0.4 4,610,759 + -2.4 4,610,759 + -0.7 4,610,759 + +1.6 4,610,759 + +0.4 4,610,759 + -0.3 4,610,759 + -0.6 4,610,759 + +1.0 4,610,759 + +0.2 4,610,759 + -2.8 4,610,759 + -0.1 4,610,759 + -0.6 4,610,760 - -1.6 4,610,760 - -0.7 4,610,760 - -2.0 4,610,760 - -0.5 4,610,760 - -0.6 4,610,760 - +0.3 4,610,760 - -0.2 4,610,761 + +0.7 4,610,762 - -1.7 4,610,762 - -0.2 4,610,807 + +0.2 4,610,807 + +0.4 4,610,808 - -0.6 4,610,811 + -0.6 4,610,812 - -0.2 4,610,812 - -2.8 4,610,812 - -0.1 4,610,817 + +0.1 4,610,817 + +1.3 4,610,817 + -0.4 4,610,817 + -1.5 4,610,817 + -1.5 4,610,817 + -0.3 4,610,817 + -0.4 4,610,817 + -0.6 4,610,818 - -0.9 4,610,818 - -1.7 4,610,818 - +0.4
Or see this region's nucleotide sequence