Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20545

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,590,115	+		HGI48_RS20535	0.33	+0.2
4,590,151	+		HGI48_RS20535	0.37	-0.3
4,590,151	+		HGI48_RS20535	0.37	+0.3
4,590,151	+		HGI48_RS20535	0.37	-1.8
4,590,152	-		HGI48_RS20535	0.37	+0.3
4,590,154	-		HGI48_RS20535	0.37	-1.1
4,590,193	+		HGI48_RS20535	0.42	+0.4
4,590,193	+				-0.7
4,590,193	+		HGI48_RS20535	0.42	-2.5
4,590,193	+		HGI48_RS20535	0.42	-0.4
4,590,194	-				+0.3
4,590,194	-		HGI48_RS20535	0.42	-0.3
4,590,259	-		HGI48_RS20535	0.49	-1.0
4,590,259	-		HGI48_RS20535	0.49	+0.6
4,590,426	-		HGI48_RS20535	0.68	-0.7
4,590,505	+		HGI48_RS20535	0.76	+1.3
4,590,505	+		HGI48_RS20535	0.76	-0.2
4,590,505	+		HGI48_RS20535	0.76	-0.4
4,590,505	+		HGI48_RS20535	0.76	-0.5
4,590,505	+		HGI48_RS20535	0.76	-0.3
4,590,506	-		HGI48_RS20535	0.76	-0.6
4,590,506	-		HGI48_RS20535	0.76	-0.5
4,590,621	+		HGI48_RS20535	0.89	+0.3
4,590,622	-		HGI48_RS20535	0.89	+0.1
4,590,633	+				+0.1
4,590,633	+				-0.4
4,590,633	+				-1.1
4,590,634	-				+0.6
4,590,718	+				+0.0
4,590,719	-				-0.5
4,590,723	+				-0.1
4,590,724	-				+1.1
4,590,724	-				-0.3
4,590,745	+				+2.0
4,590,748	+				+0.3
4,590,748	+				-1.0
4,590,748	+				-0.6
4,590,748	+				-0.5
4,590,749	-				+0.9
4,590,749	-				+0.5
4,590,749	-				+0.0
4,590,749	-				-0.7
4,590,749	-				+0.2
4,590,821	+				+1.1
4,590,821	+				-0.1
4,590,821	+				+0.2
4,590,821	+				-1.1
4,590,822	-				-0.1
4,590,822	-				-0.0
4,591,095	+				+0.1
4,591,096	-				-0.7
4,591,096	-				+0.9
4,591,096	-				-0.5
4,591,097	+				-0.1
4,591,097	+				+0.6
4,591,097	+				+0.4
4,591,098	-				+0.3
4,591,098	-				+1.0
4,591,098	-				-0.7
4,591,112	+				-1.1
4,591,113	-				-0.1
4,591,171	+		HGI48_RS20545	0.12	-1.6
4,591,172	-		HGI48_RS20545	0.13	-2.1
4,591,172	-		HGI48_RS20545	0.13	-0.7
4,591,187	+		HGI48_RS20545	0.16	-1.5
4,591,188	-		HGI48_RS20545	0.16	-0.3
4,591,343	+		HGI48_RS20545	0.49	-0.5
4,591,343	+		HGI48_RS20545	0.49	-0.7
4,591,344	-		HGI48_RS20545	0.50	-1.5
4,591,344	-		HGI48_RS20545	0.50	-1.1
4,591,571	+				+1.6
4,591,571	+				-1.0
4,591,572	-				+1.9
4,591,575	+				-1.1
4,591,576	-				-1.0
4,591,576	-				+0.7
4,591,604	-				+0.3
4,591,604	-				+0.4
4,591,614	+				+0.1
4,591,614	+				-1.1
4,591,614	+				+0.1
4,591,615	-				+0.2
4,591,615	-				+0.9
4,591,637	+				-1.3
4,591,638	-				-0.1
4,591,668	-				-1.5
4,591,668	-				+0.2
4,591,690	-				+0.9
4,591,691	+				+1.9
4,591,691	+				-0.5
4,591,691	+				-0.3
4,591,691	+				-1.0
4,591,691	+				+0.7
4,591,691	+				+0.9
4,591,692	-				-0.1
4,591,692	-				-0.4
4,591,692	-				+1.3
4,591,692	-				-0.8
4,591,692	-				-1.0
4,591,692	-				-0.1
4,591,692	-				-1.7
4,591,695	+				-0.7
4,591,696	-				+0.9
4,591,741	+				+0.6
4,591,741	+				-0.4
4,591,742	-				+0.9
4,591,742	-				-0.7
4,591,742	-				-0.5
4,591,749	+				+0.9
4,591,750	-				-2.2
4,591,764	-				-0.0
4,591,867	-		HGI48_RS20550	0.17	+0.1
4,591,995	-		HGI48_RS20550	0.28	+0.6
4,592,044	-				+2.2
4,592,110	-		HGI48_RS20550	0.39	-1.1
4,592,112	+		HGI48_RS20550	0.39	-1.1
4,592,113	-		HGI48_RS20550	0.39	-1.7
4,592,113	-		HGI48_RS20550	0.39	+0.5
4,592,122	+				+0.3
4,592,122	+		HGI48_RS20550	0.40	-0.3
4,592,123	-		HGI48_RS20550	0.40	-0.1
4,592,123	-		HGI48_RS20550	0.40	-0.4
4,592,203	-		HGI48_RS20550	0.47	-0.1
4,592,324	+		HGI48_RS20550	0.57	+1.0
4,592,353	+		HGI48_RS20550	0.60	-0.5
4,592,353	+		HGI48_RS20550	0.60	+1.1
4,592,353	+		HGI48_RS20550	0.60	+0.4
4,592,353	+		HGI48_RS20550	0.60	+0.2
4,592,353	+		HGI48_RS20550	0.60	-1.5
4,592,353	+		HGI48_RS20550	0.60	-0.2
4,592,353	+		HGI48_RS20550	0.60	+0.4
4,592,354	-		HGI48_RS20550	0.60	-0.7
4,592,354	-		HGI48_RS20550	0.60	+0.1
4,592,354	-		HGI48_RS20550	0.60	-0.5
4,592,357	+		HGI48_RS20550	0.60	-0.1
4,592,357	+		HGI48_RS20550	0.60	-0.6
4,592,357	+		HGI48_RS20550	0.60	+0.9
4,592,357	+		HGI48_RS20550	0.60	-1.0
4,592,357	+		HGI48_RS20550	0.60	-0.3
4,592,358	-		HGI48_RS20550	0.60	+0.9
4,592,358	-		HGI48_RS20550	0.60	-0.1
4,592,479	-		HGI48_RS20550	0.71	+2.4
4,592,480	+		HGI48_RS20550	0.71	-0.0
4,592,480	+		HGI48_RS20550	0.71	-1.1
4,592,480	+		HGI48_RS20550	0.71	+0.1
4,592,480	+				+1.3
4,592,480	+		HGI48_RS20550	0.71	-0.2
4,592,480	+		HGI48_RS20550	0.71	-0.3
4,592,480	+		HGI48_RS20550	0.71	+0.4
4,592,481	-		HGI48_RS20550	0.71	-1.1
4,592,481	-				+1.4
4,592,481	-		HGI48_RS20550	0.71	-0.5
4,592,481	-		HGI48_RS20550	0.71	+1.1
4,592,529	-		HGI48_RS20550	0.75	+1.1