Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20075 and HGI48_RS20080 overlap by 4 nucleotides HGI48_RS20080 and HGI48_RS20085 are separated by 74 nucleotides
HGI48_RS20075: HGI48_RS20075 - hydroxymethylbilane synthase, at 4,487,706 to 4,488,647
_RS20075
HGI48_RS20080: HGI48_RS20080 - uroporphyrinogen-III synthase, at 4,488,644 to 4,489,384
_RS20080
HGI48_RS20085: HGI48_RS20085 - uroporphyrinogen-III C-methyltransferase, at 4,489,459 to 4,490,586
_RS20085
Position (kb)
4488
4489
4490 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4487.671 kb on + strand at 4487.672 kb on - strand at 4487.672 kb on - strand at 4487.672 kb on - strand at 4489.408 kb on + strand at 4489.409 kb on - strand at 4489.428 kb on + strand at 4489.428 kb on + strand at 4489.428 kb on + strand at 4489.428 kb on + strand at 4489.428 kb on + strand at 4489.428 kb on + strand at 4489.429 kb on - strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.445 kb on + strand at 4489.446 kb on - strand at 4489.446 kb on - strand at 4489.446 kb on - strand at 4489.446 kb on - strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.452 kb on + strand at 4489.453 kb on - strand at 4489.453 kb on - strand at 4489.453 kb on - strand at 4489.458 kb on + strand at 4489.458 kb on + strand at 4489.458 kb on + strand at 4489.459 kb on - strand at 4489.473 kb on + strand at 4489.474 kb on - strand at 4489.621 kb on + strand, within HGI48_RS20085 at 4489.622 kb on - strand, within HGI48_RS20085 at 4489.628 kb on - strand, within HGI48_RS20085 at 4489.628 kb on - strand, within HGI48_RS20085 at 4489.883 kb on + strand, within HGI48_RS20085 at 4490.291 kb on - strand, within HGI48_RS20085 at 4490.291 kb on - strand, within HGI48_RS20085
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,487,671 + +0.6 4,487,672 - -0.9 4,487,672 - -0.6 4,487,672 - -0.6 4,489,408 + +0.2 4,489,409 - -1.2 4,489,428 + -1.2 4,489,428 + +0.6 4,489,428 + -0.4 4,489,428 + -1.0 4,489,428 + +0.5 4,489,428 + -0.1 4,489,429 - +0.1 4,489,445 + +0.8 4,489,445 + -1.8 4,489,445 + -0.6 4,489,445 + +0.2 4,489,445 + +0.2 4,489,445 + +0.7 4,489,445 + -2.3 4,489,445 + +1.6 4,489,445 + -1.5 4,489,446 - -2.3 4,489,446 - -1.8 4,489,446 - -1.8 4,489,446 - -1.2 4,489,452 + -0.3 4,489,452 + -0.5 4,489,452 + -1.5 4,489,452 + +0.8 4,489,452 + -1.3 4,489,452 + +0.4 4,489,452 + -1.8 4,489,452 + -0.6 4,489,452 + -0.7 4,489,452 + +0.0 4,489,453 - +0.5 4,489,453 - +0.8 4,489,453 - +0.5 4,489,458 + -1.2 4,489,458 + -0.5 4,489,458 + -0.8 4,489,459 - -1.3 4,489,473 + +0.8 4,489,474 - -0.5 4,489,621 + HGI48_RS20085 0.14 -1.7 4,489,622 - HGI48_RS20085 0.14 -0.5 4,489,628 - HGI48_RS20085 0.15 +0.3 4,489,628 - HGI48_RS20085 0.15 -2.9 4,489,883 + HGI48_RS20085 0.38 -0.0 4,490,291 - HGI48_RS20085 0.74 -1.0 4,490,291 - HGI48_RS20085 0.74 +0.1
Or see this region's nucleotide sequence