Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20035 and HGI48_RS20040 are separated by 86 nucleotides HGI48_RS20040 and HGI48_RS20045 overlap by 1 nucleotides HGI48_RS20045 and HGI48_RS20050 overlap by 4 nucleotides HGI48_RS20050 and HGI48_RS20055 overlap by 4 nucleotides
HGI48_RS20035: HGI48_RS20035 - DNA helicase II, at 4,478,684 to 4,480,846
_RS20035
HGI48_RS20040: HGI48_RS20040 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,480,933 to 4,481,649
_RS20040
HGI48_RS20045: HGI48_RS20045 - tyrosine recombinase XerC, at 4,481,649 to 4,482,557
_RS20045
HGI48_RS20050: HGI48_RS20050 - DUF484 domain-containing protein, at 4,482,554 to 4,483,255
_RS20050
HGI48_RS20055: HGI48_RS20055 - diaminopimelate epimerase, at 4,483,252 to 4,484,076
_RS20055
Position (kb) 4481
4482
4483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4480.684 kb on - strand at 4480.767 kb on - strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.846 kb on + strand at 4480.846 kb on + strand at 4480.847 kb on - strand at 4480.912 kb on + strand at 4480.913 kb on - strand at 4480.913 kb on - strand at 4480.934 kb on + strand at 4480.934 kb on + strand at 4480.937 kb on - strand at 4480.972 kb on + strand at 4481.029 kb on - strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.116 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.145 kb on - strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.445 kb on - strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.581 kb on - strand at 4481.581 kb on - strand at 4481.620 kb on - strand at 4481.645 kb on + strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.657 kb on + strand at 4481.657 kb on + strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.724 kb on - strand at 4481.726 kb on - strand at 4481.839 kb on - strand, within HGI48_RS20045 at 4481.890 kb on - strand, within HGI48_RS20045 at 4481.906 kb on + strand, within HGI48_RS20045 at 4481.907 kb on - strand, within HGI48_RS20045 at 4482.167 kb on + strand, within HGI48_RS20045 at 4482.463 kb on + strand, within HGI48_RS20045 at 4482.558 kb on - strand at 4482.558 kb on - strand at 4482.777 kb on + strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.805 kb on + strand, within HGI48_RS20050 at 4482.995 kb on + strand, within HGI48_RS20050 at 4482.995 kb on + strand, within HGI48_RS20050 at 4482.995 kb on + strand, within HGI48_RS20050 at 4482.996 kb on - strand, within HGI48_RS20050 at 4483.046 kb on + strand at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.047 kb on - strand at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.134 kb on - strand, within HGI48_RS20050 at 4483.194 kb on + strand at 4483.194 kb on + strand at 4483.195 kb on - strand at 4483.195 kb on - strand at 4483.255 kb on + strand at 4483.263 kb on + strand at 4483.264 kb on - strand at 4483.264 kb on - strand at 4483.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,480,684 - -0.2 4,480,767 - -0.2 4,480,838 + -0.3 4,480,838 + -2.8 4,480,838 + +1.4 4,480,838 + +0.6 4,480,838 + -1.2 4,480,838 + -0.2 4,480,839 - +0.8 4,480,839 - -1.8 4,480,839 - -1.2 4,480,839 - +0.3 4,480,839 - +0.0 4,480,846 + +0.0 4,480,846 + -0.8 4,480,847 - -1.2 4,480,912 + +1.4 4,480,913 - -0.6 4,480,913 - -0.2 4,480,934 + +0.8 4,480,934 + +0.4 4,480,937 - -3.1 4,480,972 + -0.8 4,481,029 - HGI48_RS20040 0.13 +0.7 4,481,044 + HGI48_RS20040 0.15 -0.5 4,481,044 + HGI48_RS20040 0.15 -0.9 4,481,116 + HGI48_RS20040 0.26 +0.5 4,481,144 + HGI48_RS20040 0.29 +0.5 4,481,144 + HGI48_RS20040 0.29 -0.6 4,481,144 + HGI48_RS20040 0.29 -0.2 4,481,144 + HGI48_RS20040 0.29 -2.6 4,481,145 - HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 -0.5 4,481,148 + HGI48_RS20040 0.30 -0.1 4,481,148 + HGI48_RS20040 0.30 -1.2 4,481,148 + HGI48_RS20040 0.30 -2.3 4,481,148 + -0.2 4,481,148 + HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 -1.0 4,481,148 + HGI48_RS20040 0.30 -0.0 4,481,148 + HGI48_RS20040 0.30 +0.3 4,481,148 + HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 -0.4 4,481,148 + HGI48_RS20040 0.30 -0.4 4,481,148 + HGI48_RS20040 0.30 -0.2 4,481,148 + HGI48_RS20040 0.30 -0.5 4,481,148 + HGI48_RS20040 0.30 -1.5 4,481,148 + HGI48_RS20040 0.30 -0.2 4,481,148 + HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 +2.2 4,481,149 - HGI48_RS20040 0.30 -1.2 4,481,149 - HGI48_RS20040 0.30 +0.5 4,481,149 - HGI48_RS20040 0.30 +0.3 4,481,149 - +1.8 4,481,149 - HGI48_RS20040 0.30 -0.7 4,481,149 - -0.8 4,481,149 - -0.8 4,481,149 - HGI48_RS20040 0.30 -0.6 4,481,149 - HGI48_RS20040 0.30 +0.8 4,481,149 - HGI48_RS20040 0.30 +0.1 4,481,194 - HGI48_RS20040 0.36 +0.4 4,481,194 - HGI48_RS20040 0.36 -1.2 4,481,204 + HGI48_RS20040 0.38 -1.2 4,481,204 + HGI48_RS20040 0.38 -1.0 4,481,410 + HGI48_RS20040 0.67 +0.2 4,481,410 + HGI48_RS20040 0.67 +0.4 4,481,410 + HGI48_RS20040 0.67 +0.3 4,481,410 + HGI48_RS20040 0.67 +0.7 4,481,411 - HGI48_RS20040 0.67 +1.1 4,481,411 - HGI48_RS20040 0.67 -2.3 4,481,411 - HGI48_RS20040 0.67 -1.8 4,481,411 - HGI48_RS20040 0.67 -1.4 4,481,411 - HGI48_RS20040 0.67 -1.3 4,481,411 - HGI48_RS20040 0.67 -0.8 4,481,411 - HGI48_RS20040 0.67 -0.2 4,481,444 + HGI48_RS20040 0.71 -0.5 4,481,444 + HGI48_RS20040 0.71 +0.6 4,481,445 - HGI48_RS20040 0.71 +0.2 4,481,525 + HGI48_RS20040 0.83 -0.6 4,481,525 + HGI48_RS20040 0.83 -1.5 4,481,576 + HGI48_RS20040 0.90 -1.5 4,481,576 + HGI48_RS20040 0.90 -0.5 4,481,576 + +0.2 4,481,576 + HGI48_RS20040 0.90 +0.1 4,481,576 + HGI48_RS20040 0.90 -2.2 4,481,576 + -0.2 4,481,577 - HGI48_RS20040 0.90 +0.6 4,481,577 - HGI48_RS20040 0.90 -1.2 4,481,577 - HGI48_RS20040 0.90 +0.4 4,481,577 - HGI48_RS20040 0.90 +1.1 4,481,577 - HGI48_RS20040 0.90 -1.3 4,481,577 - HGI48_RS20040 0.90 +0.4 4,481,581 - +0.0 4,481,581 - +0.3 4,481,620 - +0.2 4,481,645 + -0.4 4,481,646 - -0.4 4,481,646 - -1.2 4,481,646 - -0.4 4,481,646 - -1.2 4,481,646 - -0.3 4,481,646 - +0.8 4,481,646 - +0.0 4,481,657 + -0.2 4,481,657 + -0.5 4,481,658 - -1.3 4,481,658 - -0.8 4,481,658 - +1.4 4,481,724 - +0.8 4,481,726 - -0.8 4,481,839 - HGI48_RS20045 0.21 -2.4 4,481,890 - HGI48_RS20045 0.27 -0.8 4,481,906 + HGI48_RS20045 0.28 -0.6 4,481,907 - HGI48_RS20045 0.28 -3.1 4,482,167 + HGI48_RS20045 0.57 -2.3 4,482,463 + HGI48_RS20045 0.90 +0.5 4,482,558 - -1.7 4,482,558 - -0.3 4,482,777 + HGI48_RS20050 0.32 -0.6 4,482,778 - HGI48_RS20050 0.32 -1.0 4,482,778 - HGI48_RS20050 0.32 -0.8 4,482,778 - HGI48_RS20050 0.32 -2.0 4,482,778 - HGI48_RS20050 0.32 -0.4 4,482,805 + HGI48_RS20050 0.36 -0.4 4,482,995 + HGI48_RS20050 0.63 -2.0 4,482,995 + HGI48_RS20050 0.63 -0.9 4,482,995 + HGI48_RS20050 0.63 -2.8 4,482,996 - HGI48_RS20050 0.63 -0.2 4,483,046 + -0.2 4,483,046 + HGI48_RS20050 0.70 +0.5 4,483,046 + HGI48_RS20050 0.70 +0.5 4,483,046 + HGI48_RS20050 0.70 -0.5 4,483,046 + HGI48_RS20050 0.70 -0.3 4,483,047 - HGI48_RS20050 0.70 +1.7 4,483,047 - HGI48_RS20050 0.70 -2.0 4,483,047 - HGI48_RS20050 0.70 +0.4 4,483,047 - -0.2 4,483,047 - HGI48_RS20050 0.70 -0.2 4,483,134 - HGI48_RS20050 0.83 -1.5 4,483,194 + +0.8 4,483,194 + -0.2 4,483,195 - +1.6 4,483,195 - -0.8 4,483,255 + -0.8 4,483,263 + +0.1 4,483,264 - +0.8 4,483,264 - -1.5 4,483,264 - +0.8
Or see this region's nucleotide sequence