Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20030 and HGI48_RS20035 are separated by 369 nucleotides HGI48_RS20035 and HGI48_RS20040 are separated by 86 nucleotides HGI48_RS20040 and HGI48_RS20045 overlap by 1 nucleotides
HGI48_RS20030: HGI48_RS20030 - magnesium/cobalt transporter CorA, at 4,477,364 to 4,478,314
_RS20030
HGI48_RS20035: HGI48_RS20035 - DNA helicase II, at 4,478,684 to 4,480,846
_RS20035
HGI48_RS20040: HGI48_RS20040 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,480,933 to 4,481,649
_RS20040
HGI48_RS20045: HGI48_RS20045 - tyrosine recombinase XerC, at 4,481,649 to 4,482,557
_RS20045
Position (kb) 4478
4479
4480
4481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4477.804 kb on - strand, within HGI48_RS20030 at 4477.860 kb on + strand at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.865 kb on - strand, within HGI48_RS20030 at 4477.865 kb on - strand, within HGI48_RS20030 at 4478.008 kb on + strand, within HGI48_RS20030 at 4478.008 kb on + strand, within HGI48_RS20030 at 4478.008 kb on + strand, within HGI48_RS20030 at 4478.011 kb on - strand, within HGI48_RS20030 at 4478.011 kb on - strand, within HGI48_RS20030 at 4478.076 kb on + strand, within HGI48_RS20030 at 4478.077 kb on - strand at 4478.280 kb on - strand at 4478.314 kb on + strand at 4478.437 kb on - strand at 4478.481 kb on + strand at 4478.481 kb on + strand at 4478.482 kb on - strand at 4478.482 kb on - strand at 4478.482 kb on - strand at 4478.494 kb on + strand at 4478.494 kb on + strand at 4478.494 kb on + strand at 4478.495 kb on - strand at 4478.501 kb on + strand at 4478.557 kb on - strand at 4478.615 kb on + strand at 4478.616 kb on - strand at 4478.616 kb on - strand at 4478.632 kb on + strand at 4478.632 kb on + strand at 4478.685 kb on + strand at 4478.686 kb on - strand at 4478.686 kb on - strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.688 kb on - strand at 4478.688 kb on - strand at 4478.688 kb on - strand at 4478.707 kb on - strand at 4478.786 kb on - strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.838 kb on + strand at 4478.839 kb on - strand at 4478.839 kb on - strand at 4478.915 kb on + strand, within HGI48_RS20035 at 4478.916 kb on - strand at 4479.007 kb on - strand, within HGI48_RS20035 at 4479.049 kb on - strand, within HGI48_RS20035 at 4479.285 kb on + strand, within HGI48_RS20035 at 4479.367 kb on - strand, within HGI48_RS20035 at 4479.367 kb on - strand, within HGI48_RS20035 at 4479.367 kb on - strand, within HGI48_RS20035 at 4479.410 kb on + strand, within HGI48_RS20035 at 4479.411 kb on - strand, within HGI48_RS20035 at 4479.666 kb on + strand at 4479.667 kb on - strand, within HGI48_RS20035 at 4479.717 kb on + strand, within HGI48_RS20035 at 4479.718 kb on - strand, within HGI48_RS20035 at 4480.000 kb on - strand, within HGI48_RS20035 at 4480.000 kb on - strand at 4480.086 kb on + strand, within HGI48_RS20035 at 4480.086 kb on + strand, within HGI48_RS20035 at 4480.204 kb on + strand, within HGI48_RS20035 at 4480.317 kb on + strand at 4480.326 kb on + strand, within HGI48_RS20035 at 4480.362 kb on + strand at 4480.363 kb on - strand, within HGI48_RS20035 at 4480.413 kb on + strand, within HGI48_RS20035 at 4480.684 kb on - strand at 4480.767 kb on - strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.846 kb on + strand at 4480.846 kb on + strand at 4480.847 kb on - strand at 4480.912 kb on + strand at 4480.913 kb on - strand at 4480.913 kb on - strand at 4480.934 kb on + strand at 4480.934 kb on + strand at 4480.937 kb on - strand at 4480.972 kb on + strand at 4481.029 kb on - strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.116 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.145 kb on - strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.445 kb on - strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.581 kb on - strand at 4481.581 kb on - strand at 4481.620 kb on - strand at 4481.645 kb on + strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.657 kb on + strand at 4481.657 kb on + strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.724 kb on - strand at 4481.726 kb on - strand at 4481.839 kb on - strand, within HGI48_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,477,804 - HGI48_RS20030 0.46 -0.2 4,477,860 + +1.4 4,477,860 + HGI48_RS20030 0.52 +0.1 4,477,860 + HGI48_RS20030 0.52 -0.5 4,477,860 + HGI48_RS20030 0.52 +1.5 4,477,860 + HGI48_RS20030 0.52 -0.2 4,477,865 - HGI48_RS20030 0.53 -1.8 4,477,865 - HGI48_RS20030 0.53 -1.0 4,478,008 + HGI48_RS20030 0.68 +0.4 4,478,008 + HGI48_RS20030 0.68 -0.2 4,478,008 + HGI48_RS20030 0.68 -0.2 4,478,011 - HGI48_RS20030 0.68 +0.8 4,478,011 - HGI48_RS20030 0.68 +0.8 4,478,076 + HGI48_RS20030 0.75 +0.1 4,478,077 - +0.2 4,478,280 - -2.0 4,478,314 + +0.8 4,478,437 - -0.2 4,478,481 + +1.2 4,478,481 + +0.5 4,478,482 - +1.6 4,478,482 - -0.4 4,478,482 - -2.2 4,478,494 + +1.6 4,478,494 + +0.8 4,478,494 + -0.2 4,478,495 - +0.2 4,478,501 + -0.3 4,478,557 - -0.6 4,478,615 + +0.2 4,478,616 - +0.0 4,478,616 - +1.1 4,478,632 + -0.2 4,478,632 + +0.4 4,478,685 + +0.4 4,478,686 - -2.5 4,478,686 - -0.4 4,478,687 + -0.2 4,478,687 + +0.0 4,478,687 + -1.5 4,478,687 + -1.8 4,478,687 + +0.2 4,478,688 - +1.8 4,478,688 - +0.5 4,478,688 - +1.3 4,478,707 - +1.1 4,478,786 - -0.2 4,478,836 + -1.0 4,478,836 + +1.2 4,478,836 + -2.3 4,478,836 + -0.8 4,478,836 + +0.8 4,478,836 + +1.2 4,478,837 - -0.5 4,478,837 - -1.2 4,478,837 - +0.2 4,478,837 - +0.0 4,478,837 - -1.0 4,478,837 - +0.0 4,478,837 - -0.6 4,478,838 + -1.0 4,478,839 - -0.2 4,478,839 - -0.4 4,478,915 + HGI48_RS20035 0.11 -0.2 4,478,916 - +0.8 4,479,007 - HGI48_RS20035 0.15 -1.6 4,479,049 - HGI48_RS20035 0.17 +0.5 4,479,285 + HGI48_RS20035 0.28 +0.8 4,479,367 - HGI48_RS20035 0.32 -2.9 4,479,367 - HGI48_RS20035 0.32 -1.3 4,479,367 - HGI48_RS20035 0.32 -1.5 4,479,410 + HGI48_RS20035 0.34 -0.4 4,479,411 - HGI48_RS20035 0.34 -0.2 4,479,666 + -0.8 4,479,667 - HGI48_RS20035 0.45 +0.1 4,479,717 + HGI48_RS20035 0.48 +0.0 4,479,718 - HGI48_RS20035 0.48 +1.3 4,480,000 - HGI48_RS20035 0.61 -0.0 4,480,000 - +0.2 4,480,086 + HGI48_RS20035 0.65 -1.2 4,480,086 + HGI48_RS20035 0.65 -1.3 4,480,204 + HGI48_RS20035 0.70 -1.5 4,480,317 + +1.8 4,480,326 + HGI48_RS20035 0.76 -1.2 4,480,362 + +0.8 4,480,363 - HGI48_RS20035 0.78 +1.6 4,480,413 + HGI48_RS20035 0.80 +0.6 4,480,684 - -0.2 4,480,767 - -0.2 4,480,838 + -0.3 4,480,838 + -2.8 4,480,838 + +1.4 4,480,838 + +0.6 4,480,838 + -1.2 4,480,838 + -0.2 4,480,839 - +0.8 4,480,839 - -1.8 4,480,839 - -1.2 4,480,839 - +0.3 4,480,839 - +0.0 4,480,846 + +0.0 4,480,846 + -0.8 4,480,847 - -1.2 4,480,912 + +1.4 4,480,913 - -0.6 4,480,913 - -0.2 4,480,934 + +0.8 4,480,934 + +0.4 4,480,937 - -3.1 4,480,972 + -0.8 4,481,029 - HGI48_RS20040 0.13 +0.7 4,481,044 + HGI48_RS20040 0.15 -0.5 4,481,044 + HGI48_RS20040 0.15 -0.9 4,481,116 + HGI48_RS20040 0.26 +0.5 4,481,144 + HGI48_RS20040 0.29 +0.5 4,481,144 + HGI48_RS20040 0.29 -0.6 4,481,144 + HGI48_RS20040 0.29 -0.2 4,481,144 + HGI48_RS20040 0.29 -2.6 4,481,145 - HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 -0.5 4,481,148 + HGI48_RS20040 0.30 -0.1 4,481,148 + HGI48_RS20040 0.30 -1.2 4,481,148 + HGI48_RS20040 0.30 -2.3 4,481,148 + -0.2 4,481,148 + HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 -1.0 4,481,148 + HGI48_RS20040 0.30 -0.0 4,481,148 + HGI48_RS20040 0.30 +0.3 4,481,148 + HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 -0.4 4,481,148 + HGI48_RS20040 0.30 -0.4 4,481,148 + HGI48_RS20040 0.30 -0.2 4,481,148 + HGI48_RS20040 0.30 -0.5 4,481,148 + HGI48_RS20040 0.30 -1.5 4,481,148 + HGI48_RS20040 0.30 -0.2 4,481,148 + HGI48_RS20040 0.30 -0.8 4,481,148 + HGI48_RS20040 0.30 +2.2 4,481,149 - HGI48_RS20040 0.30 -1.2 4,481,149 - HGI48_RS20040 0.30 +0.5 4,481,149 - HGI48_RS20040 0.30 +0.3 4,481,149 - +1.8 4,481,149 - HGI48_RS20040 0.30 -0.7 4,481,149 - -0.8 4,481,149 - -0.8 4,481,149 - HGI48_RS20040 0.30 -0.6 4,481,149 - HGI48_RS20040 0.30 +0.8 4,481,149 - HGI48_RS20040 0.30 +0.1 4,481,194 - HGI48_RS20040 0.36 +0.4 4,481,194 - HGI48_RS20040 0.36 -1.2 4,481,204 + HGI48_RS20040 0.38 -1.2 4,481,204 + HGI48_RS20040 0.38 -1.0 4,481,410 + HGI48_RS20040 0.67 +0.2 4,481,410 + HGI48_RS20040 0.67 +0.4 4,481,410 + HGI48_RS20040 0.67 +0.3 4,481,410 + HGI48_RS20040 0.67 +0.7 4,481,411 - HGI48_RS20040 0.67 +1.1 4,481,411 - HGI48_RS20040 0.67 -2.3 4,481,411 - HGI48_RS20040 0.67 -1.8 4,481,411 - HGI48_RS20040 0.67 -1.4 4,481,411 - HGI48_RS20040 0.67 -1.3 4,481,411 - HGI48_RS20040 0.67 -0.8 4,481,411 - HGI48_RS20040 0.67 -0.2 4,481,444 + HGI48_RS20040 0.71 -0.5 4,481,444 + HGI48_RS20040 0.71 +0.6 4,481,445 - HGI48_RS20040 0.71 +0.2 4,481,525 + HGI48_RS20040 0.83 -0.6 4,481,525 + HGI48_RS20040 0.83 -1.5 4,481,576 + HGI48_RS20040 0.90 -1.5 4,481,576 + HGI48_RS20040 0.90 -0.5 4,481,576 + +0.2 4,481,576 + HGI48_RS20040 0.90 +0.1 4,481,576 + HGI48_RS20040 0.90 -2.2 4,481,576 + -0.2 4,481,577 - HGI48_RS20040 0.90 +0.6 4,481,577 - HGI48_RS20040 0.90 -1.2 4,481,577 - HGI48_RS20040 0.90 +0.4 4,481,577 - HGI48_RS20040 0.90 +1.1 4,481,577 - HGI48_RS20040 0.90 -1.3 4,481,577 - HGI48_RS20040 0.90 +0.4 4,481,581 - +0.0 4,481,581 - +0.3 4,481,620 - +0.2 4,481,645 + -0.4 4,481,646 - -0.4 4,481,646 - -1.2 4,481,646 - -0.4 4,481,646 - -1.2 4,481,646 - -0.3 4,481,646 - +0.8 4,481,646 - +0.0 4,481,657 + -0.2 4,481,657 + -0.5 4,481,658 - -1.3 4,481,658 - -0.8 4,481,658 - +1.4 4,481,724 - +0.8 4,481,726 - -0.8 4,481,839 - HGI48_RS20045 0.21 -2.4
Or see this region's nucleotide sequence