Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19675 and HGI48_RS19680 are separated by 52 nucleotides HGI48_RS19680 and HGI48_RS19685 are separated by 482 nucleotides
HGI48_RS19675: HGI48_RS19675 - 3-dehydroquinate synthase, at 4,392,789 to 4,393,874
_RS19675
HGI48_RS19680: HGI48_RS19680 - shikimate kinase AroK, at 4,393,927 to 4,394,448
_RS19680
HGI48_RS19685: HGI48_RS19685 - DNA uptake porin HofQ, at 4,394,931 to 4,396,235
_RS19685
Position (kb) 4393
4394
4395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4394.482 kb on - strand at 4394.499 kb on - strand at 4394.499 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.538 kb on - strand at 4394.645 kb on + strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.666 kb on + strand at 4394.667 kb on - strand at 4394.667 kb on - strand at 4394.708 kb on + strand at 4394.708 kb on + strand at 4394.717 kb on + strand at 4394.718 kb on - strand at 4394.719 kb on + strand at 4394.720 kb on - strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.771 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.806 kb on - strand at 4394.806 kb on - strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.840 kb on + strand at 4394.850 kb on + strand at 4394.851 kb on - strand at 4394.888 kb on - strand at 4394.978 kb on + strand at 4394.979 kb on - strand at 4395.037 kb on - strand at 4395.162 kb on - strand, within HGI48_RS19685 at 4395.175 kb on - strand, within HGI48_RS19685 at 4395.215 kb on + strand, within HGI48_RS19685 at 4395.215 kb on + strand, within HGI48_RS19685 at 4395.215 kb on + strand, within HGI48_RS19685 at 4395.216 kb on - strand, within HGI48_RS19685 at 4395.216 kb on - strand, within HGI48_RS19685 at 4395.242 kb on + strand, within HGI48_RS19685 at 4395.336 kb on + strand, within HGI48_RS19685 at 4395.392 kb on + strand, within HGI48_RS19685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,394,482 - -0.0 4,394,499 - +0.1 4,394,499 - -0.5 4,394,516 - +0.5 4,394,516 - +0.3 4,394,516 - -0.1 4,394,538 - -0.5 4,394,645 + -1.8 4,394,646 - -0.3 4,394,646 - -1.0 4,394,646 - -0.4 4,394,646 - +1.6 4,394,666 + +0.4 4,394,667 - -0.2 4,394,667 - -1.2 4,394,708 + -0.2 4,394,708 + -0.8 4,394,717 + +0.4 4,394,718 - +1.1 4,394,719 + -0.6 4,394,720 - +0.5 4,394,732 + +0.0 4,394,732 + +0.8 4,394,732 + -1.8 4,394,733 - -0.6 4,394,733 - -0.3 4,394,733 - +1.1 4,394,766 + +1.4 4,394,766 + -1.8 4,394,766 + +2.0 4,394,766 + +0.4 4,394,766 + -0.2 4,394,767 - +0.9 4,394,767 - -2.8 4,394,767 - +0.8 4,394,767 - -0.2 4,394,771 + +0.8 4,394,805 + -1.2 4,394,805 + -1.2 4,394,805 + +1.8 4,394,806 - +0.8 4,394,806 - +0.8 4,394,809 + +0.2 4,394,809 + +0.3 4,394,809 + -1.2 4,394,809 + +0.0 4,394,809 + -1.3 4,394,809 + +0.8 4,394,810 - +1.1 4,394,810 - -1.6 4,394,810 - -0.1 4,394,810 - +0.6 4,394,810 - +0.1 4,394,810 - +0.4 4,394,840 + +0.2 4,394,850 + +0.4 4,394,851 - -1.3 4,394,888 - +0.5 4,394,978 + +0.8 4,394,979 - +0.3 4,395,037 - +0.8 4,395,162 - HGI48_RS19685 0.18 +0.1 4,395,175 - HGI48_RS19685 0.19 +0.8 4,395,215 + HGI48_RS19685 0.22 -0.9 4,395,215 + HGI48_RS19685 0.22 -0.8 4,395,215 + HGI48_RS19685 0.22 -0.4 4,395,216 - HGI48_RS19685 0.22 +0.2 4,395,216 - HGI48_RS19685 0.22 -0.7 4,395,242 + HGI48_RS19685 0.24 +0.8 4,395,336 + HGI48_RS19685 0.31 -1.1 4,395,392 + HGI48_RS19685 0.35 +1.3
Or see this region's nucleotide sequence