Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19670 and HGI48_RS19675 are separated by 135 nucleotides HGI48_RS19675 and HGI48_RS19680 are separated by 52 nucleotides
HGI48_RS19670: HGI48_RS19670 - SPOR domain-containing protein, at 4,391,601 to 4,392,653
_RS19670
HGI48_RS19675: HGI48_RS19675 - 3-dehydroquinate synthase, at 4,392,789 to 4,393,874
_RS19675
HGI48_RS19680: HGI48_RS19680 - shikimate kinase AroK, at 4,393,927 to 4,394,448
_RS19680
Position (kb) 4392
4393
4394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4391.801 kb on - strand at 4391.801 kb on - strand, within HGI48_RS19670 at 4391.801 kb on - strand at 4391.832 kb on - strand, within HGI48_RS19670 at 4391.847 kb on - strand, within HGI48_RS19670 at 4391.961 kb on - strand at 4391.976 kb on - strand, within HGI48_RS19670 at 4392.393 kb on - strand, within HGI48_RS19670 at 4392.393 kb on - strand, within HGI48_RS19670 at 4392.453 kb on - strand, within HGI48_RS19670 at 4392.677 kb on - strand at 4394.482 kb on - strand at 4394.499 kb on - strand at 4394.499 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.538 kb on - strand at 4394.645 kb on + strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.666 kb on + strand at 4394.667 kb on - strand at 4394.667 kb on - strand at 4394.708 kb on + strand at 4394.708 kb on + strand at 4394.717 kb on + strand at 4394.718 kb on - strand at 4394.719 kb on + strand at 4394.720 kb on - strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.771 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.806 kb on - strand at 4394.806 kb on - strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.840 kb on + strand at 4394.850 kb on + strand at 4394.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,391,801 - -0.8 4,391,801 - HGI48_RS19670 0.19 -0.2 4,391,801 - +1.2 4,391,832 - HGI48_RS19670 0.22 -0.3 4,391,847 - HGI48_RS19670 0.23 -0.2 4,391,961 - +3.8 4,391,976 - HGI48_RS19670 0.36 -1.2 4,392,393 - HGI48_RS19670 0.75 +0.5 4,392,393 - HGI48_RS19670 0.75 -0.1 4,392,453 - HGI48_RS19670 0.81 +1.8 4,392,677 - -0.8 4,394,482 - -0.0 4,394,499 - +0.1 4,394,499 - -0.5 4,394,516 - +0.5 4,394,516 - +0.3 4,394,516 - -0.1 4,394,538 - -0.5 4,394,645 + -1.8 4,394,646 - -0.3 4,394,646 - -1.0 4,394,646 - -0.4 4,394,646 - +1.6 4,394,666 + +0.4 4,394,667 - -0.2 4,394,667 - -1.2 4,394,708 + -0.2 4,394,708 + -0.8 4,394,717 + +0.4 4,394,718 - +1.1 4,394,719 + -0.6 4,394,720 - +0.5 4,394,732 + +0.0 4,394,732 + +0.8 4,394,732 + -1.8 4,394,733 - -0.6 4,394,733 - -0.3 4,394,733 - +1.1 4,394,766 + +1.4 4,394,766 + -1.8 4,394,766 + +2.0 4,394,766 + +0.4 4,394,766 + -0.2 4,394,767 - +0.9 4,394,767 - -2.8 4,394,767 - +0.8 4,394,767 - -0.2 4,394,771 + +0.8 4,394,805 + -1.2 4,394,805 + -1.2 4,394,805 + +1.8 4,394,806 - +0.8 4,394,806 - +0.8 4,394,809 + +0.2 4,394,809 + +0.3 4,394,809 + -1.2 4,394,809 + +0.0 4,394,809 + -1.3 4,394,809 + +0.8 4,394,810 - +1.1 4,394,810 - -1.6 4,394,810 - -0.1 4,394,810 - +0.6 4,394,810 - +0.1 4,394,810 - +0.4 4,394,840 + +0.2 4,394,850 + +0.4 4,394,851 - -1.3
Or see this region's nucleotide sequence