Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19230 and HGI48_RS19235 are separated by 102 nucleotides HGI48_RS19235 and HGI48_RS19240 are separated by 60 nucleotides
HGI48_RS19230: HGI48_RS19230 - Trk system potassium transporter TrkA, at 4,318,495 to 4,319,871
_RS19230
HGI48_RS19235: HGI48_RS19235 - large-conductance mechanosensitive channel protein MscL, at 4,319,974 to 4,320,399
_RS19235
HGI48_RS19240: HGI48_RS19240 - IS481 family transposase, at 4,320,460 to 4,321,501
_RS19240
Position (kb) 4319
4320
4321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4318.976 kb on - strand at 4318.979 kb on - strand, within HGI48_RS19230 at 4319.005 kb on - strand, within HGI48_RS19230 at 4319.188 kb on + strand, within HGI48_RS19230 at 4319.200 kb on - strand, within HGI48_RS19230 at 4319.260 kb on - strand, within HGI48_RS19230 at 4319.270 kb on + strand, within HGI48_RS19230 at 4319.393 kb on + strand, within HGI48_RS19230 at 4319.393 kb on + strand, within HGI48_RS19230 at 4319.676 kb on - strand, within HGI48_RS19230 at 4319.678 kb on + strand, within HGI48_RS19230 at 4319.973 kb on + strand at 4319.974 kb on - strand at 4319.974 kb on - strand at 4319.974 kb on - strand at 4319.982 kb on + strand at 4319.984 kb on + strand at 4320.045 kb on + strand, within HGI48_RS19235 at 4320.072 kb on - strand at 4320.083 kb on + strand, within HGI48_RS19235 at 4320.083 kb on + strand at 4320.083 kb on + strand, within HGI48_RS19235 at 4320.084 kb on - strand, within HGI48_RS19235 at 4320.093 kb on + strand, within HGI48_RS19235 at 4320.093 kb on + strand, within HGI48_RS19235 at 4320.094 kb on - strand, within HGI48_RS19235 at 4320.094 kb on - strand, within HGI48_RS19235 at 4320.113 kb on + strand, within HGI48_RS19235 at 4320.113 kb on + strand, within HGI48_RS19235 at 4320.113 kb on + strand, within HGI48_RS19235 at 4320.114 kb on - strand, within HGI48_RS19235 at 4320.175 kb on - strand, within HGI48_RS19235 at 4320.175 kb on - strand, within HGI48_RS19235 at 4320.175 kb on - strand, within HGI48_RS19235 at 4320.176 kb on + strand, within HGI48_RS19235 at 4320.176 kb on + strand, within HGI48_RS19235 at 4320.177 kb on - strand, within HGI48_RS19235 at 4320.177 kb on - strand, within HGI48_RS19235 at 4320.192 kb on + strand at 4320.192 kb on + strand, within HGI48_RS19235 at 4320.192 kb on + strand, within HGI48_RS19235 at 4320.192 kb on + strand, within HGI48_RS19235 at 4320.193 kb on - strand, within HGI48_RS19235 at 4320.196 kb on + strand, within HGI48_RS19235 at 4320.196 kb on + strand at 4320.229 kb on - strand, within HGI48_RS19235 at 4320.274 kb on - strand, within HGI48_RS19235 at 4320.279 kb on - strand, within HGI48_RS19235 at 4320.360 kb on - strand at 4320.408 kb on - strand at 4320.431 kb on - strand at 4320.442 kb on - strand at 4320.444 kb on - strand at 4320.444 kb on - strand at 4320.444 kb on - strand at 4320.899 kb on + strand, within HGI48_RS19240
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,318,976 - +0.8 4,318,979 - HGI48_RS19230 0.35 -0.5 4,319,005 - HGI48_RS19230 0.37 -1.2 4,319,188 + HGI48_RS19230 0.50 +0.2 4,319,200 - HGI48_RS19230 0.51 -0.8 4,319,260 - HGI48_RS19230 0.56 -1.5 4,319,270 + HGI48_RS19230 0.56 -1.8 4,319,393 + HGI48_RS19230 0.65 -1.5 4,319,393 + HGI48_RS19230 0.65 -0.8 4,319,676 - HGI48_RS19230 0.86 -1.8 4,319,678 + HGI48_RS19230 0.86 -1.2 4,319,973 + +0.4 4,319,974 - -0.2 4,319,974 - -1.4 4,319,974 - +2.1 4,319,982 + -0.3 4,319,984 + +0.8 4,320,045 + HGI48_RS19235 0.17 -2.0 4,320,072 - +2.4 4,320,083 + HGI48_RS19235 0.26 -0.2 4,320,083 + +0.8 4,320,083 + HGI48_RS19235 0.26 +0.4 4,320,084 - HGI48_RS19235 0.26 -0.0 4,320,093 + HGI48_RS19235 0.28 -1.2 4,320,093 + HGI48_RS19235 0.28 +0.3 4,320,094 - HGI48_RS19235 0.28 +1.0 4,320,094 - HGI48_RS19235 0.28 -0.4 4,320,113 + HGI48_RS19235 0.33 -0.3 4,320,113 + HGI48_RS19235 0.33 -0.4 4,320,113 + HGI48_RS19235 0.33 -0.7 4,320,114 - HGI48_RS19235 0.33 -1.5 4,320,175 - HGI48_RS19235 0.47 -1.2 4,320,175 - HGI48_RS19235 0.47 -2.2 4,320,175 - HGI48_RS19235 0.47 -0.4 4,320,176 + HGI48_RS19235 0.47 +1.8 4,320,176 + HGI48_RS19235 0.47 -0.2 4,320,177 - HGI48_RS19235 0.48 +0.4 4,320,177 - HGI48_RS19235 0.48 -0.5 4,320,192 + +0.2 4,320,192 + HGI48_RS19235 0.51 +0.3 4,320,192 + HGI48_RS19235 0.51 -0.7 4,320,192 + HGI48_RS19235 0.51 -1.8 4,320,193 - HGI48_RS19235 0.51 +0.1 4,320,196 + HGI48_RS19235 0.52 +0.6 4,320,196 + +0.8 4,320,229 - HGI48_RS19235 0.60 -0.2 4,320,274 - HGI48_RS19235 0.70 -0.2 4,320,279 - HGI48_RS19235 0.72 -0.5 4,320,360 - -0.0 4,320,408 - -0.0 4,320,431 - -0.4 4,320,442 - +0.7 4,320,444 - -0.2 4,320,444 - -0.5 4,320,444 - +0.2 4,320,899 + HGI48_RS19240 0.42 +0.1
Or see this region's nucleotide sequence