Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19050 and HGI48_RS19055 are separated by 86 nucleotides HGI48_RS19055 and HGI48_RS19060 are separated by 470 nucleotides
HGI48_RS19050: HGI48_RS19050 - miniconductance mechanosensitive channel MscM, at 4,274,024 to 4,277,347
_RS19050
HGI48_RS19055: HGI48_RS19055 - elongation factor P--(R)-beta-lysine ligase, at 4,277,434 to 4,278,411
_RS19055
HGI48_RS19060: HGI48_RS19060 - fumarate reductase (quinol) flavoprotein subunit, at 4,278,882 to 4,280,678
_RS19060
Position (kb) 4277
4278
4279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4276.621 kb on + strand, within HGI48_RS19050 at 4276.622 kb on - strand, within HGI48_RS19050 at 4276.670 kb on + strand, within HGI48_RS19050 at 4276.671 kb on - strand, within HGI48_RS19050 at 4276.779 kb on + strand, within HGI48_RS19050 at 4276.891 kb on + strand, within HGI48_RS19050 at 4276.891 kb on + strand, within HGI48_RS19050 at 4276.892 kb on - strand, within HGI48_RS19050 at 4276.892 kb on - strand, within HGI48_RS19050 at 4276.895 kb on - strand, within HGI48_RS19050 at 4277.165 kb on - strand at 4277.191 kb on + strand at 4277.191 kb on + strand at 4277.191 kb on + strand at 4277.192 kb on - strand at 4277.192 kb on - strand at 4277.235 kb on - strand at 4277.278 kb on - strand at 4277.292 kb on + strand at 4277.293 kb on - strand at 4277.345 kb on + strand at 4277.346 kb on - strand at 4277.381 kb on - strand at 4277.381 kb on - strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.693 kb on + strand, within HGI48_RS19055 at 4277.696 kb on + strand at 4278.039 kb on - strand, within HGI48_RS19055 at 4278.048 kb on - strand, within HGI48_RS19055 at 4278.135 kb on - strand, within HGI48_RS19055 at 4278.447 kb on + strand at 4278.498 kb on - strand at 4278.513 kb on - strand at 4278.513 kb on - strand at 4278.518 kb on + strand at 4278.528 kb on + strand at 4278.529 kb on - strand at 4278.538 kb on - strand at 4278.538 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.589 kb on + strand at 4278.639 kb on - strand at 4278.639 kb on - strand at 4278.652 kb on + strand at 4278.757 kb on + strand at 4278.783 kb on + strand at 4278.857 kb on + strand at 4278.862 kb on + strand at 4278.866 kb on + strand at 4278.867 kb on - strand at 4278.867 kb on - strand at 4278.904 kb on + strand at 4278.904 kb on + strand at 4278.904 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.361 kb on + strand, within HGI48_RS19060 at 4279.362 kb on - strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.407 kb on - strand, within HGI48_RS19060 at 4279.407 kb on - strand at 4279.407 kb on - strand, within HGI48_RS19060 at 4279.407 kb on - strand at 4279.407 kb on - strand, within HGI48_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,276,621 + HGI48_RS19050 0.78 -1.0 4,276,622 - HGI48_RS19050 0.78 -0.4 4,276,670 + HGI48_RS19050 0.80 -0.8 4,276,671 - HGI48_RS19050 0.80 -1.3 4,276,779 + HGI48_RS19050 0.83 +0.8 4,276,891 + HGI48_RS19050 0.86 -1.8 4,276,891 + HGI48_RS19050 0.86 +0.4 4,276,892 - HGI48_RS19050 0.86 -0.4 4,276,892 - HGI48_RS19050 0.86 +0.5 4,276,895 - HGI48_RS19050 0.86 +0.5 4,277,165 - +2.0 4,277,191 + -0.1 4,277,191 + +0.7 4,277,191 + +1.8 4,277,192 - -0.2 4,277,192 - -0.8 4,277,235 - +0.4 4,277,278 - -0.1 4,277,292 + +2.0 4,277,293 - -0.8 4,277,345 + +1.5 4,277,346 - -1.2 4,277,381 - +0.1 4,277,381 - -0.2 4,277,413 + +0.3 4,277,413 + +0.3 4,277,413 + +1.7 4,277,413 + -1.2 4,277,413 + -0.2 4,277,413 + +0.1 4,277,413 + +0.4 4,277,693 + HGI48_RS19055 0.26 -1.0 4,277,696 + -0.2 4,278,039 - HGI48_RS19055 0.62 -0.8 4,278,048 - HGI48_RS19055 0.63 -1.5 4,278,135 - HGI48_RS19055 0.72 -0.8 4,278,447 + -0.2 4,278,498 - -0.0 4,278,513 - -0.2 4,278,513 - +0.4 4,278,518 + -0.8 4,278,528 + -0.2 4,278,529 - +0.3 4,278,538 - +0.2 4,278,538 - -2.3 4,278,543 - +0.5 4,278,543 - +0.3 4,278,543 - -1.4 4,278,543 - -0.5 4,278,589 + +0.1 4,278,639 - -1.5 4,278,639 - +2.4 4,278,652 + +0.0 4,278,757 + -1.2 4,278,783 + -0.8 4,278,857 + -0.3 4,278,862 + -0.9 4,278,866 + -2.2 4,278,867 - +0.1 4,278,867 - +0.5 4,278,904 + -0.9 4,278,904 + -1.4 4,278,904 + +0.2 4,279,126 + HGI48_RS19060 0.14 +0.1 4,279,126 + HGI48_RS19060 0.14 -1.4 4,279,126 + HGI48_RS19060 0.14 -0.1 4,279,126 + HGI48_RS19060 0.14 -0.2 4,279,126 + HGI48_RS19060 0.14 +0.0 4,279,126 + -0.8 4,279,126 + HGI48_RS19060 0.14 +1.1 4,279,126 + +0.2 4,279,126 + HGI48_RS19060 0.14 +0.2 4,279,126 + HGI48_RS19060 0.14 +1.1 4,279,126 + HGI48_RS19060 0.14 +0.8 4,279,126 + HGI48_RS19060 0.14 -0.1 4,279,127 - HGI48_RS19060 0.14 +1.4 4,279,127 - HGI48_RS19060 0.14 -2.5 4,279,127 - HGI48_RS19060 0.14 +0.1 4,279,127 - HGI48_RS19060 0.14 +1.4 4,279,127 - HGI48_RS19060 0.14 -0.6 4,279,127 - HGI48_RS19060 0.14 +0.5 4,279,127 - HGI48_RS19060 0.14 -0.4 4,279,127 - HGI48_RS19060 0.14 +0.0 4,279,127 - HGI48_RS19060 0.14 -0.0 4,279,127 - HGI48_RS19060 0.14 -0.5 4,279,127 - HGI48_RS19060 0.14 +1.3 4,279,127 - HGI48_RS19060 0.14 +0.1 4,279,129 + HGI48_RS19060 0.14 -0.0 4,279,129 + HGI48_RS19060 0.14 -0.4 4,279,129 + HGI48_RS19060 0.14 -0.1 4,279,130 - HGI48_RS19060 0.14 -0.9 4,279,130 - HGI48_RS19060 0.14 +0.5 4,279,130 - HGI48_RS19060 0.14 -2.0 4,279,361 + HGI48_RS19060 0.27 -0.3 4,279,362 - HGI48_RS19060 0.27 +0.2 4,279,406 + HGI48_RS19060 0.29 +0.4 4,279,406 + HGI48_RS19060 0.29 +0.3 4,279,406 + HGI48_RS19060 0.29 -0.7 4,279,406 + HGI48_RS19060 0.29 +0.1 4,279,406 + HGI48_RS19060 0.29 -0.3 4,279,407 - HGI48_RS19060 0.29 -1.5 4,279,407 - +0.2 4,279,407 - HGI48_RS19060 0.29 +0.8 4,279,407 - +0.2 4,279,407 - HGI48_RS19060 0.29 +1.8
Or see this region's nucleotide sequence