Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18850

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS18835 and HGI48_RS18840 are separated by 14 nucleotidesHGI48_RS18840 and HGI48_RS18845 overlap by 17 nucleotidesHGI48_RS18845 and HGI48_RS18850 are separated by 4 nucleotidesHGI48_RS18850 and HGI48_RS18855 are separated by 11 nucleotides HGI48_RS18835: HGI48_RS18835 - nitrogen fixation protein NifM, at 4,224,634 to 4,225,419 _RS18835 HGI48_RS18840: HGI48_RS18840 - nitrogen fixation protein NifZ, at 4,225,434 to 4,225,877 _RS18840 HGI48_RS18845: HGI48_RS18845 - nitrogen fixation protein NifW, at 4,225,861 to 4,226,130 _RS18845 HGI48_RS18850: HGI48_RS18850 - homocitrate synthase, at 4,226,135 to 4,227,283 _RS18850 HGI48_RS18855: HGI48_RS18855 - cysteine desulfurase NifS, at 4,227,295 to 4,228,557 _RS18855 Position (kb) 4226 4227 4228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4225.342 kb on + strandat 4225.342 kb on + strandat 4225.343 kb on - strandat 4225.343 kb on - strandat 4225.456 kb on + strandat 4225.456 kb on + strandat 4225.457 kb on - strandat 4225.457 kb on - strandat 4225.457 kb on - strandat 4225.505 kb on + strand, within HGI48_RS18840at 4225.605 kb on - strand, within HGI48_RS18840at 4225.605 kb on - strand, within HGI48_RS18840at 4225.622 kb on - strand, within HGI48_RS18840at 4225.717 kb on + strand, within HGI48_RS18840at 4225.717 kb on + strand, within HGI48_RS18840at 4225.718 kb on - strand, within HGI48_RS18840at 4225.718 kb on - strand, within HGI48_RS18840at 4225.721 kb on + strand, within HGI48_RS18840at 4225.721 kb on + strand, within HGI48_RS18840at 4225.721 kb on + strand, within HGI48_RS18840at 4225.722 kb on - strandat 4225.759 kb on + strand, within HGI48_RS18840at 4225.759 kb on + strand, within HGI48_RS18840at 4225.760 kb on - strandat 4225.760 kb on - strand, within HGI48_RS18840at 4225.760 kb on - strand, within HGI48_RS18840at 4225.760 kb on - strand, within HGI48_RS18840at 4225.760 kb on - strand, within HGI48_RS18840at 4225.904 kb on + strand, within HGI48_RS18845at 4225.905 kb on - strand, within HGI48_RS18845at 4226.051 kb on + strand, within HGI48_RS18845at 4226.052 kb on - strand, within HGI48_RS18845at 4226.117 kb on + strandat 4226.118 kb on - strandat 4226.184 kb on + strandat 4226.184 kb on + strandat 4226.184 kb on + strandat 4226.184 kb on + strandat 4226.184 kb on + strandat 4226.185 kb on - strandat 4226.185 kb on - strandat 4226.185 kb on - strandat 4226.388 kb on + strand, within HGI48_RS18850at 4226.389 kb on - strand, within HGI48_RS18850at 4226.389 kb on - strand, within HGI48_RS18850at 4226.389 kb on - strand, within HGI48_RS18850at 4226.389 kb on - strand, within HGI48_RS18850at 4226.389 kb on - strand, within HGI48_RS18850at 4226.424 kb on - strand, within HGI48_RS18850at 4226.471 kb on + strand, within HGI48_RS18850at 4226.471 kb on + strand, within HGI48_RS18850at 4226.472 kb on - strand, within HGI48_RS18850at 4226.472 kb on - strand, within HGI48_RS18850at 4226.472 kb on - strand, within HGI48_RS18850at 4226.472 kb on - strand, within HGI48_RS18850at 4226.472 kb on - strand, within HGI48_RS18850at 4227.007 kb on + strand, within HGI48_RS18850at 4227.007 kb on + strand, within HGI48_RS18850at 4227.007 kb on + strand, within HGI48_RS18850at 4227.007 kb on + strand, within HGI48_RS18850at 4227.008 kb on - strand, within HGI48_RS18850at 4227.008 kb on - strand, within HGI48_RS18850at 4227.008 kb on - strand, within HGI48_RS18850at 4227.008 kb on - strand, within HGI48_RS18850at 4227.008 kb on - strand, within HGI48_RS18850at 4227.008 kb on - strand, within HGI48_RS18850at 4227.011 kb on + strand, within HGI48_RS18850at 4227.011 kb on + strand, within HGI48_RS18850at 4227.011 kb on + strand, within HGI48_RS18850at 4227.302 kb on + strandat 4227.302 kb on + strandat 4227.302 kb on + strandat 4227.302 kb on + strandat 4227.302 kb on + strandat 4227.303 kb on - strandat 4227.303 kb on - strandat 4227.410 kb on + strandat 4227.410 kb on + strandat 4227.411 kb on - strandat 4227.411 kb on - strandat 4227.434 kb on + strand, within HGI48_RS18855at 4227.434 kb on + strand, within HGI48_RS18855at 4227.434 kb on + strand, within HGI48_RS18855at 4227.476 kb on + strand, within HGI48_RS18855at 4227.476 kb on + strand, within HGI48_RS18855at 4227.612 kb on + strand, within HGI48_RS18855at 4227.613 kb on - strand, within HGI48_RS18855at 4227.613 kb on - strand, within HGI48_RS18855at 4227.613 kb on - strand, within HGI48_RS18855at 4227.621 kb on + strand, within HGI48_RS18855at 4227.739 kb on + strand, within HGI48_RS18855at 4227.739 kb on + strand, within HGI48_RS18855at 4227.740 kb on - strand, within HGI48_RS18855at 4227.740 kb on - strand, within HGI48_RS18855at 4227.740 kb on - strand, within HGI48_RS18855at 4227.775 kb on + strand, within HGI48_RS18855at 4227.786 kb on + strand, within HGI48_RS18855at 4227.866 kb on + strand, within HGI48_RS18855at 4227.866 kb on + strand, within HGI48_RS18855at 4227.866 kb on + strand, within HGI48_RS18855at 4227.867 kb on - strand, within HGI48_RS18855at 4227.991 kb on + strand, within HGI48_RS18855at 4227.992 kb on - strand, within HGI48_RS18855at 4227.992 kb on - strand, within HGI48_RS18855at 4228.096 kb on + strand, within HGI48_RS18855at 4228.158 kb on + strand, within HGI48_RS18855at 4228.158 kb on + strand, within HGI48_RS18855at 4228.158 kb on + strandat 4228.159 kb on - strand, within HGI48_RS18855at 4228.159 kb on - strand, within HGI48_RS18855at 4228.159 kb on - strand, within HGI48_RS18855at 4228.160 kb on + strand, within HGI48_RS18855at 4228.160 kb on + strand, within HGI48_RS18855at 4228.161 kb on - strand, within HGI48_RS18855at 4228.161 kb on - strand, within HGI48_RS18855at 4228.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,225,342 + +0.0
4,225,342 + -0.2
4,225,343 - -1.7
4,225,343 - -0.2
4,225,456 + -1.2
4,225,456 + +1.8
4,225,457 - -0.2
4,225,457 - -0.0
4,225,457 - +2.0
4,225,505 + HGI48_RS18840 0.16 +0.5
4,225,605 - HGI48_RS18840 0.39 +0.7
4,225,605 - HGI48_RS18840 0.39 -0.2
4,225,622 - HGI48_RS18840 0.42 +0.0
4,225,717 + HGI48_RS18840 0.64 -0.2
4,225,717 + HGI48_RS18840 0.64 +1.0
4,225,718 - HGI48_RS18840 0.64 -0.2
4,225,718 - HGI48_RS18840 0.64 +1.0
4,225,721 + HGI48_RS18840 0.65 -1.5
4,225,721 + HGI48_RS18840 0.65 +0.8
4,225,721 + HGI48_RS18840 0.65 -0.1
4,225,722 - +1.5
4,225,759 + HGI48_RS18840 0.73 -0.3
4,225,759 + HGI48_RS18840 0.73 -1.8
4,225,760 - +0.2
4,225,760 - HGI48_RS18840 0.73 +1.6
4,225,760 - HGI48_RS18840 0.73 +0.8
4,225,760 - HGI48_RS18840 0.73 +1.9
4,225,760 - HGI48_RS18840 0.73 -0.6
4,225,904 + HGI48_RS18845 0.16 -0.5
4,225,905 - HGI48_RS18845 0.16 -0.2
4,226,051 + HGI48_RS18845 0.70 +0.1
4,226,052 - HGI48_RS18845 0.71 +0.8
4,226,117 + -0.8
4,226,118 - +1.1
4,226,184 + +0.1
4,226,184 + +0.3
4,226,184 + +1.0
4,226,184 + +0.2
4,226,184 + +0.8
4,226,185 - -0.2
4,226,185 - -1.4
4,226,185 - -0.2
4,226,388 + HGI48_RS18850 0.22 +0.3
4,226,389 - HGI48_RS18850 0.22 +0.1
4,226,389 - HGI48_RS18850 0.22 -0.6
4,226,389 - HGI48_RS18850 0.22 -1.8
4,226,389 - HGI48_RS18850 0.22 -1.2
4,226,389 - HGI48_RS18850 0.22 +0.3
4,226,424 - HGI48_RS18850 0.25 +0.1
4,226,471 + HGI48_RS18850 0.29 +0.3
4,226,471 + HGI48_RS18850 0.29 +0.4
4,226,472 - HGI48_RS18850 0.29 -0.0
4,226,472 - HGI48_RS18850 0.29 +0.4
4,226,472 - HGI48_RS18850 0.29 +0.8
4,226,472 - HGI48_RS18850 0.29 -1.6
4,226,472 - HGI48_RS18850 0.29 +0.1
4,227,007 + HGI48_RS18850 0.76 -0.6
4,227,007 + HGI48_RS18850 0.76 +0.8
4,227,007 + HGI48_RS18850 0.76 +0.5
4,227,007 + HGI48_RS18850 0.76 -0.5
4,227,008 - HGI48_RS18850 0.76 -0.6
4,227,008 - HGI48_RS18850 0.76 -0.0
4,227,008 - HGI48_RS18850 0.76 -0.9
4,227,008 - HGI48_RS18850 0.76 -0.6
4,227,008 - HGI48_RS18850 0.76 -1.2
4,227,008 - HGI48_RS18850 0.76 -2.8
4,227,011 + HGI48_RS18850 0.76 -0.2
4,227,011 + HGI48_RS18850 0.76 +0.3
4,227,011 + HGI48_RS18850 0.76 -0.6
4,227,302 + +1.2
4,227,302 + -0.3
4,227,302 + -0.2
4,227,302 + +0.2
4,227,302 + -0.8
4,227,303 - -0.2
4,227,303 - -1.6
4,227,410 + +0.4
4,227,410 + -0.2
4,227,411 - -1.8
4,227,411 - -2.6
4,227,434 + HGI48_RS18855 0.11 -0.9
4,227,434 + HGI48_RS18855 0.11 +1.6
4,227,434 + HGI48_RS18855 0.11 -0.7
4,227,476 + HGI48_RS18855 0.14 +0.5
4,227,476 + HGI48_RS18855 0.14 -0.2
4,227,612 + HGI48_RS18855 0.25 -0.2
4,227,613 - HGI48_RS18855 0.25 -0.7
4,227,613 - HGI48_RS18855 0.25 -0.6
4,227,613 - HGI48_RS18855 0.25 -0.0
4,227,621 + HGI48_RS18855 0.26 -1.2
4,227,739 + HGI48_RS18855 0.35 -1.4
4,227,739 + HGI48_RS18855 0.35 +1.1
4,227,740 - HGI48_RS18855 0.35 -0.2
4,227,740 - HGI48_RS18855 0.35 -0.1
4,227,740 - HGI48_RS18855 0.35 -0.1
4,227,775 + HGI48_RS18855 0.38 +1.6
4,227,786 + HGI48_RS18855 0.39 -0.0
4,227,866 + HGI48_RS18855 0.45 +0.4
4,227,866 + HGI48_RS18855 0.45 -0.1
4,227,866 + HGI48_RS18855 0.45 +1.1
4,227,867 - HGI48_RS18855 0.45 -1.2
4,227,991 + HGI48_RS18855 0.55 -0.2
4,227,992 - HGI48_RS18855 0.55 -0.6
4,227,992 - HGI48_RS18855 0.55 -0.8
4,228,096 + HGI48_RS18855 0.63 -0.2
4,228,158 + HGI48_RS18855 0.68 +0.3
4,228,158 + HGI48_RS18855 0.68 +0.3
4,228,158 + +2.3
4,228,159 - HGI48_RS18855 0.68 +0.3
4,228,159 - HGI48_RS18855 0.68 +0.1
4,228,159 - HGI48_RS18855 0.68 +1.1
4,228,160 + HGI48_RS18855 0.68 -2.0
4,228,160 + HGI48_RS18855 0.68 -1.0
4,228,161 - HGI48_RS18855 0.69 -1.6
4,228,161 - HGI48_RS18855 0.69 -0.1
4,228,161 - -0.2

Or see this region's nucleotide sequence