Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18185 and HGI48_RS18190 are separated by 112 nucleotides HGI48_RS18190 and HGI48_RS18195 overlap by 1 nucleotides HGI48_RS18195 and HGI48_RS18200 overlap by 8 nucleotides
HGI48_RS18185: HGI48_RS18185 - LPS assembly protein LptD, at 4,080,010 to 4,082,421
_RS18185
HGI48_RS18190: HGI48_RS18190 - peptidylprolyl isomerase SurA, at 4,082,534 to 4,083,826
_RS18190
HGI48_RS18195: HGI48_RS18195 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,083,826 to 4,084,827
_RS18195
HGI48_RS18200: HGI48_RS18200 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,084,820 to 4,085,638
_RS18200
Position (kb)
4082
4083
4084 Strain fitness (log2 ratio)
-1
0
1
2 at 4082.359 kb on + strand at 4082.431 kb on - strand at 4082.436 kb on + strand at 4082.436 kb on + strand at 4082.436 kb on + strand at 4082.441 kb on + strand at 4082.441 kb on + strand at 4082.441 kb on + strand at 4082.441 kb on + strand at 4082.441 kb on + strand at 4082.441 kb on + strand at 4082.442 kb on - strand at 4082.442 kb on - strand at 4082.442 kb on - strand at 4082.465 kb on + strand at 4082.473 kb on + strand at 4084.120 kb on + strand, within HGI48_RS18195 at 4084.121 kb on - strand, within HGI48_RS18195 at 4084.209 kb on + strand, within HGI48_RS18195 at 4084.224 kb on + strand, within HGI48_RS18195 at 4084.444 kb on + strand, within HGI48_RS18195 at 4084.444 kb on + strand, within HGI48_RS18195 at 4084.444 kb on + strand, within HGI48_RS18195 at 4084.444 kb on + strand, within HGI48_RS18195 at 4084.627 kb on + strand at 4084.627 kb on + strand at 4084.657 kb on + strand, within HGI48_RS18195 at 4084.657 kb on + strand, within HGI48_RS18195
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,082,359 + -0.7 4,082,431 - -0.9 4,082,436 + -0.5 4,082,436 + -1.6 4,082,436 + +1.6 4,082,441 + +0.4 4,082,441 + -1.1 4,082,441 + +1.9 4,082,441 + +0.4 4,082,441 + -0.1 4,082,441 + -0.3 4,082,442 - -0.2 4,082,442 - +0.7 4,082,442 - -1.3 4,082,465 + -0.0 4,082,473 + +0.5 4,084,120 + HGI48_RS18195 0.29 -0.5 4,084,121 - HGI48_RS18195 0.29 +0.4 4,084,209 + HGI48_RS18195 0.38 +0.6 4,084,224 + HGI48_RS18195 0.40 -0.3 4,084,444 + HGI48_RS18195 0.62 -1.3 4,084,444 + HGI48_RS18195 0.62 +0.7 4,084,444 + HGI48_RS18195 0.62 -0.5 4,084,444 + HGI48_RS18195 0.62 +0.1 4,084,627 + +0.1 4,084,627 + -0.3 4,084,657 + HGI48_RS18195 0.83 +0.2 4,084,657 + HGI48_RS18195 0.83 +1.0
Or see this region's nucleotide sequence