Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16640

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,726,681	+		HGI48_RS16630	0.19	-0.4
3,726,681	+		HGI48_RS16630	0.19	-1.1
3,726,689	+				+0.0
3,726,690	-				+0.0
3,726,728	-		HGI48_RS16630	0.29	-2.4
3,726,728	-		HGI48_RS16630	0.29	+0.4
3,726,744	+		HGI48_RS16630	0.32	-0.8
3,726,744	+		HGI48_RS16630	0.32	-1.6
3,726,744	+		HGI48_RS16630	0.32	+0.2
3,726,757	+		HGI48_RS16630	0.35	+0.3
3,726,794	+		HGI48_RS16630	0.43	+1.9
3,726,794	+		HGI48_RS16630	0.43	+1.9
3,726,795	-		HGI48_RS16630	0.43	-0.2
3,726,804	+		HGI48_RS16630	0.45	+1.4
3,726,804	+		HGI48_RS16630	0.45	-1.8
3,726,804	+		HGI48_RS16630	0.45	+0.9
3,726,805	-		HGI48_RS16630	0.46	+0.3
3,726,805	-		HGI48_RS16630	0.46	-1.6
3,726,805	-		HGI48_RS16630	0.46	-0.4
3,726,867	+		HGI48_RS16630	0.59	-0.6
3,726,867	+		HGI48_RS16630	0.59	-0.4
3,726,877	+		HGI48_RS16630	0.61	+0.4
3,726,877	+		HGI48_RS16630	0.61	+0.9
3,726,877	+		HGI48_RS16630	0.61	+0.0
3,726,877	+		HGI48_RS16630	0.61	+0.8
3,726,877	+		HGI48_RS16630	0.61	+0.1
3,726,877	+		HGI48_RS16630	0.61	-0.7
3,726,877	+		HGI48_RS16630	0.61	+0.3
3,726,877	+		HGI48_RS16630	0.61	+0.6
3,726,877	+				+0.6
3,726,877	+		HGI48_RS16630	0.61	+1.0
3,726,877	+		HGI48_RS16630	0.61	+0.1
3,726,878	-		HGI48_RS16630	0.61	+1.4
3,726,878	-				+1.3
3,726,878	-		HGI48_RS16630	0.61	-0.4
3,726,881	+		HGI48_RS16630	0.62	-2.4
3,726,881	+		HGI48_RS16630	0.62	-1.2
3,726,881	+		HGI48_RS16630	0.62	-0.1
3,726,881	+		HGI48_RS16630	0.62	-0.2
3,726,881	+		HGI48_RS16630	0.62	-0.4
3,726,881	+		HGI48_RS16630	0.62	+0.4
3,726,881	+		HGI48_RS16630	0.62	+0.6
3,726,882	-		HGI48_RS16630	0.62	+0.4
3,726,882	-				+1.2
3,726,882	-		HGI48_RS16630	0.62	+0.4
3,726,882	-		HGI48_RS16630	0.62	+0.7
3,726,882	-		HGI48_RS16630	0.62	+0.1
3,726,882	-				-1.0
3,726,882	-		HGI48_RS16630	0.62	+1.6
3,726,882	-		HGI48_RS16630	0.62	+0.6
3,726,882	-		HGI48_RS16630	0.62	-0.1
3,726,882	-		HGI48_RS16630	0.62	-0.4
3,726,882	-		HGI48_RS16630	0.62	-1.2
3,726,882	-		HGI48_RS16630	0.62	+0.2
3,726,886	+		HGI48_RS16630	0.63	+0.1
3,726,886	+		HGI48_RS16630	0.63	-0.7
3,726,887	-		HGI48_RS16630	0.63	-0.8
3,726,890	+		HGI48_RS16630	0.64	-2.2
3,726,890	+		HGI48_RS16630	0.64	-0.9
3,726,890	+		HGI48_RS16630	0.64	+0.5
3,726,890	+		HGI48_RS16630	0.64	-2.9
3,726,890	+		HGI48_RS16630	0.64	-1.2
3,726,891	-		HGI48_RS16630	0.64	-0.1
3,726,891	-		HGI48_RS16630	0.64	-0.2
3,726,891	-		HGI48_RS16630	0.64	-0.4
3,726,891	-		HGI48_RS16630	0.64	+0.3
3,726,891	-		HGI48_RS16630	0.64	+0.6
3,727,024	+				-0.8
3,727,024	+				-1.4
3,727,024	+				+0.1
3,727,041	+				+0.3
3,727,042	-				-0.5
3,727,042	-				-1.4
3,727,054	+				+1.2
3,727,055	-				+1.2
3,727,061	+				-0.8
3,727,062	-				-1.0
3,727,062	-				+0.6
3,727,088	-				-0.6
3,727,110	+				+0.6
3,727,110	+				-1.6
3,727,111	-				-1.4
3,727,111	-				-0.3
3,727,126	+				+0.6
3,727,128	+				-1.4
3,727,128	+				+0.3
3,727,128	+				+0.3
3,727,128	+				-2.0
3,727,128	+				+0.6
3,727,129	-				+2.4
3,727,129	-				+3.2
3,727,129	-				-2.6
3,727,129	-				-1.4
3,727,129	-				+0.0
3,727,129	-				-0.1
3,727,129	-				-0.4
3,727,129	-				-0.1
3,727,132	+				+0.3
3,727,132	+				-1.7
3,727,154	+				-0.1
3,727,158	+				-1.5
3,727,158	+				-0.7
3,727,159	-				+0.5
3,727,190	-				+0.9
3,727,193	+				-2.6
3,727,197	+				-1.7
3,727,213	-				-0.5
3,727,222	-				-1.4
3,727,240	+				-0.2
3,727,241	-				+0.1
3,727,242	+				-0.1
3,727,242	+				-1.1
3,727,242	+				+0.5
3,727,243	-				+0.4
3,727,243	-				+0.4
3,727,243	-				+0.9
3,727,263	+				-0.5
3,727,360	+		HGI48_RS16635	0.25	-0.4
3,727,399	+		HGI48_RS16635	0.39	+0.2
3,727,400	-		HGI48_RS16635	0.39	+1.4
3,727,400	-		HGI48_RS16635	0.39	+1.1
3,727,451	-		HGI48_RS16635	0.57	-1.7
3,727,451	-				+0.6
3,727,453	-		HGI48_RS16635	0.58	-1.6
3,727,453	-		HGI48_RS16635	0.58	+0.2
3,727,481	-		HGI48_RS16635	0.67	-0.4
3,727,486	+		HGI48_RS16635	0.69	+0.3
3,727,486	+		HGI48_RS16635	0.69	+0.6
3,727,486	+		HGI48_RS16635	0.69	+0.0
3,727,486	+		HGI48_RS16635	0.69	+0.2
3,727,486	+				+0.0
3,727,487	-		HGI48_RS16635	0.69	+0.3
3,727,530	+				+1.6
3,727,530	+		HGI48_RS16635	0.84	+0.0
3,727,531	-		HGI48_RS16635	0.85	-0.2
3,727,531	-				+0.6
3,727,615	+				-0.4
3,727,616	-				-2.7
3,727,616	-				+0.4
3,727,616	-				-1.7
3,727,628	+				-0.9
3,727,628	+				-0.4
3,727,629	-				+0.4
3,727,632	+				+0.9
3,727,632	+				+1.6
3,727,632	+				-1.0
3,727,632	+				-1.1
3,727,633	-				-0.3
3,727,633	-				-0.1
3,727,633	-				+1.2
3,727,633	-				-0.4
3,727,696	+				-0.2
3,727,696	+				-0.1
3,727,696	+				-0.4
3,727,696	+				+0.2
3,727,712	+				-1.7
3,727,713	-				-0.3
3,727,736	+				-2.4
3,727,736	+				-0.4
3,727,736	+				+0.1
3,727,737	-				-2.0
3,727,771	+				-1.0
3,727,771	+				-0.7
3,727,772	-				-1.4
3,727,772	-				+0.1
3,727,896	+				+0.0
3,727,897	-		HGI48_RS16640	0.18	+2.2
3,727,897	-		HGI48_RS16640	0.18	+0.1
3,727,928	+		HGI48_RS16640	0.20	+0.9
3,727,928	+		HGI48_RS16640	0.20	+1.0
3,727,928	+		HGI48_RS16640	0.20	+0.1
3,727,928	+		HGI48_RS16640	0.20	-1.2
3,727,929	-		HGI48_RS16640	0.20	-1.0
3,727,929	-		HGI48_RS16640	0.20	-0.9
3,727,929	-		HGI48_RS16640	0.20	+0.1
3,727,929	-		HGI48_RS16640	0.20	+0.2
3,727,929	-		HGI48_RS16640	0.20	+1.9
3,727,929	-		HGI48_RS16640	0.20	+0.6
3,727,929	-		HGI48_RS16640	0.20	+0.1
3,727,929	-		HGI48_RS16640	0.20	+0.6
3,728,480	+		HGI48_RS16640	0.58	-0.4
3,728,480	+		HGI48_RS16640	0.58	+0.2
3,728,481	-		HGI48_RS16640	0.58	-2.0
3,728,481	-		HGI48_RS16640	0.58	-0.1
3,728,481	-		HGI48_RS16640	0.58	-0.5
3,728,626	-		HGI48_RS16640	0.68	-0.1
3,728,655	+		HGI48_RS16640	0.70	+2.4
3,728,753	+		HGI48_RS16640	0.77	-2.4
3,728,754	-		HGI48_RS16640	0.77	-2.0
3,728,754	-		HGI48_RS16640	0.77	-0.1
3,728,754	-		HGI48_RS16640	0.77	-0.6
3,728,754	-		HGI48_RS16640	0.77	-0.5
3,728,754	-		HGI48_RS16640	0.77	-0.9
3,728,913	+		HGI48_RS16640	0.88	-0.2
3,728,913	+		HGI48_RS16640	0.88	-2.6
3,728,913	+		HGI48_RS16640	0.88	-0.8
3,728,913	+		HGI48_RS16640	0.88	+1.2
3,728,913	+		HGI48_RS16640	0.88	-0.2
3,728,968	+				+0.2
3,728,968	+				+0.4
3,728,969	-				+1.6
3,729,178	-				-0.4
3,729,178	-				+0.2
3,729,178	-				+0.6
3,729,357	+		HGI48_RS16645	0.18	+0.9
3,729,358	-		HGI48_RS16645	0.19	+0.2
3,729,421	+		HGI48_RS16645	0.24	-0.4
3,729,421	+		HGI48_RS16645	0.24	-0.1
3,729,421	+		HGI48_RS16645	0.24	+0.3
3,729,421	+		HGI48_RS16645	0.24	-1.4
3,729,421	+		HGI48_RS16645	0.24	-0.5
3,729,421	+		HGI48_RS16645	0.24	+0.9
3,729,422	-		HGI48_RS16645	0.25	-1.0
3,729,422	-				-0.4
3,729,422	-		HGI48_RS16645	0.25	-0.3
3,729,422	-		HGI48_RS16645	0.25	-2.7
3,729,422	-		HGI48_RS16645	0.25	-1.0
3,729,422	-		HGI48_RS16645	0.25	-0.4
3,729,422	-				+1.0
3,729,464	+		HGI48_RS16645	0.29	-2.7
3,729,500	+		HGI48_RS16645	0.32	+0.2
3,729,736	+		HGI48_RS16645	0.54	-1.0
3,729,736	+		HGI48_RS16645	0.54	+0.6
3,729,736	+				+1.3
3,729,736	+		HGI48_RS16645	0.54	-1.5
3,729,736	+		HGI48_RS16645	0.54	-0.3
3,729,736	+		HGI48_RS16645	0.54	-1.3
3,729,737	-		HGI48_RS16645	0.54	-1.7
3,729,737	-		HGI48_RS16645	0.54	+0.2
3,729,737	-		HGI48_RS16645	0.54	-0.6
3,729,737	-		HGI48_RS16645	0.54	+0.6
3,729,737	-				+1.0
3,729,737	-		HGI48_RS16645	0.54	-0.7
3,729,904	+		HGI48_RS16645	0.70	+0.1
3,729,970	+		HGI48_RS16645	0.76	+0.1
3,729,985	+		HGI48_RS16645	0.78	-0.1
3,729,985	+		HGI48_RS16645	0.78	-0.1
3,729,985	+		HGI48_RS16645	0.78	-1.7
3,729,985	+		HGI48_RS16645	0.78	-0.1
3,729,985	+		HGI48_RS16645	0.78	+0.6
3,729,986	-		HGI48_RS16645	0.78	-0.4
3,729,986	-		HGI48_RS16645	0.78	-0.1
3,729,986	-		HGI48_RS16645	0.78	-0.2
3,729,986	-		HGI48_RS16645	0.78	-0.9
3,729,986	-				+1.0
3,729,986	-		HGI48_RS16645	0.78	-0.5
3,730,062	+		HGI48_RS16645	0.85	+0.9
3,730,063	-		HGI48_RS16645	0.85	+0.4