Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS15555 and HGI48_RS15560 are separated by 140 nucleotides HGI48_RS15560 and HGI48_RS15565 are separated by 10 nucleotides HGI48_RS15565 and HGI48_RS15570 are separated by 13 nucleotides
HGI48_RS15555: HGI48_RS15555 - ribosome biogenesis GTPase Der, at 3,497,212 to 3,498,699
_RS15555
HGI48_RS15560: HGI48_RS15560 - outer membrane protein assembly factor BamB, at 3,498,840 to 3,500,021
_RS15560
HGI48_RS15565: HGI48_RS15565 - YfgM family protein, at 3,500,032 to 3,500,652
_RS15565
HGI48_RS15570: HGI48_RS15570 - histidine--tRNA ligase, at 3,500,666 to 3,501,940
_RS15570
Position (kb)
3498
3499
3500
3501 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3498.758 kb on - strand at 3499.022 kb on - strand, within HGI48_RS15560 at 3499.022 kb on - strand, within HGI48_RS15560 at 3499.078 kb on - strand, within HGI48_RS15560 at 3499.134 kb on - strand, within HGI48_RS15560 at 3499.230 kb on - strand at 3499.230 kb on - strand, within HGI48_RS15560 at 3499.244 kb on - strand at 3499.244 kb on - strand, within HGI48_RS15560 at 3499.844 kb on - strand, within HGI48_RS15560 at 3500.111 kb on + strand, within HGI48_RS15565 at 3500.112 kb on - strand, within HGI48_RS15565 at 3500.112 kb on - strand, within HGI48_RS15565 at 3500.252 kb on - strand, within HGI48_RS15565 at 3500.509 kb on - strand, within HGI48_RS15565 at 3500.643 kb on - strand at 3500.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,498,758 - +0.6 3,499,022 - HGI48_RS15560 0.15 -2.0 3,499,022 - HGI48_RS15560 0.15 -1.8 3,499,078 - HGI48_RS15560 0.20 +0.2 3,499,134 - HGI48_RS15560 0.25 -1.3 3,499,230 - +0.5 3,499,230 - HGI48_RS15560 0.33 -1.8 3,499,244 - +1.1 3,499,244 - HGI48_RS15560 0.34 -1.0 3,499,844 - HGI48_RS15560 0.85 +0.0 3,500,111 + HGI48_RS15565 0.13 +1.5 3,500,112 - HGI48_RS15565 0.13 -0.9 3,500,112 - HGI48_RS15565 0.13 -0.3 3,500,252 - HGI48_RS15565 0.35 -2.3 3,500,509 - HGI48_RS15565 0.77 -1.5 3,500,643 - +1.9 3,500,643 - -0.2
Or see this region's nucleotide sequence