Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS14270 and HGI48_RS14275 are separated by 10 nucleotides HGI48_RS14275 and HGI48_RS14280 are separated by 16 nucleotides HGI48_RS14280 and HGI48_RS14285 overlap by 4 nucleotides
HGI48_RS14270: HGI48_RS14270 - NADH-quinone oxidoreductase subunit J, at 3,204,576 to 3,205,127
_RS14270
HGI48_RS14275: HGI48_RS14275 - NADH-quinone oxidoreductase subunit NuoI, at 3,205,138 to 3,205,680
_RS14275
HGI48_RS14280: HGI48_RS14280 - NADH-quinone oxidoreductase subunit NuoH, at 3,205,697 to 3,206,671
_RS14280
HGI48_RS14285: HGI48_RS14285 - NADH-quinone oxidoreductase subunit NuoG, at 3,206,668 to 3,209,394
_RS14285
Position (kb)
3205
3206
3207 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3204.718 kb on + strand, within HGI48_RS14270 at 3204.719 kb on - strand, within HGI48_RS14270 at 3205.042 kb on - strand, within HGI48_RS14270 at 3205.686 kb on - strand at 3205.686 kb on - strand at 3205.947 kb on + strand, within HGI48_RS14280 at 3205.948 kb on - strand, within HGI48_RS14280 at 3206.119 kb on + strand, within HGI48_RS14280 at 3206.120 kb on - strand, within HGI48_RS14280 at 3206.399 kb on - strand, within HGI48_RS14280 at 3206.948 kb on + strand, within HGI48_RS14285 at 3207.269 kb on + strand, within HGI48_RS14285 at 3207.419 kb on + strand, within HGI48_RS14285
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,204,718 + HGI48_RS14270 0.26 -1.0 3,204,719 - HGI48_RS14270 0.26 -2.1 3,205,042 - HGI48_RS14270 0.84 -0.5 3,205,686 - +2.0 3,205,686 - +0.4 3,205,947 + HGI48_RS14280 0.26 -1.9 3,205,948 - HGI48_RS14280 0.26 -1.7 3,206,119 + HGI48_RS14280 0.43 -1.6 3,206,120 - HGI48_RS14280 0.43 +0.3 3,206,399 - HGI48_RS14280 0.72 +0.0 3,206,948 + HGI48_RS14285 0.10 -1.6 3,207,269 + HGI48_RS14285 0.22 -0.7 3,207,419 + HGI48_RS14285 0.28 +0.9
Or see this region's nucleotide sequence