Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14030

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,138,329	+		HGI48_RS14025	0.45	-0.1
3,138,346	+		HGI48_RS14025	0.46	+0.3
3,138,347	-		HGI48_RS14025	0.46	+0.2
3,138,347	-		HGI48_RS14025	0.46	-0.9
3,138,400	+		HGI48_RS14025	0.49	-0.3
3,138,485	+		HGI48_RS14025	0.54	+0.4
3,138,486	-		HGI48_RS14025	0.54	-0.3
3,138,486	-		HGI48_RS14025	0.54	-0.6
3,138,486	-		HGI48_RS14025	0.54	-0.3
3,138,486	-		HGI48_RS14025	0.54	+0.7
3,138,499	+		HGI48_RS14025	0.55	+0.1
3,138,499	+		HGI48_RS14025	0.55	+0.4
3,138,499	+		HGI48_RS14025	0.55	-1.3
3,138,499	+		HGI48_RS14025	0.55	-1.9
3,138,499	+		HGI48_RS14025	0.55	+1.1
3,138,499	+		HGI48_RS14025	0.55	+0.0
3,138,499	+		HGI48_RS14025	0.55	-1.3
3,138,499	+		HGI48_RS14025	0.55	+0.9
3,138,499	+		HGI48_RS14025	0.55	-1.8
3,138,500	-		HGI48_RS14025	0.55	-0.4
3,138,500	-		HGI48_RS14025	0.55	+0.2
3,138,500	-		HGI48_RS14025	0.55	-1.9
3,138,500	-		HGI48_RS14025	0.55	-0.5
3,138,503	+		HGI48_RS14025	0.55	+0.4
3,138,504	-		HGI48_RS14025	0.55	-0.9
3,138,504	-		HGI48_RS14025	0.55	-0.4
3,138,504	-				+1.6
3,138,560	+		HGI48_RS14025	0.58	-0.1
3,138,561	-		HGI48_RS14025	0.58	-1.0
3,138,561	-		HGI48_RS14025	0.58	-0.2
3,138,662	+		HGI48_RS14025	0.64	-0.3
3,138,662	+		HGI48_RS14025	0.64	-0.3
3,138,663	-				+1.2
3,138,663	-		HGI48_RS14025	0.64	-0.1
3,138,667	+		HGI48_RS14025	0.64	+0.2
3,138,667	+		HGI48_RS14025	0.64	-0.2
3,138,668	-		HGI48_RS14025	0.64	-0.6
3,138,701	-		HGI48_RS14025	0.66	+0.1
3,138,701	-		HGI48_RS14025	0.66	+0.4
3,138,701	-		HGI48_RS14025	0.66	-0.6
3,138,704	+		HGI48_RS14025	0.66	-0.9
3,138,704	+		HGI48_RS14025	0.66	-0.2
3,138,704	+		HGI48_RS14025	0.66	-0.0
3,138,704	+		HGI48_RS14025	0.66	+1.0
3,138,704	+				-0.2
3,138,704	+		HGI48_RS14025	0.66	-0.6
3,138,704	+		HGI48_RS14025	0.66	-0.5
3,138,705	-		HGI48_RS14025	0.67	+0.4
3,138,705	-		HGI48_RS14025	0.67	-0.5
3,138,705	-		HGI48_RS14025	0.67	-1.2
3,138,705	-		HGI48_RS14025	0.67	-0.4
3,138,973	+		HGI48_RS14025	0.82	+1.0
3,138,974	-		HGI48_RS14025	0.82	-2.8
3,139,052	+		HGI48_RS14025	0.86	+0.1
3,139,052	+		HGI48_RS14025	0.86	-0.1
3,139,052	+		HGI48_RS14025	0.86	+0.3
3,139,052	+		HGI48_RS14025	0.86	-1.2
3,139,053	-		HGI48_RS14025	0.86	-1.1
3,139,053	-				+2.6
3,139,053	-		HGI48_RS14025	0.86	+0.1
3,139,055	+		HGI48_RS14025	0.86	-0.9
3,139,055	+		HGI48_RS14025	0.86	-0.4
3,139,055	+				-1.2
3,139,055	+		HGI48_RS14025	0.86	-2.2
3,139,056	-		HGI48_RS14025	0.86	+0.2
3,139,110	-		HGI48_RS14025	0.90	+0.4
3,139,110	-		HGI48_RS14025	0.90	-1.2
3,139,110	-		HGI48_RS14025	0.90	-1.3
3,139,111	+		HGI48_RS14025	0.90	-1.6
3,139,111	+		HGI48_RS14025	0.90	+0.0
3,139,111	+				-0.6
3,139,112	-		HGI48_RS14025	0.90	-0.8
3,139,112	-		HGI48_RS14025	0.90	-0.7
3,139,239	-				+3.2
3,139,239	-				-2.3
3,139,295	+				-0.2
3,139,296	-				-0.2
3,139,405	-				-0.6
3,139,566	+		HGI48_RS14030	0.17	+0.7
3,139,566	+		HGI48_RS14030	0.17	+0.4
3,139,567	-				+1.7
3,139,569	+		HGI48_RS14030	0.18	-2.4
3,139,569	+		HGI48_RS14030	0.18	+1.4
3,139,569	+		HGI48_RS14030	0.18	-0.8
3,139,569	+		HGI48_RS14030	0.18	-0.7
3,139,569	+		HGI48_RS14030	0.18	-0.3
3,139,569	+		HGI48_RS14030	0.18	-0.9
3,139,570	-		HGI48_RS14030	0.18	+0.2
3,139,570	-		HGI48_RS14030	0.18	-0.8
3,139,782	+		HGI48_RS14030	0.31	-0.9
3,139,783	-		HGI48_RS14030	0.31	-1.4
3,139,800	+		HGI48_RS14030	0.32	+1.2
3,139,830	+		HGI48_RS14030	0.34	-1.3
3,140,165	-		HGI48_RS14030	0.55	+0.2
3,140,190	+		HGI48_RS14030	0.56	+0.4
3,140,190	+		HGI48_RS14030	0.56	+0.9
3,140,190	+		HGI48_RS14030	0.56	-0.3
3,140,190	+		HGI48_RS14030	0.56	-1.2
3,140,191	-				+0.4
3,140,191	-		HGI48_RS14030	0.56	-1.1
3,140,195	+		HGI48_RS14030	0.57	-0.0
3,140,195	+		HGI48_RS14030	0.57	-0.3
3,140,195	+		HGI48_RS14030	0.57	+0.4
3,140,196	-				+1.4
3,140,259	+		HGI48_RS14030	0.61	-0.2
3,140,259	+		HGI48_RS14030	0.61	-0.1
3,140,259	+				-0.2
3,140,260	-		HGI48_RS14030	0.61	-1.0
3,140,260	-		HGI48_RS14030	0.61	-1.0
3,140,260	-		HGI48_RS14030	0.61	+0.2
3,140,260	-		HGI48_RS14030	0.61	+0.6
3,140,284	+		HGI48_RS14030	0.62	+0.5
3,140,366	+				+1.6
3,140,367	-		HGI48_RS14030	0.67	+0.4
3,140,367	-		HGI48_RS14030	0.67	-0.1
3,140,367	-		HGI48_RS14030	0.67	-0.1
3,140,456	+		HGI48_RS14030	0.73	+0.4
3,140,585	+		HGI48_RS14030	0.81	-0.4
3,140,585	+				-0.2
3,140,586	-		HGI48_RS14030	0.81	+1.2
3,140,586	-		HGI48_RS14030	0.81	-0.3
3,140,586	-		HGI48_RS14030	0.81	-0.2
3,140,661	+				+2.0
3,140,689	-		HGI48_RS14030	0.88	-1.0
3,140,768	+				-1.0
3,140,768	+				-0.6
3,140,769	-				+1.2
3,140,769	-				-1.4
3,140,826	+				-0.8
3,140,908	+				-0.3
3,140,908	+				-2.4
3,140,908	+				-1.2
3,140,909	-				+0.1
3,140,924	+				+0.6
3,140,924	+				+2.0
3,140,925	-				+1.7
3,140,925	-				+0.2
3,140,925	-				+0.9
3,140,941	+				+0.9
3,141,006	+				-0.3
3,141,020	+				-1.6
3,141,021	-				-0.9
3,141,022	+				-0.3
3,141,022	+				-0.1
3,141,072	-				-0.6
3,141,142	+				+0.4
3,141,142	+				-0.1
3,141,142	+				-0.6
3,141,213	-				-1.2
3,141,221	+				-1.8
3,141,222	-				+0.7
3,141,225	+				-1.2
3,141,225	+				+0.4
3,141,226	-				-0.4
3,141,226	-				-0.6
3,141,226	-				-0.4
3,141,226	-				+0.4
3,141,368	+				-0.0
3,141,368	+				+0.1
3,141,369	-				+0.1
3,141,369	-				-0.6
3,141,377	+				-0.5
3,141,378	-				-0.6
3,141,378	-				-1.3
3,141,378	-				-2.9
3,141,488	+				+0.4
3,141,489	-		HGI48_RS14035	0.37	-0.2
3,141,578	+		HGI48_RS14035	0.67	-0.9
3,141,578	+		HGI48_RS14035	0.67	+0.7
3,141,579	-		HGI48_RS14035	0.67	-0.8
3,141,768	+		HGI48_RS14040	0.11	+0.6
3,141,769	-		HGI48_RS14040	0.11	+0.4
3,141,772	-		HGI48_RS14040	0.12	-0.4