Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12995

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,843,142	+		HGI48_RS12990	0.31	-0.4
2,843,215	+		HGI48_RS12990	0.37	-1.2
2,843,215	+		HGI48_RS12990	0.37	-1.0
2,843,215	+				-1.2
2,843,215	+		HGI48_RS12990	0.37	-1.1
2,843,215	+		HGI48_RS12990	0.37	-1.7
2,843,216	-		HGI48_RS12990	0.37	-2.0
2,843,221	+				+0.3
2,843,221	+		HGI48_RS12990	0.37	-0.4
2,843,225	-		HGI48_RS12990	0.38	-0.6
2,843,459	+		HGI48_RS12990	0.57	-1.0
2,843,463	+		HGI48_RS12990	0.58	-2.0
2,843,481	+		HGI48_RS12990	0.59	+0.3
2,843,481	+		HGI48_RS12990	0.59	+0.3
2,843,507	-		HGI48_RS12990	0.61	-0.7
2,843,527	+		HGI48_RS12990	0.63	-2.2
2,843,527	+		HGI48_RS12990	0.63	-0.7
2,843,528	-		HGI48_RS12990	0.63	-0.7
2,843,623	+		HGI48_RS12990	0.71	-0.7
2,843,623	+		HGI48_RS12990	0.71	-0.7
2,843,623	+		HGI48_RS12990	0.71	-0.7
2,843,688	+		HGI48_RS12990	0.76	-0.1
2,843,689	-		HGI48_RS12990	0.77	+0.8
2,843,691	+		HGI48_RS12990	0.77	-0.4
2,843,691	+		HGI48_RS12990	0.77	-0.1
2,843,737	-		HGI48_RS12990	0.81	-2.2
2,843,758	-		HGI48_RS12990	0.82	+0.8
2,843,879	-				-1.2
2,843,965	+				-0.5
2,843,966	-				-0.7
2,843,966	-				-2.0
2,843,966	-				-3.0
2,844,020	+				-0.4
2,844,020	+				-0.3
2,844,020	+				-0.4
2,844,020	+				-1.2
2,844,021	-				-0.2
2,844,021	-				+0.3
2,844,021	-				-1.7
2,844,082	+				-1.2
2,844,085	+				-0.7
2,844,085	+				+0.7
2,844,086	-				+0.3
2,844,086	-				+2.3
2,844,086	-				-1.1
2,844,139	+		HGI48_RS12995	0.13	-1.2
2,844,215	-		HGI48_RS12995	0.25	-0.7
2,844,327	-		HGI48_RS12995	0.42	-0.8
2,844,426	-		HGI48_RS12995	0.58	-1.5
2,844,509	+		HGI48_RS12995	0.71	+0.6
2,844,510	-		HGI48_RS12995	0.71	+0.7
2,844,510	-				+0.9
2,844,680	-				-1.2
2,844,813	-				+0.1
2,844,815	+		HGI48_RS13000	0.10	-1.5
2,844,858	+				+0.3
2,844,914	+		HGI48_RS13000	0.28	+1.3
2,844,914	+		HGI48_RS13000	0.28	-0.3
2,844,914	+		HGI48_RS13000	0.28	-0.7
2,844,915	-		HGI48_RS13000	0.28	-2.0
2,844,963	+		HGI48_RS13000	0.37	+0.0
2,844,963	+		HGI48_RS13000	0.37	-1.0
2,844,963	+		HGI48_RS13000	0.37	+0.1
2,844,964	-				-1.2
2,844,964	-		HGI48_RS13000	0.37	-0.7
2,844,968	+		HGI48_RS13000	0.38	-1.2
2,844,968	+		HGI48_RS13000	0.38	-0.5
2,844,968	+		HGI48_RS13000	0.38	+0.3
2,844,969	-		HGI48_RS13000	0.38	+0.3
2,844,969	-		HGI48_RS13000	0.38	+1.5
2,845,005	+		HGI48_RS13000	0.45	-0.2
2,845,005	+		HGI48_RS13000	0.45	+0.9
2,845,006	-		HGI48_RS13000	0.45	+0.0
2,845,006	-				-0.2
2,845,006	-		HGI48_RS13000	0.45	+0.2
2,845,006	-		HGI48_RS13000	0.45	-0.2
2,845,006	-		HGI48_RS13000	0.45	-0.7
2,845,006	-		HGI48_RS13000	0.45	+0.9
2,845,033	+		HGI48_RS13000	0.50	+0.2
2,845,033	+				+1.1
2,845,033	+		HGI48_RS13000	0.50	+0.5
2,845,033	+		HGI48_RS13000	0.50	-0.7
2,845,033	+		HGI48_RS13000	0.50	-1.0
2,845,033	+		HGI48_RS13000	0.50	+0.5
2,845,034	-		HGI48_RS13000	0.50	+0.4
2,845,065	+		HGI48_RS13000	0.56	-0.6
2,845,066	-		HGI48_RS13000	0.56	-2.2
2,845,125	+		HGI48_RS13000	0.66	-0.5
2,845,125	+		HGI48_RS13000	0.66	-0.5
2,845,125	+		HGI48_RS13000	0.66	-0.7
2,845,125	+				-1.2
2,845,126	-		HGI48_RS13000	0.67	+0.0
2,845,127	+		HGI48_RS13000	0.67	+0.6
2,845,128	-		HGI48_RS13000	0.67	-0.1
2,845,128	-		HGI48_RS13000	0.67	-0.2
2,845,128	-		HGI48_RS13000	0.67	-1.5
2,845,176	+		HGI48_RS13000	0.76	-0.5
2,845,176	+		HGI48_RS13000	0.76	+0.0
2,845,176	+		HGI48_RS13000	0.76	-1.2
2,845,176	+		HGI48_RS13000	0.76	-1.0
2,845,177	-		HGI48_RS13000	0.76	-0.2
2,845,189	-		HGI48_RS13000	0.78	+0.3
2,845,189	-		HGI48_RS13000	0.78	-1.2
2,845,293	+				-0.7
2,845,369	+				-0.3
2,845,369	+				-0.2
2,845,370	-				-2.2
2,845,370	-				-2.2
2,845,370	-				-0.9
2,845,390	+				+0.2
2,845,505	+				-1.2
2,845,505	+				+0.3
2,845,506	-				-0.1
2,845,509	+				+0.2
2,845,509	+				-0.8
2,845,510	-				+0.2
2,845,514	+				-2.7
2,845,515	-				-1.7
2,845,518	-				-0.4
2,845,521	-				-0.1
2,845,532	-				-1.7
2,845,570	-				+0.0
2,845,575	+				+0.1
2,845,579	+				-2.2
2,845,580	-				-0.5
2,845,600	+				-0.3
2,845,601	-				+0.2
2,845,629	+				-0.3
2,845,629	+				-0.5
2,845,630	-				-0.0
2,845,630	-				-1.5
2,845,630	-				-0.5
2,845,630	-				-0.5
2,845,630	-				-1.1
2,845,632	+				+0.3
2,845,633	-				-2.0
2,845,633	-				-2.2
2,845,668	+				-0.1
2,845,668	+				-1.8
2,845,669	-				-1.5
2,845,669	-				+0.2
2,845,669	-				-0.7
2,845,669	-				-1.7
2,845,669	-				-0.2
2,845,669	-				-0.3
2,845,669	-				+0.3
2,845,669	-				-1.8
2,845,673	-				+0.3
2,845,673	-				-2.0