Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12415

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,712,835	-		HGI48_RS12410	0.57	-0.4
2,712,863	-		HGI48_RS12410	0.60	-2.7
2,712,925	-		HGI48_RS12410	0.67	-1.4
2,712,925	-		HGI48_RS12410	0.67	-0.1
2,713,221	-				-0.1
2,713,235	-				-1.0
2,713,360	+				+0.3
2,713,361	-				-0.1
2,713,361	-				+1.0
2,713,424	+				-1.5
2,713,425	-				+0.8
2,713,425	-				-0.7
2,713,425	-				+0.3
2,713,433	+				-0.9
2,713,433	+				+0.6
2,713,434	-				-0.7
2,713,440	+				-1.3
2,713,440	+				-2.2
2,713,457	+				+0.6
2,713,458	-				-0.4
2,713,458	-				+1.1
2,713,458	-				-0.2
2,713,458	-				+0.3
2,713,465	+				-2.0
2,713,466	-				-0.5
2,713,529	+				+0.3
2,713,557	-				+0.3
2,713,572	+				+0.8
2,713,572	+				-0.1
2,713,572	+				-3.1
2,713,573	-				-0.1
2,713,635	+				+0.1
2,713,635	+				+0.3
2,713,635	+				-1.5
2,713,636	-				-0.0
2,713,800	+		HGI48_RS12415	0.18	-2.0
2,713,800	+		HGI48_RS12415	0.18	-0.9
2,713,800	+		HGI48_RS12415	0.18	+0.5
2,713,800	+		HGI48_RS12415	0.18	+1.2
2,713,800	+		HGI48_RS12415	0.18	+0.9
2,713,801	-		HGI48_RS12415	0.18	+1.3
2,713,801	-		HGI48_RS12415	0.18	-0.1
2,713,801	-		HGI48_RS12415	0.18	+0.2
2,713,801	-		HGI48_RS12415	0.18	+0.2
2,713,801	-		HGI48_RS12415	0.18	-0.3
2,713,801	-		HGI48_RS12415	0.18	-0.9
2,713,801	-		HGI48_RS12415	0.18	-1.5
2,713,801	-		HGI48_RS12415	0.18	-0.1
2,713,801	-		HGI48_RS12415	0.18	-0.1
2,713,801	-		HGI48_RS12415	0.18	-0.2
2,713,801	-				-1.2
2,713,801	-				+2.7
2,713,801	-		HGI48_RS12415	0.18	+0.6
2,713,805	+		HGI48_RS12415	0.18	-0.1
2,713,805	+				+1.1
2,713,805	+		HGI48_RS12415	0.18	-1.0
2,713,805	+		HGI48_RS12415	0.18	+0.9
2,713,806	-		HGI48_RS12415	0.18	-1.2
2,713,806	-				+0.3
2,713,806	-				+1.9
2,713,806	-		HGI48_RS12415	0.18	+1.1
2,713,930	-		HGI48_RS12415	0.31	-0.3
2,713,930	-		HGI48_RS12415	0.31	+0.5
2,713,990	-				-0.7
2,714,009	+		HGI48_RS12415	0.39	-0.8
2,714,100	+		HGI48_RS12415	0.48	-2.2
2,714,101	-		HGI48_RS12415	0.48	-1.8
2,714,124	+		HGI48_RS12415	0.51	+0.9
2,714,125	-		HGI48_RS12415	0.51	-0.2
2,714,125	-				+1.6
2,714,125	-				-0.2
2,714,236	+				+2.5
2,714,322	+		HGI48_RS12415	0.71	-2.0
2,714,322	+		HGI48_RS12415	0.71	+1.2
2,714,323	-		HGI48_RS12415	0.71	+0.0
2,714,324	+		HGI48_RS12415	0.71	-1.4
2,714,324	+		HGI48_RS12415	0.71	-0.2
2,714,324	+		HGI48_RS12415	0.71	-1.0
2,714,324	+		HGI48_RS12415	0.71	-0.4
2,714,324	+		HGI48_RS12415	0.71	-2.2
2,714,324	+		HGI48_RS12415	0.71	+0.4
2,714,325	-		HGI48_RS12415	0.71	+0.6
2,714,325	-		HGI48_RS12415	0.71	+1.8
2,714,368	+		HGI48_RS12415	0.75	-0.4
2,714,369	-		HGI48_RS12415	0.75	+0.3
2,714,371	+		HGI48_RS12415	0.76	-0.9
2,714,372	-		HGI48_RS12415	0.76	-0.1
2,714,410	+		HGI48_RS12415	0.80	+0.3
2,714,410	+		HGI48_RS12415	0.80	+0.0
2,714,411	-				+1.3
2,714,411	-		HGI48_RS12415	0.80	+0.3
2,714,411	-		HGI48_RS12415	0.80	-0.5
2,714,411	-		HGI48_RS12415	0.80	-0.2
2,714,562	+				-0.1
2,714,562	+				-2.0
2,714,562	+				-0.2
2,714,586	+				+0.7
2,714,592	+				-0.0
2,714,593	-				+0.6
2,714,593	-				+2.1
2,714,616	-				-0.9
2,714,645	+				+0.2
2,714,725	+				+0.7
2,714,725	+				-0.1
2,714,761	+				+0.9
2,714,780	+				+0.1
2,714,781	-				-0.7
2,714,785	+				+0.2
2,714,785	+				+0.6
2,714,786	-				-0.1
2,714,788	-				+0.9
2,714,788	-				-0.5
2,714,832	+				-1.0
2,714,852	-				-1.0
2,714,871	+				+0.2
2,714,871	+				+1.0
2,714,871	+				-0.4
2,714,872	-				+0.8
2,714,872	-				+0.2
2,714,872	-				+0.9
2,714,877	+				-0.3
2,714,877	+				-1.0
2,714,877	+				-0.1
2,714,878	-				-1.4
2,714,878	-				-0.7
2,714,928	+				+1.1
2,714,928	+				+0.8
2,714,929	-				-1.5
2,714,988	+		HGI48_RS12420	0.14	+0.9
2,714,988	+		HGI48_RS12420	0.14	-0.7
2,714,989	-		HGI48_RS12420	0.14	+0.3
2,715,002	-		HGI48_RS12420	0.14	+0.3
2,715,002	-		HGI48_RS12420	0.14	-0.2
2,715,002	-				-0.7
2,715,066	+		HGI48_RS12420	0.18	+0.9
2,715,066	+		HGI48_RS12420	0.18	-0.7
2,715,066	+		HGI48_RS12420	0.18	+0.3
2,715,067	-				+0.8
2,715,090	-		HGI48_RS12420	0.20	-1.0
2,715,090	-		HGI48_RS12420	0.20	+0.9
2,715,090	-				+0.3
2,715,090	-		HGI48_RS12420	0.20	+0.9
2,715,090	-		HGI48_RS12420	0.20	-1.4
2,715,126	+				+0.8
2,715,126	+		HGI48_RS12420	0.22	+0.0
2,715,231	+		HGI48_RS12420	0.29	-2.8
2,715,231	+		HGI48_RS12420	0.29	+0.6
2,715,232	-		HGI48_RS12420	0.29	-1.8
2,715,232	-		HGI48_RS12420	0.29	+0.3
2,715,232	-		HGI48_RS12420	0.29	+0.1
2,715,232	-		HGI48_RS12420	0.29	+0.3
2,715,322	-		HGI48_RS12420	0.34	-0.7
2,715,322	-		HGI48_RS12420	0.34	+0.6
2,715,382	-		HGI48_RS12420	0.38	-0.4
2,715,428	-		HGI48_RS12420	0.41	-0.1
2,715,441	+		HGI48_RS12420	0.42	+0.9
2,715,442	-		HGI48_RS12420	0.42	+1.2
2,715,501	+		HGI48_RS12420	0.46	+0.4
2,715,502	-		HGI48_RS12420	0.46	-1.0
2,715,502	-		HGI48_RS12420	0.46	-1.0
2,715,504	+		HGI48_RS12420	0.46	-2.7
2,715,504	+		HGI48_RS12420	0.46	+0.1
2,715,505	-		HGI48_RS12420	0.46	+0.3
2,715,505	-		HGI48_RS12420	0.46	-2.2
2,715,505	-				-0.2
2,715,505	-		HGI48_RS12420	0.46	-0.7
2,715,507	+		HGI48_RS12420	0.46	+0.2
2,715,507	+		HGI48_RS12420	0.46	-0.7
2,715,507	+		HGI48_RS12420	0.46	+0.9
2,715,507	+		HGI48_RS12420	0.46	+0.3
2,715,507	+		HGI48_RS12420	0.46	-2.5
2,715,508	-				+1.1
2,715,508	-		HGI48_RS12420	0.46	+0.6
2,715,508	-		HGI48_RS12420	0.46	+0.6
2,715,508	-				+1.3
2,715,508	-		HGI48_RS12420	0.46	-0.7
2,715,508	-		HGI48_RS12420	0.46	+0.5
2,715,508	-		HGI48_RS12420	0.46	-0.4
2,715,508	-		HGI48_RS12420	0.46	+0.3
2,715,508	-		HGI48_RS12420	0.46	-0.1
2,715,508	-		HGI48_RS12420	0.46	-1.7
2,715,508	-		HGI48_RS12420	0.46	+1.2