Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09315

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,999,982	+		HGI48_RS09305	0.56	+0.7
1,999,983	-		HGI48_RS09305	0.56	+0.2
1,999,983	-				-0.3
2,000,006	+		HGI48_RS09305	0.58	+0.7
2,000,059	+		HGI48_RS09305	0.61	-1.1
2,000,122	-		HGI48_RS09305	0.64	+0.3
2,000,173	-		HGI48_RS09305	0.67	+0.2
2,000,173	-		HGI48_RS09305	0.67	-0.6
2,000,183	+		HGI48_RS09305	0.68	-0.4
2,000,327	+		HGI48_RS09305	0.76	-1.4
2,000,328	-		HGI48_RS09305	0.76	-1.7
2,000,360	-		HGI48_RS09305	0.78	+0.8
2,000,360	-				+1.0
2,000,360	-		HGI48_RS09305	0.78	+0.0
2,000,385	+		HGI48_RS09305	0.79	-1.0
2,000,386	-		HGI48_RS09305	0.79	-0.4
2,000,386	-		HGI48_RS09305	0.79	+1.0
2,000,386	-		HGI48_RS09305	0.79	-1.0
2,000,428	-		HGI48_RS09305	0.82	-0.0
2,000,592	+				+0.7
2,000,592	+				-0.7
2,000,592	+				+0.3
2,000,593	-				+0.1
2,000,593	-				-0.0
2,000,865	-		HGI48_RS09310	0.49	-1.7
2,000,919	+		HGI48_RS09310	0.72	+0.3
2,000,919	+		HGI48_RS09310	0.72	-1.0
2,000,948	+		HGI48_RS09310	0.84	+0.0
2,000,949	-		HGI48_RS09310	0.84	+0.3
2,000,949	-		HGI48_RS09310	0.84	+0.3
2,000,972	-				+1.5
2,001,058	+		HGI48_RS09315	0.13	-1.1
2,001,058	+		HGI48_RS09315	0.13	+0.6
2,001,059	-		HGI48_RS09315	0.13	+0.4
2,001,059	-		HGI48_RS09315	0.13	-1.7
2,001,059	-		HGI48_RS09315	0.13	-0.0
2,001,059	-		HGI48_RS09315	0.13	-0.7
2,001,059	-		HGI48_RS09315	0.13	+0.3
2,001,258	+		HGI48_RS09315	0.39	+1.3
2,001,258	+				-0.3
2,001,258	+		HGI48_RS09315	0.39	+0.0
2,001,258	+		HGI48_RS09315	0.39	-1.7
2,001,259	-		HGI48_RS09315	0.39	+0.3
2,001,259	-		HGI48_RS09315	0.39	-0.7
2,001,259	-		HGI48_RS09315	0.39	-1.1
2,001,278	+		HGI48_RS09315	0.42	-2.9
2,001,534	-		HGI48_RS09315	0.76	-1.7
2,001,534	-		HGI48_RS09315	0.76	-0.2
2,001,544	+		HGI48_RS09315	0.78	+1.9
2,001,544	+		HGI48_RS09315	0.78	+0.7
2,001,544	+		HGI48_RS09315	0.78	+0.7
2,001,668	-				+0.7
2,001,823	+		HGI48_RS09320	0.11	-1.2
2,001,983	+				-0.3
2,001,983	+		HGI48_RS09320	0.26	-0.0
2,001,984	-		HGI48_RS09320	0.26	+0.8
2,001,984	-		HGI48_RS09320	0.26	+0.2
2,001,984	-		HGI48_RS09320	0.26	-2.0
2,001,984	-		HGI48_RS09320	0.26	-0.0
2,001,984	-		HGI48_RS09320	0.26	+0.7
2,001,985	+		HGI48_RS09320	0.26	-0.0
2,002,040	+		HGI48_RS09320	0.31	+0.3
2,002,040	+		HGI48_RS09320	0.31	-0.8
2,002,040	+				-0.7
2,002,040	+		HGI48_RS09320	0.31	-1.3
2,002,075	+		HGI48_RS09320	0.34	+0.6
2,002,196	+				+0.3
2,002,196	+		HGI48_RS09320	0.46	-0.3
2,002,196	+		HGI48_RS09320	0.46	-0.3
2,002,196	+		HGI48_RS09320	0.46	+0.5
2,002,220	+		HGI48_RS09320	0.48	-0.2
2,002,220	+		HGI48_RS09320	0.48	-0.5
2,002,220	+		HGI48_RS09320	0.48	-0.7
2,002,220	+		HGI48_RS09320	0.48	+1.0
2,002,221	-		HGI48_RS09320	0.48	-2.9
2,002,221	-		HGI48_RS09320	0.48	+0.2
2,002,238	+				+0.7
2,002,274	-		HGI48_RS09320	0.53	-1.0
2,002,307	+		HGI48_RS09320	0.56	-0.7
2,002,307	+		HGI48_RS09320	0.56	+0.7
2,002,307	+		HGI48_RS09320	0.56	-0.3
2,002,348	+		HGI48_RS09320	0.60	+0.6
2,002,348	+		HGI48_RS09320	0.60	-2.2
2,002,349	-				-0.3
2,002,377	-		HGI48_RS09320	0.62	-1.1
2,002,394	+		HGI48_RS09320	0.64	-0.9
2,002,394	+		HGI48_RS09320	0.64	-1.9
2,002,394	+		HGI48_RS09320	0.64	-0.2
2,002,409	+		HGI48_RS09320	0.65	+0.2
2,002,479	+				-0.3
2,002,479	+		HGI48_RS09320	0.72	-0.3
2,002,480	-		HGI48_RS09320	0.72	+0.0
2,002,480	-		HGI48_RS09320	0.72	-1.0
2,002,480	-		HGI48_RS09320	0.72	-1.6
2,002,522	+				-0.7
2,002,522	+		HGI48_RS09320	0.76	+0.3
2,002,544	+		HGI48_RS09320	0.78	+0.0
2,002,545	-				+1.5
2,002,547	+		HGI48_RS09320	0.78	+0.3
2,002,547	+		HGI48_RS09320	0.78	-2.7
2,002,547	+		HGI48_RS09320	0.78	-1.6
2,002,548	-		HGI48_RS09320	0.78	-0.7
2,002,579	+		HGI48_RS09320	0.81	-1.0
2,002,624	+		HGI48_RS09320	0.85	-1.4
2,002,624	+				+1.5
2,002,624	+		HGI48_RS09320	0.85	+0.9