Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08950 and HGI48_RS08955 are separated by 431 nucleotides HGI48_RS08955 and HGI48_RS08960 are separated by 161 nucleotides HGI48_RS08960 and HGI48_RS08965 are separated by 60 nucleotides HGI48_RS08965 and HGI48_RS08970 are separated by 225 nucleotides
HGI48_RS08950: HGI48_RS08950 - heat-shock protein, at 1,929,017 to 1,929,175
_RS08950
HGI48_RS08955: HGI48_RS08955 - hypothetical protein, at 1,929,607 to 1,929,981
_RS08955
HGI48_RS08960: HGI48_RS08960 - hypothetical protein, at 1,930,143 to 1,930,505
_RS08960
HGI48_RS08965: HGI48_RS08965 - hypothetical protein, at 1,930,566 to 1,930,964
_RS08965
HGI48_RS08970: HGI48_RS08970 - ABC transporter ATP-binding protein, at 1,931,190 to 1,931,867
_RS08970
Position (kb) 1930
1931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1929.173 kb on + strand at 1929.236 kb on + strand at 1929.241 kb on - strand at 1929.347 kb on - strand at 1929.440 kb on - strand at 1929.519 kb on - strand at 1929.617 kb on + strand at 1929.706 kb on + strand, within HGI48_RS08955 at 1929.706 kb on + strand, within HGI48_RS08955 at 1929.810 kb on + strand, within HGI48_RS08955 at 1929.967 kb on - strand at 1930.049 kb on + strand at 1930.105 kb on - strand at 1930.107 kb on - strand at 1930.149 kb on + strand at 1930.149 kb on + strand at 1930.199 kb on + strand, within HGI48_RS08960 at 1930.199 kb on + strand, within HGI48_RS08960 at 1930.264 kb on + strand, within HGI48_RS08960 at 1930.268 kb on + strand, within HGI48_RS08960 at 1930.268 kb on + strand, within HGI48_RS08960 at 1930.269 kb on - strand, within HGI48_RS08960 at 1930.269 kb on - strand, within HGI48_RS08960 at 1930.273 kb on - strand, within HGI48_RS08960 at 1930.341 kb on - strand at 1930.366 kb on - strand, within HGI48_RS08960 at 1930.370 kb on + strand, within HGI48_RS08960 at 1930.524 kb on - strand at 1930.577 kb on + strand at 1930.699 kb on - strand, within HGI48_RS08965 at 1930.835 kb on + strand, within HGI48_RS08965 at 1930.862 kb on + strand, within HGI48_RS08965 at 1931.047 kb on - strand at 1931.048 kb on + strand at 1931.141 kb on + strand at 1931.141 kb on + strand at 1931.205 kb on - strand at 1931.205 kb on - strand at 1931.257 kb on + strand at 1931.275 kb on + strand at 1931.275 kb on + strand, within HGI48_RS08970 at 1931.333 kb on + strand, within HGI48_RS08970 at 1931.347 kb on + strand, within HGI48_RS08970 at 1931.348 kb on - strand, within HGI48_RS08970 at 1931.348 kb on - strand, within HGI48_RS08970 at 1931.382 kb on + strand, within HGI48_RS08970 at 1931.382 kb on + strand, within HGI48_RS08970 at 1931.382 kb on + strand, within HGI48_RS08970 at 1931.383 kb on - strand, within HGI48_RS08970 at 1931.383 kb on - strand, within HGI48_RS08970 at 1931.383 kb on - strand at 1931.441 kb on + strand, within HGI48_RS08970
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,929,173 + +0.3 1,929,236 + -2.0 1,929,241 - +1.1 1,929,347 - -0.7 1,929,440 - +0.3 1,929,519 - -0.3 1,929,617 + +0.5 1,929,706 + HGI48_RS08955 0.26 -2.8 1,929,706 + HGI48_RS08955 0.26 +0.5 1,929,810 + HGI48_RS08955 0.54 -0.7 1,929,967 - -0.7 1,930,049 + -0.7 1,930,105 - +1.2 1,930,107 - -0.4 1,930,149 + -0.6 1,930,149 + -0.7 1,930,199 + HGI48_RS08960 0.15 -1.0 1,930,199 + HGI48_RS08960 0.15 -0.2 1,930,264 + HGI48_RS08960 0.33 -0.6 1,930,268 + HGI48_RS08960 0.34 -0.2 1,930,268 + HGI48_RS08960 0.34 -1.0 1,930,269 - HGI48_RS08960 0.35 -1.0 1,930,269 - HGI48_RS08960 0.35 -1.8 1,930,273 - HGI48_RS08960 0.36 +0.2 1,930,341 - +1.1 1,930,366 - HGI48_RS08960 0.61 -1.8 1,930,370 + HGI48_RS08960 0.63 -1.0 1,930,524 - +0.6 1,930,577 + -1.3 1,930,699 - HGI48_RS08965 0.33 +0.7 1,930,835 + HGI48_RS08965 0.67 +0.3 1,930,862 + HGI48_RS08965 0.74 -3.0 1,931,047 - +1.3 1,931,048 + +0.7 1,931,141 + -1.0 1,931,141 + -1.3 1,931,205 - +0.7 1,931,205 - -0.5 1,931,257 + -0.0 1,931,275 + +2.1 1,931,275 + HGI48_RS08970 0.13 -2.3 1,931,333 + HGI48_RS08970 0.21 -0.0 1,931,347 + HGI48_RS08970 0.23 +0.7 1,931,348 - HGI48_RS08970 0.23 +0.9 1,931,348 - HGI48_RS08970 0.23 +0.0 1,931,382 + HGI48_RS08970 0.28 +1.3 1,931,382 + HGI48_RS08970 0.28 -0.1 1,931,382 + HGI48_RS08970 0.28 -1.4 1,931,383 - HGI48_RS08970 0.28 -0.1 1,931,383 - HGI48_RS08970 0.28 +0.5 1,931,383 - +0.7 1,931,441 + HGI48_RS08970 0.37 +0.3
Or see this region's nucleotide sequence