Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08150 and HGI48_RS08155 are separated by 380 nucleotides HGI48_RS08155 and HGI48_RS08160 are separated by 10 nucleotides HGI48_RS08160 and HGI48_RS08165 are separated by 266 nucleotides
HGI48_RS08150: HGI48_RS08150 - flavin reductase family protein, at 1,751,333 to 1,751,923
_RS08150
HGI48_RS08155: HGI48_RS08155 - DUF1971 domain-containing protein, at 1,752,304 to 1,752,636
_RS08155
HGI48_RS08160: HGI48_RS08160 - DUF1869 domain-containing protein, at 1,752,647 to 1,752,985
_RS08160
HGI48_RS08165: HGI48_RS08165 - GNAT family N-acetyltransferase, at 1,753,252 to 1,753,767
_RS08165
Position (kb)
1752
1753 Strain fitness (log2 ratio)
-2
-1
0
1 at 1751.727 kb on - strand, within HGI48_RS08150 at 1751.851 kb on + strand, within HGI48_RS08150 at 1751.851 kb on + strand, within HGI48_RS08150 at 1751.931 kb on - strand at 1751.940 kb on + strand at 1751.950 kb on + strand at 1751.951 kb on - strand at 1751.951 kb on - strand at 1752.001 kb on - strand at 1752.019 kb on - strand at 1752.151 kb on + strand at 1752.152 kb on - strand at 1752.153 kb on + strand at 1752.153 kb on + strand at 1752.153 kb on + strand at 1752.153 kb on + strand at 1752.154 kb on - strand at 1752.205 kb on - strand at 1752.299 kb on - strand at 1752.317 kb on + strand at 1752.327 kb on + strand at 1752.331 kb on + strand at 1752.331 kb on + strand at 1752.332 kb on - strand at 1752.385 kb on - strand, within HGI48_RS08155 at 1752.516 kb on - strand, within HGI48_RS08155 at 1752.582 kb on + strand, within HGI48_RS08155 at 1752.582 kb on + strand, within HGI48_RS08155 at 1752.582 kb on + strand, within HGI48_RS08155 at 1752.643 kb on - strand at 1752.730 kb on + strand, within HGI48_RS08160 at 1752.739 kb on - strand, within HGI48_RS08160 at 1752.741 kb on - strand, within HGI48_RS08160 at 1752.859 kb on - strand, within HGI48_RS08160 at 1752.934 kb on + strand, within HGI48_RS08160 at 1753.004 kb on + strand at 1753.009 kb on - strand at 1753.016 kb on - strand at 1753.016 kb on - strand at 1753.043 kb on - strand at 1753.083 kb on + strand at 1753.163 kb on + strand at 1753.318 kb on + strand, within HGI48_RS08165 at 1753.484 kb on + strand, within HGI48_RS08165 at 1753.484 kb on + strand, within HGI48_RS08165 at 1753.484 kb on + strand, within HGI48_RS08165 at 1753.485 kb on - strand, within HGI48_RS08165 at 1753.485 kb on - strand, within HGI48_RS08165 at 1753.669 kb on + strand, within HGI48_RS08165 at 1753.743 kb on + strand at 1753.834 kb on + strand at 1753.834 kb on + strand at 1753.876 kb on - strand at 1753.878 kb on + strand at 1753.891 kb on + strand at 1753.892 kb on - strand at 1753.920 kb on - strand at 1753.925 kb on - strand at 1753.928 kb on - strand at 1753.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,751,727 - HGI48_RS08150 0.67 +0.4 1,751,851 + HGI48_RS08150 0.88 -1.2 1,751,851 + HGI48_RS08150 0.88 +0.4 1,751,931 - -0.2 1,751,940 + -0.0 1,751,950 + -0.9 1,751,951 - +0.6 1,751,951 - -0.1 1,752,001 - -0.5 1,752,019 - -1.4 1,752,151 + +0.4 1,752,152 - -0.6 1,752,153 + -1.2 1,752,153 + +0.6 1,752,153 + -1.9 1,752,153 + -0.2 1,752,154 - -2.6 1,752,205 - +0.2 1,752,299 - +0.8 1,752,317 + +0.4 1,752,327 + -0.4 1,752,331 + -1.6 1,752,331 + +0.5 1,752,332 - +0.7 1,752,385 - HGI48_RS08155 0.24 -1.2 1,752,516 - HGI48_RS08155 0.64 +0.4 1,752,582 + HGI48_RS08155 0.83 -0.0 1,752,582 + HGI48_RS08155 0.83 -0.3 1,752,582 + HGI48_RS08155 0.83 -1.2 1,752,643 - -0.6 1,752,730 + HGI48_RS08160 0.24 -0.8 1,752,739 - HGI48_RS08160 0.27 +0.2 1,752,741 - HGI48_RS08160 0.28 -1.0 1,752,859 - HGI48_RS08160 0.63 -0.5 1,752,934 + HGI48_RS08160 0.85 -0.0 1,753,004 + -0.9 1,753,009 - -0.6 1,753,016 - -1.9 1,753,016 - +1.6 1,753,043 - -0.4 1,753,083 + -1.8 1,753,163 + +1.0 1,753,318 + HGI48_RS08165 0.13 -0.1 1,753,484 + HGI48_RS08165 0.45 -0.0 1,753,484 + HGI48_RS08165 0.45 -1.9 1,753,484 + HGI48_RS08165 0.45 -0.6 1,753,485 - HGI48_RS08165 0.45 -0.9 1,753,485 - HGI48_RS08165 0.45 -0.4 1,753,669 + HGI48_RS08165 0.81 -0.8 1,753,743 + -0.2 1,753,834 + +0.2 1,753,834 + -0.1 1,753,876 - +0.4 1,753,878 + -2.2 1,753,891 + +1.0 1,753,892 - -0.8 1,753,920 - -1.6 1,753,925 - -0.5 1,753,928 - -1.2 1,753,944 - -0.5
Or see this region's nucleotide sequence