Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06490

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,374,278	+				+0.5
1,374,304	+				-0.7
1,374,561	+				+0.9
1,374,588	+		HGI48_RS06480	0.27	-0.1
1,374,589	-		HGI48_RS06480	0.28	-0.2
1,374,606	+		HGI48_RS06480	0.32	-2.1
1,374,611	+		HGI48_RS06480	0.33	-0.8
1,374,612	-		HGI48_RS06480	0.34	-3.1
1,374,732	+		HGI48_RS06480	0.64	-0.9
1,374,733	-		HGI48_RS06480	0.65	-1.8
1,374,737	+				-0.5
1,374,738	-		HGI48_RS06480	0.66	-0.7
1,374,738	-				-0.5
1,374,868	+				+1.3
1,374,869	-				-0.7
1,374,894	-				-2.3
1,374,894	-				-1.0
1,374,913	+		HGI48_RS06485	0.14	+0.3
1,374,914	-		HGI48_RS06485	0.14	-0.5
1,374,916	+		HGI48_RS06485	0.15	-0.1
1,374,916	+		HGI48_RS06485	0.15	-2.1
1,374,949	-		HGI48_RS06485	0.24	-1.1
1,374,949	-				+0.5
1,374,957	+		HGI48_RS06485	0.27	-0.5
1,374,957	+		HGI48_RS06485	0.27	+0.9
1,374,957	+				-1.1
1,374,959	+		HGI48_RS06485	0.27	-0.5
1,375,032	-		HGI48_RS06485	0.48	-0.6
1,375,173	+		HGI48_RS06485	0.89	-1.3
1,375,173	+		HGI48_RS06485	0.89	-0.8
1,375,173	+		HGI48_RS06485	0.89	-1.6
1,375,173	+		HGI48_RS06485	0.89	-1.5
1,375,173	+		HGI48_RS06485	0.89	-0.3
1,375,174	-		HGI48_RS06485	0.89	-0.2
1,375,399	+				-0.1
1,375,418	+		HGI48_RS06490	0.12	-0.5
1,375,418	+		HGI48_RS06490	0.12	-0.5
1,375,418	+		HGI48_RS06490	0.12	+0.2
1,375,418	+		HGI48_RS06490	0.12	+1.5
1,375,418	+		HGI48_RS06490	0.12	-1.6
1,375,419	-		HGI48_RS06490	0.12	-0.8
1,375,419	-		HGI48_RS06490	0.12	-2.1
1,375,419	-				-1.1
1,375,419	-		HGI48_RS06490	0.12	-0.1
1,375,469	+		HGI48_RS06490	0.15	-0.9
1,375,469	+		HGI48_RS06490	0.15	-1.1
1,375,469	+		HGI48_RS06490	0.15	-0.1
1,375,469	+		HGI48_RS06490	0.15	-0.6
1,375,470	-		HGI48_RS06490	0.15	-0.5
1,375,470	-		HGI48_RS06490	0.15	-1.6
1,375,471	+		HGI48_RS06490	0.15	-2.1
1,375,471	+		HGI48_RS06490	0.15	-0.7
1,375,472	-		HGI48_RS06490	0.15	-1.3
1,375,472	-		HGI48_RS06490	0.15	-2.1
1,375,554	-		HGI48_RS06490	0.19	+2.0
1,375,831	+		HGI48_RS06490	0.35	-1.6
1,375,831	+		HGI48_RS06490	0.35	-0.7
1,375,835	+		HGI48_RS06490	0.35	-2.1
1,375,836	-		HGI48_RS06490	0.35	+0.1
1,376,073	+		HGI48_RS06490	0.49	+0.4
1,376,073	+		HGI48_RS06490	0.49	+0.8
1,376,074	-		HGI48_RS06490	0.49	-0.5
1,376,076	+		HGI48_RS06490	0.49	+0.5
1,376,077	-		HGI48_RS06490	0.49	-3.1
1,376,077	-		HGI48_RS06490	0.49	-1.1
1,376,229	+				+1.1
1,376,230	-				-1.1
1,376,274	-		HGI48_RS06490	0.60	-1.8
1,376,713	+		HGI48_RS06490	0.85	-1.8
1,376,714	-		HGI48_RS06490	0.85	-0.2
1,376,969	-				+0.5
1,376,972	+				-1.0
1,376,973	-				-1.2
1,376,973	-				-1.3
1,376,973	-				-0.7
1,376,975	+				-0.2
1,376,975	+				-0.3
1,376,975	+				+1.1
1,376,976	-				-0.5
1,376,976	-				-2.1
1,376,976	-				+0.9
1,376,991	+				+1.4
1,376,992	-				+0.5
1,376,992	-				-1.1
1,376,992	-				-0.8
1,376,992	-				-1.6
1,376,992	-				-1.5
1,376,992	-				-1.9
1,376,992	-				-0.5
1,377,039	+				-0.3
1,377,078	+				-0.5
1,377,078	+				-1.5
1,377,078	+				-1.5
1,377,079	-				-1.1
1,377,080	+				-1.1
1,377,080	+				-0.7
1,377,080	+				-0.7
1,377,080	+				-1.8
1,377,081	-				-1.3
1,377,081	-				-1.3
1,377,218	+		HGI48_RS06495	0.29	-1.0
1,377,236	+		HGI48_RS06495	0.31	-1.1
1,377,236	+		HGI48_RS06495	0.31	+0.1
1,377,237	-				+1.1
1,377,237	-		HGI48_RS06495	0.31	-0.3
1,377,239	+		HGI48_RS06495	0.32	-1.8
1,377,239	+		HGI48_RS06495	0.32	-0.8
1,377,239	+		HGI48_RS06495	0.32	+0.3
1,377,240	-		HGI48_RS06495	0.32	-0.1
1,377,240	-		HGI48_RS06495	0.32	+0.2
1,377,270	-		HGI48_RS06495	0.36	-0.5
1,377,270	-		HGI48_RS06495	0.36	-0.5
1,377,461	+		HGI48_RS06495	0.63	+1.0
1,377,461	+		HGI48_RS06495	0.63	+0.2
1,377,461	+		HGI48_RS06495	0.63	+0.5
1,377,461	+		HGI48_RS06495	0.63	-0.9
1,377,461	+				+1.5
1,377,461	+		HGI48_RS06495	0.63	-0.8
1,377,462	-		HGI48_RS06495	0.63	-0.7
1,377,462	-		HGI48_RS06495	0.63	-1.3
1,377,462	-		HGI48_RS06495	0.63	-2.3
1,377,462	-		HGI48_RS06495	0.63	-1.3
1,377,462	-				-0.1
1,377,462	-		HGI48_RS06495	0.63	-0.3
1,377,620	-		HGI48_RS06495	0.85	-1.8
1,377,620	-		HGI48_RS06495	0.85	-1.7
1,377,620	-				-1.1
1,377,620	-		HGI48_RS06495	0.85	-0.2
1,377,696	-				-2.3
1,377,696	-				+0.7
1,377,743	+				-1.4
1,377,743	+				-2.1
1,377,744	-				-0.2
1,377,744	-				-0.5
1,377,744	-				-1.3
1,377,823	-				-0.6
1,377,823	-				+0.5
1,377,839	+				+0.7
1,377,860	+				+0.4
1,377,860	+				+0.5
1,377,860	+				-0.0
1,377,902	+				+0.1
1,377,904	+				-0.1
1,377,915	+				+0.0
1,377,915	+				-1.5
1,377,915	+				+2.8
1,377,915	+				+0.0
1,377,915	+				-1.5
1,377,915	+				-1.8
1,377,915	+				-2.1
1,377,916	-				-1.1
1,377,916	-				-0.8
1,377,948	+				-0.8
1,377,951	+				-0.6