Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS06155 and HGI48_RS06160 are separated by 231 nucleotides HGI48_RS06160 and HGI48_RS06165 are separated by 547 nucleotides HGI48_RS06165 and HGI48_RS06170 are separated by 61 nucleotides HGI48_RS06170 and HGI48_RS06175 are separated by 209 nucleotides
HGI48_RS06155: HGI48_RS06155 - ArsC family reductase, at 1,310,947 to 1,311,330
_RS06155
HGI48_RS06160: HGI48_RS06160 - protein YpfM, at 1,311,562 to 1,311,621
_RS06160
HGI48_RS06165: HGI48_RS06165 - transcription antiterminator/RNA stability regulator CspE, at 1,312,169 to 1,312,378
_RS06165
HGI48_RS06170: HGI48_RS06170 - fluoride efflux transporter CrcB, at 1,312,440 to 1,312,823
_RS06170
HGI48_RS06175: HGI48_RS06175 - deaminated glutathione amidase, at 1,313,033 to 1,313,821
_RS06175
Position (kb) 1312
1313 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1311.376 kb on - strand at 1311.383 kb on - strand at 1311.383 kb on - strand at 1311.517 kb on + strand at 1311.517 kb on + strand at 1311.518 kb on - strand at 1311.519 kb on + strand at 1311.520 kb on - strand at 1311.523 kb on - strand at 1311.555 kb on + strand at 1311.616 kb on - strand at 1311.619 kb on + strand at 1311.620 kb on - strand at 1311.636 kb on - strand at 1311.636 kb on - strand at 1311.640 kb on + strand at 1311.640 kb on + strand at 1311.641 kb on - strand at 1311.664 kb on + strand at 1311.665 kb on - strand at 1311.688 kb on - strand at 1311.690 kb on + strand at 1311.798 kb on + strand at 1311.955 kb on + strand at 1312.004 kb on + strand at 1312.008 kb on - strand at 1312.016 kb on - strand at 1312.058 kb on + strand at 1312.180 kb on + strand at 1312.181 kb on - strand at 1312.181 kb on - strand at 1312.254 kb on + strand, within HGI48_RS06165 at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.420 kb on + strand at 1312.452 kb on + strand at 1312.656 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.664 kb on - strand at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.683 kb on - strand at 1312.683 kb on - strand, within HGI48_RS06170 at 1312.742 kb on + strand, within HGI48_RS06170 at 1312.742 kb on + strand, within HGI48_RS06170 at 1312.743 kb on - strand, within HGI48_RS06170 at 1312.746 kb on - strand, within HGI48_RS06170 at 1312.809 kb on + strand at 1312.809 kb on + strand at 1312.814 kb on + strand at 1312.815 kb on - strand at 1312.817 kb on + strand at 1312.817 kb on + strand at 1312.817 kb on + strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.945 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.987 kb on + strand at 1313.003 kb on - strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.014 kb on - strand at 1313.014 kb on - strand at 1313.014 kb on - strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.018 kb on - strand at 1313.018 kb on - strand at 1313.018 kb on - strand at 1313.070 kb on + strand at 1313.097 kb on + strand at 1313.097 kb on + strand at 1313.103 kb on + strand at 1313.173 kb on + strand at 1313.173 kb on + strand, within HGI48_RS06175 at 1313.174 kb on - strand, within HGI48_RS06175 at 1313.275 kb on + strand at 1313.285 kb on - strand, within HGI48_RS06175 at 1313.311 kb on + strand, within HGI48_RS06175 at 1313.311 kb on + strand at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.354 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand at 1313.372 kb on + strand at 1313.373 kb on - strand, within HGI48_RS06175
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,311,376 - +0.1 1,311,383 - -0.6 1,311,383 - -1.3 1,311,517 + -2.0 1,311,517 + -0.0 1,311,518 - -1.0 1,311,519 + -1.1 1,311,520 - -1.0 1,311,523 - -0.9 1,311,555 + -0.5 1,311,616 - +0.5 1,311,619 + -1.5 1,311,620 - -0.0 1,311,636 - +0.3 1,311,636 - +0.5 1,311,640 + +1.1 1,311,640 + +0.5 1,311,641 - +0.1 1,311,664 + -2.0 1,311,665 - +0.5 1,311,688 - +0.1 1,311,690 + -0.1 1,311,798 + +0.2 1,311,955 + +1.0 1,312,004 + -2.0 1,312,008 - -1.0 1,312,016 - -1.5 1,312,058 + +0.4 1,312,180 + -0.5 1,312,181 - -2.6 1,312,181 - +0.3 1,312,254 + HGI48_RS06165 0.40 -0.5 1,312,377 - +0.5 1,312,377 - -1.3 1,312,420 + -1.2 1,312,452 + -0.0 1,312,656 + HGI48_RS06170 0.56 +1.2 1,312,663 + HGI48_RS06170 0.58 +0.3 1,312,663 + HGI48_RS06170 0.58 -0.9 1,312,663 + HGI48_RS06170 0.58 -1.8 1,312,664 - +0.5 1,312,664 - HGI48_RS06170 0.58 -0.1 1,312,664 - HGI48_RS06170 0.58 -0.3 1,312,664 - HGI48_RS06170 0.58 -0.6 1,312,664 - HGI48_RS06170 0.58 +0.1 1,312,683 - -1.0 1,312,683 - HGI48_RS06170 0.63 -0.5 1,312,742 + HGI48_RS06170 0.79 +1.0 1,312,742 + HGI48_RS06170 0.79 -0.1 1,312,743 - HGI48_RS06170 0.79 -0.5 1,312,746 - HGI48_RS06170 0.80 -1.3 1,312,809 + +0.2 1,312,809 + -2.0 1,312,814 + +1.0 1,312,815 - +0.0 1,312,817 + -0.0 1,312,817 + -0.3 1,312,817 + -1.6 1,312,818 - +0.3 1,312,818 - -0.0 1,312,818 - +1.5 1,312,818 - -0.8 1,312,818 - +0.8 1,312,819 + +0.6 1,312,819 + -0.0 1,312,819 + -0.6 1,312,819 + -0.0 1,312,819 + +0.5 1,312,819 + -0.0 1,312,819 + +0.3 1,312,819 + -0.5 1,312,819 + +1.3 1,312,819 + -0.5 1,312,819 + +0.2 1,312,819 + +1.4 1,312,820 - -0.4 1,312,820 - +0.9 1,312,820 - -0.2 1,312,820 - +1.0 1,312,820 - -2.0 1,312,820 - +0.5 1,312,820 - +0.5 1,312,820 - +0.7 1,312,820 - -1.0 1,312,820 - +0.5 1,312,820 - +0.7 1,312,820 - -2.3 1,312,820 - -0.9 1,312,823 + -0.7 1,312,823 + -0.3 1,312,823 + +1.9 1,312,823 + -1.0 1,312,823 + -0.9 1,312,823 + -0.5 1,312,823 + +0.5 1,312,823 + +0.0 1,312,823 + +1.5 1,312,823 + -0.2 1,312,824 - -0.3 1,312,824 - -0.0 1,312,824 - +0.8 1,312,824 - -0.3 1,312,824 - -0.1 1,312,824 - -0.0 1,312,824 - +0.3 1,312,824 - +0.9 1,312,824 - +0.2 1,312,824 - -0.8 1,312,945 + +0.5 1,312,948 + -0.9 1,312,948 + -1.0 1,312,948 + -0.6 1,312,948 + +1.0 1,312,987 + +0.2 1,313,003 - +1.3 1,313,013 + -0.1 1,313,013 + -0.0 1,313,013 + -2.0 1,313,013 + +0.4 1,313,014 - +0.3 1,313,014 - +0.3 1,313,014 - -1.6 1,313,017 + +0.5 1,313,017 + +2.5 1,313,017 + -2.5 1,313,017 + +1.3 1,313,017 + -0.0 1,313,018 - +1.8 1,313,018 - -0.7 1,313,018 - -0.3 1,313,070 + -1.0 1,313,097 + -0.7 1,313,097 + -0.3 1,313,103 + +0.2 1,313,173 + +1.3 1,313,173 + HGI48_RS06175 0.18 -0.0 1,313,174 - HGI48_RS06175 0.18 -0.3 1,313,275 + +2.5 1,313,285 - HGI48_RS06175 0.32 -0.5 1,313,311 + HGI48_RS06175 0.35 +1.4 1,313,311 + +1.5 1,313,312 - HGI48_RS06175 0.35 -1.3 1,313,312 - HGI48_RS06175 0.35 -0.3 1,313,312 - HGI48_RS06175 0.35 -0.7 1,313,314 + HGI48_RS06175 0.36 -0.3 1,313,314 + HGI48_RS06175 0.36 +1.3 1,313,314 + HGI48_RS06175 0.36 -0.8 1,313,314 + HGI48_RS06175 0.36 +0.5 1,313,314 + HGI48_RS06175 0.36 -0.5 1,313,314 + HGI48_RS06175 0.36 -0.6 1,313,315 - HGI48_RS06175 0.36 -1.5 1,313,315 - HGI48_RS06175 0.36 +0.9 1,313,315 - HGI48_RS06175 0.36 -0.3 1,313,315 - HGI48_RS06175 0.36 +0.4 1,313,315 - +1.1 1,313,315 - HGI48_RS06175 0.36 -0.7 1,313,354 + HGI48_RS06175 0.41 -0.5 1,313,372 + HGI48_RS06175 0.43 -1.2 1,313,372 + HGI48_RS06175 0.43 +1.4 1,313,372 + HGI48_RS06175 0.43 -2.0 1,313,372 + -1.0 1,313,372 + +1.3 1,313,373 - HGI48_RS06175 0.43 -0.9
Or see this region's nucleotide sequence