Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04685 and HGI48_RS04690 are separated by 111 nucleotides HGI48_RS04690 and HGI48_RS04695 are separated by 8 nucleotides HGI48_RS04695 and HGI48_RS04700 are separated by 510 nucleotides
HGI48_RS04685: HGI48_RS04685 - glycoside hydrolase family 5 protein, at 985,638 to 986,585
_RS04685
HGI48_RS04690: HGI48_RS04690 - CcdB family protein, at 986,697 to 986,858
_RS04690
HGI48_RS04695: HGI48_RS04695 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 986,867 to 987,004
_RS04695
HGI48_RS04700: HGI48_RS04700 - RES family NAD+ phosphorylase, at 987,515 to 988,168
_RS04700
Position (kb) 986
987 Strain fitness (log2 ratio) -2
-1
0
1
2 at 985.707 kb on - strand at 985.739 kb on + strand at 985.754 kb on + strand at 985.766 kb on + strand, within HGI48_RS04685 at 985.826 kb on + strand, within HGI48_RS04685 at 985.838 kb on + strand, within HGI48_RS04685 at 985.839 kb on - strand, within HGI48_RS04685 at 985.850 kb on - strand at 985.935 kb on - strand, within HGI48_RS04685 at 985.935 kb on - strand, within HGI48_RS04685 at 985.969 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.984 kb on - strand at 985.984 kb on - strand, within HGI48_RS04685 at 985.984 kb on - strand, within HGI48_RS04685 at 985.990 kb on + strand at 985.991 kb on - strand, within HGI48_RS04685 at 985.991 kb on - strand, within HGI48_RS04685 at 986.091 kb on + strand, within HGI48_RS04685 at 986.091 kb on + strand at 986.091 kb on + strand, within HGI48_RS04685 at 986.091 kb on + strand, within HGI48_RS04685 at 986.100 kb on + strand, within HGI48_RS04685 at 986.100 kb on + strand, within HGI48_RS04685 at 986.101 kb on - strand, within HGI48_RS04685 at 986.101 kb on - strand, within HGI48_RS04685 at 986.146 kb on - strand, within HGI48_RS04685 at 986.274 kb on + strand at 986.275 kb on - strand, within HGI48_RS04685 at 986.289 kb on + strand, within HGI48_RS04685 at 986.339 kb on - strand, within HGI48_RS04685 at 986.444 kb on + strand, within HGI48_RS04685 at 986.445 kb on - strand, within HGI48_RS04685 at 986.445 kb on - strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.449 kb on - strand at 986.449 kb on - strand, within HGI48_RS04685 at 986.449 kb on - strand, within HGI48_RS04685 at 986.449 kb on - strand, within HGI48_RS04685 at 986.449 kb on - strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.451 kb on - strand at 986.451 kb on - strand, within HGI48_RS04685 at 986.451 kb on - strand, within HGI48_RS04685 at 986.451 kb on - strand, within HGI48_RS04685 at 986.451 kb on - strand at 986.451 kb on - strand, within HGI48_RS04685 at 986.460 kb on + strand, within HGI48_RS04685 at 986.465 kb on - strand, within HGI48_RS04685 at 986.475 kb on + strand, within HGI48_RS04685 at 986.476 kb on - strand, within HGI48_RS04685 at 986.476 kb on - strand, within HGI48_RS04685 at 986.523 kb on - strand at 986.553 kb on - strand at 986.556 kb on - strand at 986.556 kb on - strand at 986.602 kb on + strand at 986.602 kb on + strand at 986.602 kb on + strand at 986.602 kb on + strand at 986.603 kb on - strand at 986.603 kb on - strand at 986.607 kb on - strand at 986.607 kb on - strand at 986.607 kb on - strand at 986.607 kb on - strand at 986.633 kb on + strand at 986.634 kb on - strand at 986.658 kb on + strand at 986.658 kb on + strand at 986.659 kb on - strand at 986.662 kb on + strand at 986.662 kb on + strand at 986.662 kb on + strand at 986.663 kb on - strand at 986.663 kb on - strand at 986.663 kb on - strand at 986.663 kb on - strand at 986.727 kb on - strand, within HGI48_RS04690 at 986.727 kb on - strand, within HGI48_RS04690 at 986.733 kb on - strand, within HGI48_RS04690 at 986.735 kb on + strand, within HGI48_RS04690 at 986.736 kb on - strand, within HGI48_RS04690 at 986.736 kb on - strand, within HGI48_RS04690 at 986.736 kb on - strand, within HGI48_RS04690 at 986.744 kb on + strand, within HGI48_RS04690 at 986.759 kb on - strand at 986.777 kb on + strand, within HGI48_RS04690 at 986.866 kb on + strand at 986.866 kb on + strand at 986.866 kb on + strand at 986.866 kb on + strand at 986.867 kb on - strand at 986.867 kb on - strand at 986.867 kb on - strand at 986.867 kb on - strand at 986.873 kb on - strand at 986.972 kb on + strand, within HGI48_RS04695 at 986.973 kb on - strand, within HGI48_RS04695 at 987.013 kb on - strand at 987.013 kb on - strand at 987.013 kb on - strand at 987.013 kb on - strand at 987.038 kb on + strand at 987.044 kb on + strand at 987.045 kb on - strand at 987.045 kb on - strand at 987.045 kb on - strand at 987.119 kb on - strand at 987.123 kb on - strand at 987.135 kb on + strand at 987.136 kb on - strand at 987.136 kb on - strand at 987.136 kb on - strand at 987.136 kb on - strand at 987.140 kb on - strand at 987.140 kb on - strand at 987.140 kb on - strand at 987.142 kb on - strand at 987.369 kb on - strand at 987.402 kb on + strand at 987.402 kb on + strand at 987.403 kb on - strand at 987.403 kb on - strand at 987.432 kb on + strand at 987.457 kb on + strand at 987.457 kb on + strand at 987.457 kb on + strand at 987.458 kb on - strand at 987.460 kb on + strand at 987.460 kb on + strand at 987.512 kb on + strand at 987.513 kb on - strand at 987.513 kb on - strand at 987.582 kb on - strand, within HGI48_RS04700 at 987.637 kb on + strand, within HGI48_RS04700 at 987.662 kb on - strand, within HGI48_RS04700 at 987.662 kb on - strand, within HGI48_RS04700 at 987.662 kb on - strand at 987.662 kb on - strand at 987.662 kb on - strand, within HGI48_RS04700 at 987.760 kb on - strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand at 987.764 kb on - strand at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.844 kb on + strand, within HGI48_RS04700
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 985,707 - -1.6 985,739 + -1.0 985,754 + +0.6 985,766 + HGI48_RS04685 0.14 -0.4 985,826 + HGI48_RS04685 0.20 +0.9 985,838 + HGI48_RS04685 0.21 -0.4 985,839 - HGI48_RS04685 0.21 +1.0 985,850 - +1.9 985,935 - HGI48_RS04685 0.31 +0.7 985,935 - HGI48_RS04685 0.31 +1.0 985,969 + HGI48_RS04685 0.35 -0.9 985,983 + HGI48_RS04685 0.36 +0.4 985,983 + HGI48_RS04685 0.36 +0.0 985,983 + HGI48_RS04685 0.36 +0.0 985,983 + HGI48_RS04685 0.36 -0.1 985,983 + HGI48_RS04685 0.36 +0.6 985,983 + HGI48_RS04685 0.36 -0.5 985,983 + HGI48_RS04685 0.36 -0.4 985,984 - +1.0 985,984 - HGI48_RS04685 0.36 +0.0 985,984 - HGI48_RS04685 0.36 -0.4 985,990 + -1.0 985,991 - HGI48_RS04685 0.37 -0.4 985,991 - HGI48_RS04685 0.37 +0.0 986,091 + HGI48_RS04685 0.48 -0.4 986,091 + +2.4 986,091 + HGI48_RS04685 0.48 -0.0 986,091 + HGI48_RS04685 0.48 +0.6 986,100 + HGI48_RS04685 0.49 -1.7 986,100 + HGI48_RS04685 0.49 -0.4 986,101 - HGI48_RS04685 0.49 +0.0 986,101 - HGI48_RS04685 0.49 +0.6 986,146 - HGI48_RS04685 0.54 -0.3 986,274 + +1.2 986,275 - HGI48_RS04685 0.67 -2.0 986,289 + HGI48_RS04685 0.69 -1.7 986,339 - HGI48_RS04685 0.74 -0.7 986,444 + HGI48_RS04685 0.85 -0.2 986,445 - HGI48_RS04685 0.85 +0.0 986,445 - HGI48_RS04685 0.85 +0.2 986,448 + HGI48_RS04685 0.85 -0.7 986,448 + HGI48_RS04685 0.85 -1.0 986,448 + HGI48_RS04685 0.85 -0.8 986,448 + HGI48_RS04685 0.85 +0.6 986,448 + HGI48_RS04685 0.85 -0.4 986,448 + HGI48_RS04685 0.85 +0.9 986,448 + HGI48_RS04685 0.85 -0.7 986,448 + HGI48_RS04685 0.85 -0.3 986,449 - +1.6 986,449 - HGI48_RS04685 0.86 -0.2 986,449 - HGI48_RS04685 0.86 -1.7 986,449 - HGI48_RS04685 0.86 +0.1 986,449 - HGI48_RS04685 0.86 +1.1 986,450 + HGI48_RS04685 0.86 +0.1 986,450 + HGI48_RS04685 0.86 -0.4 986,450 + HGI48_RS04685 0.86 +0.3 986,450 + HGI48_RS04685 0.86 -1.4 986,450 + HGI48_RS04685 0.86 -0.1 986,450 + HGI48_RS04685 0.86 -0.7 986,451 - +0.6 986,451 - HGI48_RS04685 0.86 -0.1 986,451 - HGI48_RS04685 0.86 -1.7 986,451 - HGI48_RS04685 0.86 +0.8 986,451 - +1.0 986,451 - HGI48_RS04685 0.86 -2.4 986,460 + HGI48_RS04685 0.87 -1.4 986,465 - HGI48_RS04685 0.87 -0.1 986,475 + HGI48_RS04685 0.88 +0.3 986,476 - HGI48_RS04685 0.88 -0.3 986,476 - HGI48_RS04685 0.88 -0.1 986,523 - +0.6 986,553 - +0.3 986,556 - -1.0 986,556 - +0.8 986,602 + -0.2 986,602 + -0.6 986,602 + -0.2 986,602 + +1.0 986,603 - +0.0 986,603 - +1.6 986,607 - -0.6 986,607 - -0.1 986,607 - -1.4 986,607 - -1.0 986,633 + +0.2 986,634 - -0.4 986,658 + -1.4 986,658 + -0.6 986,659 - +2.0 986,662 + -0.1 986,662 + +0.6 986,662 + -0.7 986,663 - +0.6 986,663 - +0.7 986,663 - +0.6 986,663 - +0.6 986,727 - HGI48_RS04690 0.19 -2.2 986,727 - HGI48_RS04690 0.19 -2.0 986,733 - HGI48_RS04690 0.22 -2.4 986,735 + HGI48_RS04690 0.23 -0.5 986,736 - HGI48_RS04690 0.24 +0.6 986,736 - HGI48_RS04690 0.24 -0.2 986,736 - HGI48_RS04690 0.24 +0.6 986,744 + HGI48_RS04690 0.29 -0.7 986,759 - -0.4 986,777 + HGI48_RS04690 0.49 +0.4 986,866 + +1.6 986,866 + +0.6 986,866 + +0.9 986,866 + -0.3 986,867 - -0.4 986,867 - +0.3 986,867 - +0.8 986,867 - +0.8 986,873 - +0.6 986,972 + HGI48_RS04695 0.76 -0.4 986,973 - HGI48_RS04695 0.77 -1.0 987,013 - -0.1 987,013 - -1.4 987,013 - +0.2 987,013 - -0.4 987,038 + +0.6 987,044 + -0.5 987,045 - -0.5 987,045 - -0.6 987,045 - +0.6 987,119 - -1.0 987,123 - -1.0 987,135 + +1.9 987,136 - +0.0 987,136 - -0.1 987,136 - +0.3 987,136 - +0.6 987,140 - +0.0 987,140 - +1.6 987,140 - -1.4 987,142 - -0.4 987,369 - +0.0 987,402 + -1.5 987,402 + -0.8 987,403 - +1.2 987,403 - -0.7 987,432 + +0.3 987,457 + -0.7 987,457 + +0.6 987,457 + -1.4 987,458 - -0.6 987,460 + -1.1 987,460 + +0.6 987,512 + +0.2 987,513 - +1.6 987,513 - +0.2 987,582 - HGI48_RS04700 0.10 +0.0 987,637 + HGI48_RS04700 0.19 -2.4 987,662 - HGI48_RS04700 0.22 +1.0 987,662 - HGI48_RS04700 0.22 -0.7 987,662 - +0.0 987,662 - +0.6 987,662 - HGI48_RS04700 0.22 -0.1 987,760 - HGI48_RS04700 0.37 -1.7 987,763 + HGI48_RS04700 0.38 +0.3 987,763 + HGI48_RS04700 0.38 +0.6 987,763 + HGI48_RS04700 0.38 +0.8 987,763 + HGI48_RS04700 0.38 -0.7 987,763 + HGI48_RS04700 0.38 +0.5 987,763 + HGI48_RS04700 0.38 -0.2 987,764 - HGI48_RS04700 0.38 -1.0 987,764 - HGI48_RS04700 0.38 +0.1 987,764 - HGI48_RS04700 0.38 +0.9 987,764 - +1.3 987,764 - +1.3 987,764 - HGI48_RS04700 0.38 -0.0 987,764 - HGI48_RS04700 0.38 +0.0 987,764 - HGI48_RS04700 0.38 -0.4 987,844 + HGI48_RS04700 0.50 -0.2
Or see this region's nucleotide sequence