Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04625 and HGI48_RS04630 are separated by 675 nucleotides HGI48_RS04630 and HGI48_RS04635 are separated by 333 nucleotides HGI48_RS04635 and HGI48_RS04640 are separated by 99 nucleotides
HGI48_RS04625: HGI48_RS04625 - helix-turn-helix domain-containing protein, at 968,835 to 969,449
_RS04625
HGI48_RS04630: HGI48_RS04630 - rhamnogalacturonate lyase, at 970,125 to 971,855
_RS04630
HGI48_RS04635: HGI48_RS04635 - TIGR00645 family protein, at 972,189 to 972,722
_RS04635
HGI48_RS04640: HGI48_RS04640 - molybdopterin-dependent oxidoreductase, at 972,822 to 975,083
_RS04640
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 969.197 kb on + strand, within HGI48_RS04625 at 969.197 kb on + strand, within HGI48_RS04625 at 969.198 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.303 kb on + strand at 969.308 kb on + strand, within HGI48_RS04625 at 969.325 kb on + strand, within HGI48_RS04625 at 969.326 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.335 kb on + strand, within HGI48_RS04625 at 969.393 kb on + strand at 969.393 kb on + strand at 969.393 kb on + strand at 969.394 kb on - strand at 969.394 kb on - strand at 969.398 kb on - strand at 969.398 kb on - strand at 969.416 kb on + strand at 969.417 kb on - strand at 969.417 kb on - strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.420 kb on - strand at 969.491 kb on - strand at 969.496 kb on - strand at 969.503 kb on + strand at 969.503 kb on + strand at 969.504 kb on - strand at 969.513 kb on + strand at 969.552 kb on + strand at 969.553 kb on - strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.598 kb on - strand at 969.605 kb on + strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.646 kb on + strand at 969.647 kb on - strand at 969.655 kb on + strand at 969.658 kb on + strand at 969.659 kb on - strand at 969.662 kb on + strand at 969.663 kb on - strand at 969.690 kb on + strand at 969.719 kb on - strand at 969.741 kb on + strand at 969.742 kb on - strand at 969.744 kb on + strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.746 kb on + strand at 969.746 kb on + strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.764 kb on - strand at 969.811 kb on + strand at 969.843 kb on + strand at 969.844 kb on - strand at 969.844 kb on - strand at 969.844 kb on - strand at 969.873 kb on + strand at 969.873 kb on + strand at 969.874 kb on - strand at 969.883 kb on + strand at 969.884 kb on - strand at 969.884 kb on - strand at 969.887 kb on + strand at 969.977 kb on - strand at 969.977 kb on - strand at 970.027 kb on + strand at 970.027 kb on + strand at 970.028 kb on - strand at 970.028 kb on - strand at 970.029 kb on + strand at 970.029 kb on + strand at 970.030 kb on - strand at 970.030 kb on - strand at 970.039 kb on + strand at 970.039 kb on + strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.043 kb on + strand at 970.043 kb on + strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.055 kb on + strand at 970.056 kb on - strand at 970.057 kb on + strand at 970.057 kb on + strand at 970.058 kb on - strand at 970.159 kb on + strand at 970.159 kb on + strand at 970.160 kb on - strand at 970.160 kb on - strand at 970.212 kb on + strand at 970.213 kb on - strand at 970.236 kb on - strand at 970.277 kb on - strand at 970.297 kb on + strand at 970.408 kb on + strand, within HGI48_RS04630 at 970.408 kb on + strand, within HGI48_RS04630 at 970.408 kb on + strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.471 kb on + strand, within HGI48_RS04630 at 970.471 kb on + strand, within HGI48_RS04630 at 970.474 kb on + strand, within HGI48_RS04630 at 970.475 kb on - strand, within HGI48_RS04630 at 970.546 kb on + strand, within HGI48_RS04630 at 970.546 kb on + strand, within HGI48_RS04630 at 970.547 kb on - strand at 970.547 kb on - strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.012 kb on - strand, within HGI48_RS04630 at 971.012 kb on - strand at 971.012 kb on - strand, within HGI48_RS04630 at 971.012 kb on - strand, within HGI48_RS04630 at 971.012 kb on - strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.152 kb on + strand, within HGI48_RS04630 at 971.155 kb on + strand, within HGI48_RS04630 at 971.155 kb on + strand, within HGI48_RS04630 at 971.245 kb on + strand, within HGI48_RS04630 at 971.349 kb on - strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.447 kb on - strand, within HGI48_RS04630 at 971.447 kb on - strand, within HGI48_RS04630 at 971.447 kb on - strand at 971.447 kb on - strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.525 kb on - strand, within HGI48_RS04630 at 971.525 kb on - strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.856 kb on - strand at 971.895 kb on + strand at 971.895 kb on + strand at 971.896 kb on - strand at 971.909 kb on - strand at 971.916 kb on + strand at 971.917 kb on - strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.015 kb on - strand at 972.063 kb on + strand at 972.150 kb on + strand at 972.175 kb on - strand at 972.210 kb on - strand at 972.210 kb on - strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.247 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand at 972.610 kb on + strand, within HGI48_RS04635 at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 969,197 + HGI48_RS04625 0.59 -0.3 969,197 + HGI48_RS04625 0.59 +0.4 969,198 - HGI48_RS04625 0.59 -0.4 969,230 - HGI48_RS04625 0.64 +0.0 969,230 - HGI48_RS04625 0.64 +0.5 969,303 + -1.0 969,308 + HGI48_RS04625 0.77 +0.4 969,325 + HGI48_RS04625 0.80 +0.0 969,326 - HGI48_RS04625 0.80 -0.3 969,330 - HGI48_RS04625 0.80 -0.1 969,330 - HGI48_RS04625 0.80 -0.9 969,335 + HGI48_RS04625 0.81 -0.1 969,393 + -2.0 969,393 + +1.0 969,393 + -0.4 969,394 - -0.8 969,394 - -0.8 969,398 - +1.1 969,398 - +1.4 969,416 + -0.1 969,417 - -0.4 969,417 - -1.0 969,419 + -1.1 969,419 + -0.1 969,419 + +0.8 969,419 + -0.1 969,420 - -2.0 969,491 - -1.3 969,496 - -0.1 969,503 + -1.4 969,503 + +0.9 969,504 - +0.1 969,513 + +0.4 969,552 + +1.2 969,553 - +0.1 969,563 + +0.4 969,563 + -1.9 969,563 + +1.3 969,563 + +0.6 969,563 + -0.3 969,563 + -1.2 969,563 + -0.1 969,563 + +0.8 969,563 + +0.6 969,563 + -0.5 969,563 + +1.3 969,564 - -0.3 969,564 - +0.9 969,564 - -2.7 969,564 - -2.0 969,564 - -1.0 969,564 - +0.1 969,564 - +0.3 969,598 - -0.7 969,605 + +0.2 969,606 - -1.1 969,606 - -0.5 969,606 - -0.7 969,606 - +0.6 969,646 + -1.4 969,647 - -0.3 969,655 + -0.4 969,658 + -1.5 969,659 - +0.0 969,662 + +1.9 969,663 - -1.7 969,690 + +0.6 969,719 - -0.6 969,741 + -1.4 969,742 - +1.3 969,744 + +0.0 969,745 - -1.4 969,745 - +0.3 969,745 - -1.9 969,746 + -1.6 969,746 + -2.4 969,747 - -1.2 969,747 - +0.6 969,747 - +0.0 969,747 - -1.6 969,764 - +0.2 969,811 + +0.6 969,843 + +0.6 969,844 - +2.0 969,844 - -0.8 969,844 - -0.1 969,873 + -1.0 969,873 + -0.9 969,874 - -0.1 969,883 + +0.2 969,884 - -0.1 969,884 - -0.4 969,887 + -0.1 969,977 - -0.8 969,977 - -0.2 970,027 + -1.0 970,027 + -1.0 970,028 - +0.6 970,028 - +0.6 970,029 + -1.0 970,029 + +0.6 970,030 - +0.6 970,030 - -1.4 970,039 + +1.6 970,039 + -0.2 970,040 - -2.0 970,040 - -0.1 970,040 - -1.4 970,040 - -0.8 970,043 + +0.6 970,043 + +0.4 970,044 - +0.3 970,044 - +1.3 970,044 - -2.4 970,044 - +1.6 970,055 + -1.0 970,056 - -1.1 970,057 + +0.3 970,057 + -0.6 970,058 - +0.6 970,159 + +0.6 970,159 + -0.1 970,160 - +1.1 970,160 - -0.1 970,212 + -0.4 970,213 - +0.0 970,236 - -0.8 970,277 - +0.4 970,297 + +1.0 970,408 + HGI48_RS04630 0.16 -0.2 970,408 + HGI48_RS04630 0.16 +1.0 970,408 + HGI48_RS04630 0.16 -1.2 970,409 - HGI48_RS04630 0.16 -0.4 970,409 - HGI48_RS04630 0.16 +0.2 970,409 - HGI48_RS04630 0.16 +0.3 970,409 - HGI48_RS04630 0.16 +0.9 970,409 - HGI48_RS04630 0.16 +0.0 970,409 - HGI48_RS04630 0.16 +0.4 970,442 + HGI48_RS04630 0.18 -3.3 970,442 + HGI48_RS04630 0.18 +0.1 970,442 + HGI48_RS04630 0.18 +1.2 970,442 + HGI48_RS04630 0.18 +0.3 970,471 + HGI48_RS04630 0.20 -2.5 970,471 + HGI48_RS04630 0.20 -0.4 970,474 + HGI48_RS04630 0.20 +0.5 970,475 - HGI48_RS04630 0.20 -1.8 970,546 + HGI48_RS04630 0.24 -1.0 970,546 + HGI48_RS04630 0.24 +0.6 970,547 - +0.6 970,547 - HGI48_RS04630 0.24 +1.6 971,011 + HGI48_RS04630 0.51 -1.0 971,011 + HGI48_RS04630 0.51 +0.9 971,011 + HGI48_RS04630 0.51 -2.4 971,011 + HGI48_RS04630 0.51 +0.1 971,012 - HGI48_RS04630 0.51 +1.1 971,012 - +0.6 971,012 - HGI48_RS04630 0.51 +0.3 971,012 - HGI48_RS04630 0.51 +0.0 971,012 - HGI48_RS04630 0.51 +0.2 971,092 + HGI48_RS04630 0.56 +0.3 971,092 + HGI48_RS04630 0.56 -0.8 971,092 + HGI48_RS04630 0.56 -0.1 971,092 + HGI48_RS04630 0.56 -1.1 971,092 + HGI48_RS04630 0.56 -1.5 971,092 + HGI48_RS04630 0.56 -0.4 971,093 - HGI48_RS04630 0.56 -0.4 971,093 - HGI48_RS04630 0.56 +0.2 971,093 - HGI48_RS04630 0.56 -0.0 971,093 - HGI48_RS04630 0.56 -0.3 971,093 - HGI48_RS04630 0.56 -0.4 971,152 + HGI48_RS04630 0.59 -0.4 971,155 + HGI48_RS04630 0.60 +0.6 971,155 + HGI48_RS04630 0.60 +0.1 971,245 + HGI48_RS04630 0.65 -0.4 971,349 - HGI48_RS04630 0.71 +0.4 971,446 + HGI48_RS04630 0.76 -3.3 971,446 + HGI48_RS04630 0.76 -0.1 971,446 + HGI48_RS04630 0.76 -0.4 971,446 + HGI48_RS04630 0.76 -0.6 971,446 + HGI48_RS04630 0.76 -0.5 971,446 + HGI48_RS04630 0.76 +0.4 971,446 + HGI48_RS04630 0.76 -1.4 971,446 + HGI48_RS04630 0.76 +0.2 971,447 - HGI48_RS04630 0.76 -2.0 971,447 - HGI48_RS04630 0.76 +0.6 971,447 - +2.9 971,447 - HGI48_RS04630 0.76 -0.0 971,499 + HGI48_RS04630 0.79 -0.5 971,499 + HGI48_RS04630 0.79 +1.3 971,499 + HGI48_RS04630 0.79 +0.3 971,500 - HGI48_RS04630 0.79 -0.2 971,500 - HGI48_RS04630 0.79 +0.2 971,500 - HGI48_RS04630 0.79 +0.2 971,525 - HGI48_RS04630 0.81 -0.7 971,525 - HGI48_RS04630 0.81 +0.1 971,605 + HGI48_RS04630 0.85 -0.1 971,605 + HGI48_RS04630 0.85 +0.1 971,605 + HGI48_RS04630 0.85 +0.9 971,856 - -0.8 971,895 + -2.4 971,895 + +1.8 971,896 - +1.3 971,909 - +1.0 971,916 + -0.8 971,917 - +1.1 972,014 + +0.2 972,014 + +0.8 972,014 + +1.1 972,014 + -1.7 972,014 + +0.0 972,015 - -1.1 972,063 + -1.0 972,150 + +0.1 972,175 - -1.7 972,210 - -0.6 972,210 - -0.6 972,216 + -0.1 972,216 + -1.6 972,216 + -0.4 972,216 + -1.0 972,217 - -0.4 972,217 - +0.3 972,217 - -0.8 972,217 - +0.1 972,217 - -2.1 972,247 - HGI48_RS04635 0.11 -0.1 972,421 - HGI48_RS04635 0.43 -0.4 972,421 - HGI48_RS04635 0.43 -0.8 972,603 + HGI48_RS04635 0.78 -0.8 972,603 + HGI48_RS04635 0.78 -0.0 972,603 + HGI48_RS04635 0.78 -2.7 972,603 + HGI48_RS04635 0.78 -1.2 972,604 - HGI48_RS04635 0.78 -1.7 972,604 - HGI48_RS04635 0.78 +0.1 972,604 - HGI48_RS04635 0.78 -0.3 972,604 - +1.6 972,610 + HGI48_RS04635 0.79 +0.2 972,713 + +0.6 972,713 + -1.1 972,713 + +0.7 972,713 + -2.2 972,713 + -1.0 972,720 + -0.6 972,720 + +0.4 972,720 + -1.7 972,720 + +0.6 972,720 + -1.4 972,720 + -0.3 972,720 + +1.2 972,721 - -0.1 972,721 - -1.1 972,721 - -0.4 972,721 - -0.6 972,721 - -0.5
Or see this region's nucleotide sequence