Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04480 and HGI48_RS04485 are separated by 131 nucleotides HGI48_RS04485 and HGI48_RS04490 are separated by 13 nucleotides
HGI48_RS04480: HGI48_RS04480 - SAM-dependent methyltransferase TehB, at 937,682 to 938,545
_RS04480
HGI48_RS04485: HGI48_RS04485 - NADH:flavorubredoxin reductase NorW, at 938,677 to 939,834
_RS04485
HGI48_RS04490: HGI48_RS04490 - anaerobic nitric oxide reductase flavorubredoxin, at 939,848 to 941,383
_RS04490
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.777 kb on - strand, within HGI48_RS04480 at 937.801 kb on - strand, within HGI48_RS04480 at 937.801 kb on - strand, within HGI48_RS04480 at 937.803 kb on + strand, within HGI48_RS04480 at 937.804 kb on - strand, within HGI48_RS04480 at 937.894 kb on - strand, within HGI48_RS04480 at 937.894 kb on - strand, within HGI48_RS04480 at 937.921 kb on + strand, within HGI48_RS04480 at 937.922 kb on - strand, within HGI48_RS04480 at 937.967 kb on + strand, within HGI48_RS04480 at 937.967 kb on + strand at 937.967 kb on + strand, within HGI48_RS04480 at 937.967 kb on + strand, within HGI48_RS04480 at 937.979 kb on + strand, within HGI48_RS04480 at 937.979 kb on + strand, within HGI48_RS04480 at 937.979 kb on + strand, within HGI48_RS04480 at 937.992 kb on + strand, within HGI48_RS04480 at 937.993 kb on - strand, within HGI48_RS04480 at 938.071 kb on + strand, within HGI48_RS04480 at 938.071 kb on + strand, within HGI48_RS04480 at 938.072 kb on - strand, within HGI48_RS04480 at 938.072 kb on - strand, within HGI48_RS04480 at 938.139 kb on + strand, within HGI48_RS04480 at 938.150 kb on - strand, within HGI48_RS04480 at 938.196 kb on + strand, within HGI48_RS04480 at 938.196 kb on + strand, within HGI48_RS04480 at 938.196 kb on + strand, within HGI48_RS04480 at 938.197 kb on - strand at 938.197 kb on - strand, within HGI48_RS04480 at 938.253 kb on + strand, within HGI48_RS04480 at 938.254 kb on - strand at 938.254 kb on - strand, within HGI48_RS04480 at 938.254 kb on - strand, within HGI48_RS04480 at 938.254 kb on - strand, within HGI48_RS04480 at 938.256 kb on + strand, within HGI48_RS04480 at 938.256 kb on + strand at 938.256 kb on + strand, within HGI48_RS04480 at 938.256 kb on + strand, within HGI48_RS04480 at 938.257 kb on - strand, within HGI48_RS04480 at 938.257 kb on - strand, within HGI48_RS04480 at 938.257 kb on - strand, within HGI48_RS04480 at 938.257 kb on - strand, within HGI48_RS04480 at 938.274 kb on + strand at 938.274 kb on + strand, within HGI48_RS04480 at 938.274 kb on + strand, within HGI48_RS04480 at 938.274 kb on + strand, within HGI48_RS04480 at 938.275 kb on - strand, within HGI48_RS04480 at 938.341 kb on + strand, within HGI48_RS04480 at 938.341 kb on + strand, within HGI48_RS04480 at 938.341 kb on + strand, within HGI48_RS04480 at 938.342 kb on - strand, within HGI48_RS04480 at 938.342 kb on - strand, within HGI48_RS04480 at 938.342 kb on - strand, within HGI48_RS04480 at 938.342 kb on - strand, within HGI48_RS04480 at 938.342 kb on - strand, within HGI48_RS04480 at 938.343 kb on + strand, within HGI48_RS04480 at 938.343 kb on + strand, within HGI48_RS04480 at 938.343 kb on + strand, within HGI48_RS04480 at 938.344 kb on - strand, within HGI48_RS04480 at 938.344 kb on - strand, within HGI48_RS04480 at 938.344 kb on - strand, within HGI48_RS04480 at 938.402 kb on + strand, within HGI48_RS04480 at 938.403 kb on - strand at 938.438 kb on + strand, within HGI48_RS04480 at 938.524 kb on + strand at 938.524 kb on + strand at 938.525 kb on - strand at 938.525 kb on - strand at 938.526 kb on + strand at 938.527 kb on - strand at 938.546 kb on - strand at 938.566 kb on + strand at 938.567 kb on - strand at 938.568 kb on + strand at 938.569 kb on - strand at 938.569 kb on - strand at 938.569 kb on - strand at 938.574 kb on + strand at 938.575 kb on - strand at 938.575 kb on - strand at 938.575 kb on - strand at 938.579 kb on + strand at 938.579 kb on + strand at 938.579 kb on + strand at 938.579 kb on + strand at 938.580 kb on - strand at 938.583 kb on - strand at 938.583 kb on - strand at 938.612 kb on + strand at 938.616 kb on - strand at 938.616 kb on - strand at 938.618 kb on - strand at 938.678 kb on + strand at 938.678 kb on + strand at 938.678 kb on + strand at 938.678 kb on + strand at 938.678 kb on + strand at 938.678 kb on + strand at 938.679 kb on - strand at 938.679 kb on - strand at 938.679 kb on - strand at 938.679 kb on - strand at 938.827 kb on - strand, within HGI48_RS04485 at 938.868 kb on + strand, within HGI48_RS04485 at 938.928 kb on + strand, within HGI48_RS04485 at 938.928 kb on + strand, within HGI48_RS04485 at 938.929 kb on - strand, within HGI48_RS04485 at 938.929 kb on - strand, within HGI48_RS04485 at 938.937 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.966 kb on - strand, within HGI48_RS04485 at 939.029 kb on + strand, within HGI48_RS04485 at 939.029 kb on + strand, within HGI48_RS04485 at 939.030 kb on - strand, within HGI48_RS04485 at 939.034 kb on - strand, within HGI48_RS04485 at 939.114 kb on + strand, within HGI48_RS04485 at 939.180 kb on + strand, within HGI48_RS04485 at 939.180 kb on + strand, within HGI48_RS04485 at 939.181 kb on - strand, within HGI48_RS04485 at 939.181 kb on - strand, within HGI48_RS04485 at 939.358 kb on - strand, within HGI48_RS04485 at 939.397 kb on + strand, within HGI48_RS04485 at 939.397 kb on + strand, within HGI48_RS04485 at 939.444 kb on - strand, within HGI48_RS04485 at 939.543 kb on - strand, within HGI48_RS04485 at 939.559 kb on + strand, within HGI48_RS04485 at 939.559 kb on + strand, within HGI48_RS04485 at 939.560 kb on - strand, within HGI48_RS04485 at 939.615 kb on + strand, within HGI48_RS04485 at 939.615 kb on + strand at 939.616 kb on - strand at 939.616 kb on - strand, within HGI48_RS04485 at 939.616 kb on - strand at 939.616 kb on - strand, within HGI48_RS04485 at 939.616 kb on - strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.714 kb on - strand, within HGI48_RS04485 at 939.714 kb on - strand, within HGI48_RS04485 at 939.780 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.838 kb on + strand at 939.839 kb on - strand at 939.863 kb on - strand at 939.911 kb on + strand at 939.911 kb on + strand at 939.973 kb on - strand at 940.009 kb on + strand, within HGI48_RS04490 at 940.009 kb on + strand, within HGI48_RS04490 at 940.009 kb on + strand, within HGI48_RS04490 at 940.010 kb on - strand, within HGI48_RS04490 at 940.010 kb on - strand, within HGI48_RS04490 at 940.282 kb on + strand, within HGI48_RS04490 at 940.283 kb on - strand, within HGI48_RS04490 at 940.283 kb on - strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand at 940.348 kb on - strand, within HGI48_RS04490 at 940.436 kb on - strand, within HGI48_RS04490 at 940.521 kb on + strand, within HGI48_RS04490 at 940.522 kb on - strand, within HGI48_RS04490 at 940.522 kb on - strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.638 kb on + strand, within HGI48_RS04490 at 940.660 kb on - strand, within HGI48_RS04490 at 940.669 kb on + strand at 940.670 kb on - strand at 940.670 kb on - strand, within HGI48_RS04490 at 940.803 kb on + strand, within HGI48_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 937,777 - HGI48_RS04480 0.11 +0.9 937,801 - HGI48_RS04480 0.14 -0.4 937,801 - HGI48_RS04480 0.14 +0.6 937,803 + HGI48_RS04480 0.14 -0.4 937,804 - HGI48_RS04480 0.14 -0.5 937,894 - HGI48_RS04480 0.25 -0.7 937,894 - HGI48_RS04480 0.25 +1.2 937,921 + HGI48_RS04480 0.28 +0.8 937,922 - HGI48_RS04480 0.28 +0.6 937,967 + HGI48_RS04480 0.33 +0.2 937,967 + +1.6 937,967 + HGI48_RS04480 0.33 +0.3 937,967 + HGI48_RS04480 0.33 +0.6 937,979 + HGI48_RS04480 0.34 +0.3 937,979 + HGI48_RS04480 0.34 +1.2 937,979 + HGI48_RS04480 0.34 -0.1 937,992 + HGI48_RS04480 0.36 +0.5 937,993 - HGI48_RS04480 0.36 +1.1 938,071 + HGI48_RS04480 0.45 +0.1 938,071 + HGI48_RS04480 0.45 -1.0 938,072 - HGI48_RS04480 0.45 -0.7 938,072 - HGI48_RS04480 0.45 +0.7 938,139 + HGI48_RS04480 0.53 +0.3 938,150 - HGI48_RS04480 0.54 +0.2 938,196 + HGI48_RS04480 0.59 +1.0 938,196 + HGI48_RS04480 0.59 +0.8 938,196 + HGI48_RS04480 0.59 -0.4 938,197 - -1.0 938,197 - HGI48_RS04480 0.60 +0.6 938,253 + HGI48_RS04480 0.66 +0.3 938,254 - +0.6 938,254 - HGI48_RS04480 0.66 +1.0 938,254 - HGI48_RS04480 0.66 +0.6 938,254 - HGI48_RS04480 0.66 -0.8 938,256 + HGI48_RS04480 0.66 +1.2 938,256 + +1.6 938,256 + HGI48_RS04480 0.66 +1.1 938,256 + HGI48_RS04480 0.66 -0.0 938,257 - HGI48_RS04480 0.67 +0.2 938,257 - HGI48_RS04480 0.67 -2.2 938,257 - HGI48_RS04480 0.67 -0.1 938,257 - HGI48_RS04480 0.67 +1.9 938,274 + -0.4 938,274 + HGI48_RS04480 0.69 +0.3 938,274 + HGI48_RS04480 0.69 -1.4 938,274 + HGI48_RS04480 0.69 +0.3 938,275 - HGI48_RS04480 0.69 -0.5 938,341 + HGI48_RS04480 0.76 +1.2 938,341 + HGI48_RS04480 0.76 -0.6 938,341 + HGI48_RS04480 0.76 -0.1 938,342 - HGI48_RS04480 0.76 -0.3 938,342 - HGI48_RS04480 0.76 -0.4 938,342 - HGI48_RS04480 0.76 -1.4 938,342 - HGI48_RS04480 0.76 +0.2 938,342 - HGI48_RS04480 0.76 -0.2 938,343 + HGI48_RS04480 0.77 -0.1 938,343 + HGI48_RS04480 0.77 +0.3 938,343 + HGI48_RS04480 0.77 +2.1 938,344 - HGI48_RS04480 0.77 -0.1 938,344 - HGI48_RS04480 0.77 -0.2 938,344 - HGI48_RS04480 0.77 +0.9 938,402 + HGI48_RS04480 0.83 -1.7 938,403 - +0.6 938,438 + HGI48_RS04480 0.88 -0.1 938,524 + -0.2 938,524 + -0.0 938,525 - +0.2 938,525 - -0.7 938,526 + +0.3 938,527 - +0.1 938,546 - +1.6 938,566 + -1.2 938,567 - +1.5 938,568 + +0.6 938,569 - -0.2 938,569 - +0.6 938,569 - +0.4 938,574 + -0.4 938,575 - +0.9 938,575 - -0.8 938,575 - -2.2 938,579 + -0.4 938,579 + +0.6 938,579 + +0.3 938,579 + +1.0 938,580 - +0.0 938,583 - -1.0 938,583 - +0.0 938,612 + +1.2 938,616 - -0.3 938,616 - +0.6 938,618 - -0.7 938,678 + -1.1 938,678 + -0.6 938,678 + -1.7 938,678 + -1.4 938,678 + +0.2 938,678 + -1.0 938,679 - -0.4 938,679 - +0.4 938,679 - +0.6 938,679 - +0.3 938,827 - HGI48_RS04485 0.13 -1.4 938,868 + HGI48_RS04485 0.16 -1.5 938,928 + HGI48_RS04485 0.22 -0.7 938,928 + HGI48_RS04485 0.22 +0.6 938,929 - HGI48_RS04485 0.22 +0.3 938,929 - HGI48_RS04485 0.22 -2.0 938,937 + HGI48_RS04485 0.22 -2.2 938,940 + HGI48_RS04485 0.23 +1.5 938,940 + HGI48_RS04485 0.23 -1.2 938,940 + HGI48_RS04485 0.23 -0.9 938,940 + HGI48_RS04485 0.23 -0.3 938,940 + -1.0 938,941 - HGI48_RS04485 0.23 +0.2 938,941 - HGI48_RS04485 0.23 -0.2 938,941 - HGI48_RS04485 0.23 +0.2 938,941 - HGI48_RS04485 0.23 -0.8 938,941 - HGI48_RS04485 0.23 +0.5 938,966 - HGI48_RS04485 0.25 +0.0 939,029 + HGI48_RS04485 0.30 +0.6 939,029 + HGI48_RS04485 0.30 +0.3 939,030 - HGI48_RS04485 0.30 -0.5 939,034 - HGI48_RS04485 0.31 -1.0 939,114 + HGI48_RS04485 0.38 -0.7 939,180 + HGI48_RS04485 0.43 -1.3 939,180 + HGI48_RS04485 0.43 +0.6 939,181 - HGI48_RS04485 0.44 -2.0 939,181 - HGI48_RS04485 0.44 +0.2 939,358 - HGI48_RS04485 0.59 -0.5 939,397 + HGI48_RS04485 0.62 -0.7 939,397 + HGI48_RS04485 0.62 -0.6 939,444 - HGI48_RS04485 0.66 +0.2 939,543 - HGI48_RS04485 0.75 -0.4 939,559 + HGI48_RS04485 0.76 -1.2 939,559 + HGI48_RS04485 0.76 +0.0 939,560 - HGI48_RS04485 0.76 +0.1 939,615 + HGI48_RS04485 0.81 -1.2 939,615 + +0.0 939,616 - +1.0 939,616 - HGI48_RS04485 0.81 +1.6 939,616 - +1.6 939,616 - HGI48_RS04485 0.81 -1.1 939,616 - HGI48_RS04485 0.81 -1.4 939,713 + HGI48_RS04485 0.89 -0.8 939,713 + HGI48_RS04485 0.89 -0.6 939,713 + HGI48_RS04485 0.89 -3.1 939,714 - HGI48_RS04485 0.90 -1.1 939,714 - HGI48_RS04485 0.90 -1.0 939,780 + +0.3 939,834 + -0.6 939,834 + -0.8 939,834 + +0.0 939,834 + -1.0 939,835 - +0.0 939,835 - +0.1 939,835 - -1.3 939,835 - -0.8 939,835 - -0.4 939,835 - -0.8 939,835 - -0.4 939,835 - +2.7 939,835 - +0.6 939,835 - +0.5 939,835 - -0.4 939,838 + -0.2 939,839 - -1.6 939,863 - +0.4 939,911 + -0.3 939,911 + +0.3 939,973 - +0.8 940,009 + HGI48_RS04490 0.10 +1.1 940,009 + HGI48_RS04490 0.10 -0.7 940,009 + HGI48_RS04490 0.10 -0.6 940,010 - HGI48_RS04490 0.11 -0.2 940,010 - HGI48_RS04490 0.11 +0.0 940,282 + HGI48_RS04490 0.28 -1.4 940,283 - HGI48_RS04490 0.28 -1.7 940,283 - HGI48_RS04490 0.28 -0.4 940,347 + HGI48_RS04490 0.32 +0.5 940,347 + HGI48_RS04490 0.32 +0.1 940,347 + HGI48_RS04490 0.32 +0.1 940,347 + -0.4 940,348 - HGI48_RS04490 0.33 -0.6 940,436 - HGI48_RS04490 0.38 -1.4 940,521 + HGI48_RS04490 0.44 -0.6 940,522 - HGI48_RS04490 0.44 +0.1 940,522 - HGI48_RS04490 0.44 -0.0 940,611 + HGI48_RS04490 0.50 -1.8 940,611 + HGI48_RS04490 0.50 +1.4 940,612 - HGI48_RS04490 0.50 -1.1 940,612 - HGI48_RS04490 0.50 -0.2 940,638 + HGI48_RS04490 0.51 -0.1 940,660 - HGI48_RS04490 0.53 -1.1 940,669 + +2.2 940,670 - -1.0 940,670 - HGI48_RS04490 0.54 -0.4 940,803 + HGI48_RS04490 0.62 -0.3
Or see this region's nucleotide sequence