Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04380 and HGI48_RS04385 are separated by 35 nucleotides HGI48_RS04385 and HGI48_RS04390 are separated by 15 nucleotides HGI48_RS04390 and HGI48_RS04395 are separated by 241 nucleotides
HGI48_RS04380: HGI48_RS04380 - GNAT family N-acetyltransferase, at 918,053 to 918,466
_RS04380
HGI48_RS04385: HGI48_RS04385 - LuxR family transcriptional regulator, at 918,502 to 919,191
_RS04385
HGI48_RS04390: HGI48_RS04390 - cytosine permease, at 919,207 to 920,502
_RS04390
HGI48_RS04395: HGI48_RS04395 - Dyp-type peroxidase, at 920,744 to 921,643
_RS04395
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 918.231 kb on + strand, within HGI48_RS04380 at 918.232 kb on - strand, within HGI48_RS04380 at 918.242 kb on + strand, within HGI48_RS04380 at 918.242 kb on + strand, within HGI48_RS04380 at 918.243 kb on - strand at 918.335 kb on - strand, within HGI48_RS04380 at 918.335 kb on - strand, within HGI48_RS04380 at 918.341 kb on + strand, within HGI48_RS04380 at 918.341 kb on + strand, within HGI48_RS04380 at 918.342 kb on - strand, within HGI48_RS04380 at 918.342 kb on - strand, within HGI48_RS04380 at 918.342 kb on - strand, within HGI48_RS04380 at 918.350 kb on - strand, within HGI48_RS04380 at 918.350 kb on - strand, within HGI48_RS04380 at 918.356 kb on - strand, within HGI48_RS04380 at 918.401 kb on + strand, within HGI48_RS04380 at 918.420 kb on - strand, within HGI48_RS04380 at 918.431 kb on + strand at 918.432 kb on - strand at 918.468 kb on - strand at 918.495 kb on + strand at 918.496 kb on - strand at 918.534 kb on + strand at 918.547 kb on - strand at 918.610 kb on + strand, within HGI48_RS04385 at 918.610 kb on + strand, within HGI48_RS04385 at 918.642 kb on + strand, within HGI48_RS04385 at 918.643 kb on - strand, within HGI48_RS04385 at 918.888 kb on + strand at 919.070 kb on - strand, within HGI48_RS04385 at 919.078 kb on + strand at 919.203 kb on + strand at 919.203 kb on + strand at 919.204 kb on - strand at 919.293 kb on + strand at 919.293 kb on + strand at 919.317 kb on + strand at 919.317 kb on + strand at 919.317 kb on + strand at 919.318 kb on - strand at 919.318 kb on - strand at 919.421 kb on - strand, within HGI48_RS04390 at 919.510 kb on - strand at 919.698 kb on + strand, within HGI48_RS04390 at 919.699 kb on - strand, within HGI48_RS04390 at 919.717 kb on - strand, within HGI48_RS04390 at 919.809 kb on + strand, within HGI48_RS04390 at 919.809 kb on + strand, within HGI48_RS04390 at 919.827 kb on + strand, within HGI48_RS04390 at 919.827 kb on + strand, within HGI48_RS04390 at 919.828 kb on - strand, within HGI48_RS04390 at 919.901 kb on + strand, within HGI48_RS04390 at 919.901 kb on + strand, within HGI48_RS04390 at 919.927 kb on - strand, within HGI48_RS04390 at 919.927 kb on - strand, within HGI48_RS04390 at 919.986 kb on + strand, within HGI48_RS04390 at 919.986 kb on + strand, within HGI48_RS04390 at 919.987 kb on - strand, within HGI48_RS04390 at 919.987 kb on - strand, within HGI48_RS04390 at 919.987 kb on - strand, within HGI48_RS04390 at 920.023 kb on - strand, within HGI48_RS04390 at 920.059 kb on - strand, within HGI48_RS04390 at 920.059 kb on - strand, within HGI48_RS04390 at 920.059 kb on - strand, within HGI48_RS04390 at 920.065 kb on + strand, within HGI48_RS04390 at 920.065 kb on + strand, within HGI48_RS04390 at 920.066 kb on - strand, within HGI48_RS04390 at 920.085 kb on - strand, within HGI48_RS04390 at 920.125 kb on + strand, within HGI48_RS04390 at 920.125 kb on + strand, within HGI48_RS04390 at 920.125 kb on + strand, within HGI48_RS04390 at 920.126 kb on - strand, within HGI48_RS04390 at 920.126 kb on - strand, within HGI48_RS04390 at 920.126 kb on - strand at 920.260 kb on + strand, within HGI48_RS04390 at 920.260 kb on + strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.265 kb on + strand, within HGI48_RS04390 at 920.265 kb on + strand, within HGI48_RS04390 at 920.266 kb on - strand, within HGI48_RS04390 at 920.266 kb on - strand, within HGI48_RS04390 at 920.334 kb on + strand at 920.341 kb on + strand, within HGI48_RS04390 at 920.342 kb on - strand, within HGI48_RS04390 at 920.450 kb on - strand at 920.458 kb on - strand at 920.458 kb on - strand at 920.552 kb on + strand at 920.553 kb on - strand at 920.553 kb on - strand at 920.611 kb on - strand at 920.611 kb on - strand at 920.611 kb on - strand at 920.656 kb on + strand at 920.666 kb on + strand at 920.667 kb on - strand at 920.667 kb on - strand at 920.667 kb on - strand at 920.667 kb on - strand at 920.680 kb on + strand at 920.681 kb on - strand at 920.726 kb on - strand at 920.741 kb on + strand at 920.741 kb on + strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.811 kb on + strand at 920.812 kb on - strand at 920.845 kb on + strand at 920.846 kb on - strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand at 921.251 kb on + strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.453 kb on - strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.494 kb on + strand, within HGI48_RS04395 at 921.495 kb on - strand, within HGI48_RS04395
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 918,231 + HGI48_RS04380 0.43 -1.0 918,232 - HGI48_RS04380 0.43 -0.7 918,242 + HGI48_RS04380 0.46 -1.0 918,242 + HGI48_RS04380 0.46 -1.4 918,243 - +1.0 918,335 - HGI48_RS04380 0.68 -0.6 918,335 - HGI48_RS04380 0.68 -0.4 918,341 + HGI48_RS04380 0.70 -0.2 918,341 + HGI48_RS04380 0.70 +0.3 918,342 - HGI48_RS04380 0.70 -0.7 918,342 - HGI48_RS04380 0.70 -1.0 918,342 - HGI48_RS04380 0.70 +0.1 918,350 - HGI48_RS04380 0.72 +0.6 918,350 - HGI48_RS04380 0.72 -0.2 918,356 - HGI48_RS04380 0.73 +0.2 918,401 + HGI48_RS04380 0.84 -1.2 918,420 - HGI48_RS04380 0.89 +1.6 918,431 + -0.8 918,432 - -0.4 918,468 - +1.4 918,495 + +1.6 918,496 - +0.1 918,534 + -1.0 918,547 - +1.0 918,610 + HGI48_RS04385 0.16 +1.2 918,610 + HGI48_RS04385 0.16 -2.2 918,642 + HGI48_RS04385 0.20 -0.6 918,643 - HGI48_RS04385 0.20 +1.7 918,888 + +1.2 919,070 - HGI48_RS04385 0.82 -0.4 919,078 + +1.2 919,203 + -0.6 919,203 + -0.2 919,204 - +0.2 919,293 + -0.4 919,293 + -0.6 919,317 + +0.6 919,317 + +0.5 919,317 + -0.9 919,318 - +0.5 919,318 - +0.3 919,421 - HGI48_RS04390 0.17 -0.2 919,510 - +3.2 919,698 + HGI48_RS04390 0.38 -0.1 919,699 - HGI48_RS04390 0.38 -0.7 919,717 - HGI48_RS04390 0.39 -1.4 919,809 + HGI48_RS04390 0.46 +0.6 919,809 + HGI48_RS04390 0.46 +0.2 919,827 + HGI48_RS04390 0.48 +0.4 919,827 + HGI48_RS04390 0.48 -0.4 919,828 - HGI48_RS04390 0.48 -0.1 919,901 + HGI48_RS04390 0.54 -0.6 919,901 + HGI48_RS04390 0.54 +0.6 919,927 - HGI48_RS04390 0.56 -1.0 919,927 - HGI48_RS04390 0.56 +0.4 919,986 + HGI48_RS04390 0.60 -0.1 919,986 + HGI48_RS04390 0.60 -0.1 919,987 - HGI48_RS04390 0.60 -0.2 919,987 - HGI48_RS04390 0.60 -1.4 919,987 - HGI48_RS04390 0.60 -1.0 920,023 - HGI48_RS04390 0.63 -1.0 920,059 - HGI48_RS04390 0.66 -1.2 920,059 - HGI48_RS04390 0.66 -1.0 920,059 - HGI48_RS04390 0.66 +0.8 920,065 + HGI48_RS04390 0.66 -0.4 920,065 + HGI48_RS04390 0.66 +0.4 920,066 - HGI48_RS04390 0.66 -0.7 920,085 - HGI48_RS04390 0.68 -1.4 920,125 + HGI48_RS04390 0.71 -1.4 920,125 + HGI48_RS04390 0.71 -0.2 920,125 + HGI48_RS04390 0.71 -1.5 920,126 - HGI48_RS04390 0.71 -0.9 920,126 - HGI48_RS04390 0.71 +0.2 920,126 - +1.0 920,260 + HGI48_RS04390 0.81 -0.2 920,260 + HGI48_RS04390 0.81 -0.7 920,261 - HGI48_RS04390 0.81 +0.3 920,261 - HGI48_RS04390 0.81 -2.2 920,261 - HGI48_RS04390 0.81 -1.1 920,261 - HGI48_RS04390 0.81 +1.9 920,265 + HGI48_RS04390 0.82 -0.7 920,265 + HGI48_RS04390 0.82 -0.4 920,266 - HGI48_RS04390 0.82 -1.2 920,266 - HGI48_RS04390 0.82 +0.8 920,334 + +1.4 920,341 + HGI48_RS04390 0.88 +0.7 920,342 - HGI48_RS04390 0.88 +0.4 920,450 - +0.3 920,458 - -0.5 920,458 - +2.0 920,552 + -0.0 920,553 - +1.3 920,553 - +1.3 920,611 - +0.2 920,611 - +0.2 920,611 - -1.1 920,656 + +0.4 920,666 + +0.2 920,667 - -2.0 920,667 - -0.4 920,667 - +0.4 920,667 - -1.0 920,680 + -0.3 920,681 - -0.7 920,726 - -1.0 920,741 + +0.1 920,741 + -1.0 920,742 - -1.0 920,742 - -1.7 920,742 - -1.7 920,742 - -1.4 920,811 + -1.4 920,812 - +0.6 920,845 + +0.6 920,846 - HGI48_RS04395 0.11 +0.0 921,251 + HGI48_RS04395 0.56 -2.5 921,251 + HGI48_RS04395 0.56 -3.4 921,251 + HGI48_RS04395 0.56 -0.5 921,251 + HGI48_RS04395 0.56 -2.0 921,251 + +1.0 921,251 + HGI48_RS04395 0.56 -2.1 921,252 - HGI48_RS04395 0.56 -1.8 921,252 - HGI48_RS04395 0.56 -2.0 921,252 - HGI48_RS04395 0.56 -2.0 921,252 - -1.0 921,252 - HGI48_RS04395 0.56 -2.0 921,252 - +0.0 921,252 - HGI48_RS04395 0.56 +0.4 921,252 - HGI48_RS04395 0.56 -0.5 921,453 - HGI48_RS04395 0.79 -1.5 921,482 + HGI48_RS04395 0.82 -3.2 921,482 + HGI48_RS04395 0.82 -1.4 921,494 + HGI48_RS04395 0.83 -1.4 921,495 - HGI48_RS04395 0.83 +0.9
Or see this region's nucleotide sequence