Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04230 and HGI48_RS04235 are separated by 878 nucleotides HGI48_RS04235 and HGI48_RS04240 are separated by 919 nucleotides
HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261
_RS04230
HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343
_RS04235
HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640
_RS04240
Position (kb) 892
893 Strain fitness (log2 ratio) -1
0
1
2 at 891.144 kb on + strand at 891.144 kb on + strand at 891.145 kb on - strand at 891.171 kb on + strand at 891.214 kb on + strand at 891.215 kb on - strand at 891.215 kb on - strand at 891.656 kb on + strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.668 kb on + strand at 891.685 kb on + strand at 891.686 kb on - strand at 891.686 kb on - strand at 891.729 kb on - strand at 891.756 kb on + strand at 891.858 kb on + strand at 891.859 kb on - strand at 891.888 kb on + strand at 891.902 kb on - strand at 891.911 kb on + strand at 891.939 kb on - strand at 892.108 kb on + strand at 892.108 kb on + strand at 892.108 kb on + strand at 892.352 kb on - strand at 892.506 kb on - strand at 892.793 kb on + strand at 892.810 kb on + strand at 892.868 kb on + strand at 892.919 kb on - strand at 893.001 kb on + strand at 893.138 kb on - strand at 893.242 kb on + strand at 893.310 kb on + strand, within HGI48_RS04240 at 893.313 kb on - strand, within HGI48_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 891,144 + -0.1 891,144 + +0.2 891,145 - +0.2 891,171 + -0.4 891,214 + +0.6 891,215 - +0.4 891,215 - -0.1 891,656 + -0.2 891,657 - +0.5 891,657 - +0.9 891,657 - -0.2 891,657 - +0.6 891,668 + -0.6 891,685 + -0.6 891,686 - -0.7 891,686 - -0.4 891,729 - -0.3 891,756 + +1.0 891,858 + +2.0 891,859 - -0.6 891,888 + +1.6 891,902 - +1.0 891,911 + -0.2 891,939 - +0.3 892,108 + +2.7 892,108 + +0.2 892,108 + -0.8 892,352 - +0.6 892,506 - -0.2 892,793 + -0.4 892,810 + -0.9 892,868 + +0.6 892,919 - -1.0 893,001 + +1.0 893,138 - -0.4 893,242 + +0.5 893,310 + HGI48_RS04240 0.12 +0.6 893,313 - HGI48_RS04240 0.13 +0.6
Or see this region's nucleotide sequence