Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04200 and HGI48_RS04205 are separated by 86 nucleotides HGI48_RS04205 and HGI48_RS04210 are separated by 452 nucleotides HGI48_RS04210 and HGI48_RS04215 overlap by 17 nucleotides
HGI48_RS04200: HGI48_RS04200 - IS21 family transposase, at 885,007 to 886,030
_RS04200
HGI48_RS04205: HGI48_RS04205 - integrase arm-type DNA-binding domain-containing protein, at 886,117 to 886,315
_RS04205
HGI48_RS04210: HGI48_RS04210 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 886,768 to 887,313
_RS04210
HGI48_RS04215: HGI48_RS04215 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 887,297 to 888,214
_RS04215
Position (kb) 886
887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 885.808 kb on + strand, within HGI48_RS04200 at 885.811 kb on - strand, within HGI48_RS04200 at 886.118 kb on + strand at 886.126 kb on + strand at 886.137 kb on + strand, within HGI48_RS04205 at 886.138 kb on - strand, within HGI48_RS04205 at 886.149 kb on + strand, within HGI48_RS04205 at 886.153 kb on + strand, within HGI48_RS04205 at 886.153 kb on + strand, within HGI48_RS04205 at 886.166 kb on + strand, within HGI48_RS04205 at 886.176 kb on - strand, within HGI48_RS04205 at 886.195 kb on + strand, within HGI48_RS04205 at 886.196 kb on - strand, within HGI48_RS04205 at 886.270 kb on + strand, within HGI48_RS04205 at 886.271 kb on - strand, within HGI48_RS04205 at 886.291 kb on + strand, within HGI48_RS04205 at 886.318 kb on + strand at 886.319 kb on - strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.380 kb on + strand at 886.380 kb on + strand at 886.401 kb on + strand at 886.402 kb on - strand at 886.402 kb on - strand at 886.402 kb on - strand at 886.404 kb on - strand at 886.409 kb on + strand at 886.409 kb on + strand at 886.443 kb on + strand at 886.444 kb on - strand at 886.444 kb on - strand at 886.444 kb on - strand at 886.447 kb on - strand at 886.529 kb on - strand at 886.553 kb on + strand at 886.554 kb on - strand at 886.555 kb on + strand at 886.559 kb on + strand at 886.565 kb on + strand at 886.566 kb on - strand at 886.567 kb on + strand at 886.715 kb on + strand at 886.724 kb on - strand at 886.724 kb on - strand at 886.724 kb on - strand at 886.738 kb on + strand at 886.742 kb on + strand at 886.743 kb on - strand at 886.882 kb on - strand at 886.904 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.943 kb on - strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.951 kb on - strand, within HGI48_RS04210 at 886.951 kb on - strand, within HGI48_RS04210 at 886.976 kb on - strand, within HGI48_RS04210 at 886.977 kb on + strand at 886.977 kb on + strand, within HGI48_RS04210 at 886.977 kb on + strand, within HGI48_RS04210 at 886.978 kb on - strand, within HGI48_RS04210 at 887.017 kb on + strand, within HGI48_RS04210 at 887.017 kb on + strand at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.023 kb on + strand, within HGI48_RS04210 at 887.023 kb on + strand at 887.024 kb on - strand, within HGI48_RS04210 at 887.024 kb on - strand, within HGI48_RS04210 at 887.121 kb on + strand, within HGI48_RS04210 at 887.122 kb on - strand, within HGI48_RS04210 at 887.149 kb on - strand at 887.154 kb on + strand, within HGI48_RS04210 at 887.188 kb on - strand, within HGI48_RS04210 at 887.188 kb on - strand, within HGI48_RS04210 at 887.188 kb on - strand, within HGI48_RS04210 at 887.191 kb on + strand, within HGI48_RS04210 at 887.192 kb on - strand, within HGI48_RS04210 at 887.224 kb on - strand at 887.246 kb on + strand, within HGI48_RS04210 at 887.262 kb on + strand at 887.291 kb on + strand at 887.291 kb on + strand at 887.291 kb on + strand at 887.292 kb on - strand at 887.292 kb on - strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.396 kb on + strand, within HGI48_RS04215 at 887.419 kb on + strand, within HGI48_RS04215 at 887.443 kb on + strand, within HGI48_RS04215 at 887.443 kb on + strand, within HGI48_RS04215 at 887.443 kb on + strand, within HGI48_RS04215 at 887.444 kb on - strand, within HGI48_RS04215 at 887.444 kb on - strand, within HGI48_RS04215 at 887.563 kb on + strand, within HGI48_RS04215 at 887.573 kb on + strand, within HGI48_RS04215 at 887.574 kb on - strand, within HGI48_RS04215 at 887.574 kb on - strand, within HGI48_RS04215 at 887.574 kb on - strand, within HGI48_RS04215 at 887.578 kb on - strand, within HGI48_RS04215 at 887.607 kb on + strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.626 kb on - strand, within HGI48_RS04215 at 887.626 kb on - strand, within HGI48_RS04215 at 887.626 kb on - strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.663 kb on - strand at 887.680 kb on + strand, within HGI48_RS04215 at 887.705 kb on - strand, within HGI48_RS04215 at 887.705 kb on - strand, within HGI48_RS04215 at 887.750 kb on + strand, within HGI48_RS04215 at 887.751 kb on - strand, within HGI48_RS04215 at 887.772 kb on + strand, within HGI48_RS04215 at 887.772 kb on + strand, within HGI48_RS04215 at 887.772 kb on + strand, within HGI48_RS04215 at 887.773 kb on - strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.784 kb on - strand at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.821 kb on + strand, within HGI48_RS04215 at 887.822 kb on - strand, within HGI48_RS04215 at 887.822 kb on - strand, within HGI48_RS04215 at 887.822 kb on - strand, within HGI48_RS04215 at 887.844 kb on + strand, within HGI48_RS04215 at 887.845 kb on - strand, within HGI48_RS04215 at 887.885 kb on + strand, within HGI48_RS04215 at 887.886 kb on - strand at 887.886 kb on - strand, within HGI48_RS04215 at 887.886 kb on - strand, within HGI48_RS04215 at 887.888 kb on - strand, within HGI48_RS04215 at 887.914 kb on - strand, within HGI48_RS04215 at 887.942 kb on + strand at 887.943 kb on - strand, within HGI48_RS04215 at 887.943 kb on - strand, within HGI48_RS04215 at 887.993 kb on + strand, within HGI48_RS04215 at 887.994 kb on - strand, within HGI48_RS04215 at 887.994 kb on - strand, within HGI48_RS04215 at 887.994 kb on - strand, within HGI48_RS04215 at 888.004 kb on - strand, within HGI48_RS04215 at 888.128 kb on + strand at 888.166 kb on - strand at 888.166 kb on - strand at 888.177 kb on + strand at 888.177 kb on + strand at 888.231 kb on - strand at 888.262 kb on + strand at 888.262 kb on + strand at 888.263 kb on - strand at 888.304 kb on - strand at 888.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 885,808 + HGI48_RS04200 0.78 +1.1 885,811 - HGI48_RS04200 0.79 +0.3 886,118 + -2.1 886,126 + +0.2 886,137 + HGI48_RS04205 0.10 -1.4 886,138 - HGI48_RS04205 0.11 -0.5 886,149 + HGI48_RS04205 0.16 -0.8 886,153 + HGI48_RS04205 0.18 +0.3 886,153 + HGI48_RS04205 0.18 -1.7 886,166 + HGI48_RS04205 0.25 +1.0 886,176 - HGI48_RS04205 0.30 -0.1 886,195 + HGI48_RS04205 0.39 -1.2 886,196 - HGI48_RS04205 0.40 -0.2 886,270 + HGI48_RS04205 0.77 +0.6 886,271 - HGI48_RS04205 0.77 -0.5 886,291 + HGI48_RS04205 0.87 -0.7 886,318 + +0.6 886,319 - +0.1 886,373 + -0.3 886,373 + +0.0 886,380 + -0.1 886,380 + -1.0 886,401 + +1.4 886,402 - -2.4 886,402 - -0.7 886,402 - -0.5 886,404 - -0.2 886,409 + -0.1 886,409 + +0.3 886,443 + +0.2 886,444 - -0.2 886,444 - -0.4 886,444 - +1.0 886,447 - -1.4 886,529 - -2.1 886,553 + -0.4 886,554 - +0.1 886,555 + -1.4 886,559 + -2.2 886,565 + -0.4 886,566 - -2.8 886,567 + -0.4 886,715 + -1.0 886,724 - -0.1 886,724 - +0.2 886,724 - +0.5 886,738 + -1.7 886,742 + -0.5 886,743 - -0.6 886,882 - +2.2 886,904 + HGI48_RS04210 0.25 +0.6 886,942 + HGI48_RS04210 0.32 -0.4 886,942 + HGI48_RS04210 0.32 -0.5 886,942 + HGI48_RS04210 0.32 -2.0 886,943 - HGI48_RS04210 0.32 +0.6 886,948 + HGI48_RS04210 0.33 +0.0 886,948 + HGI48_RS04210 0.33 -0.0 886,948 + HGI48_RS04210 0.33 -1.4 886,948 + HGI48_RS04210 0.33 +0.5 886,948 + HGI48_RS04210 0.33 -2.0 886,948 + HGI48_RS04210 0.33 +0.6 886,949 - HGI48_RS04210 0.33 -0.7 886,949 - HGI48_RS04210 0.33 -1.0 886,949 - HGI48_RS04210 0.33 +0.5 886,951 - HGI48_RS04210 0.34 -0.4 886,951 - HGI48_RS04210 0.34 -2.2 886,976 - HGI48_RS04210 0.38 +0.3 886,977 + +1.6 886,977 + HGI48_RS04210 0.38 +1.0 886,977 + HGI48_RS04210 0.38 +0.3 886,978 - HGI48_RS04210 0.38 +0.8 887,017 + HGI48_RS04210 0.46 -0.0 887,017 + +1.4 887,018 - HGI48_RS04210 0.46 +0.6 887,018 - HGI48_RS04210 0.46 +0.2 887,018 - HGI48_RS04210 0.46 -2.1 887,018 - HGI48_RS04210 0.46 -1.0 887,018 - HGI48_RS04210 0.46 -1.1 887,019 + HGI48_RS04210 0.46 -1.2 887,019 + HGI48_RS04210 0.46 +0.2 887,019 + HGI48_RS04210 0.46 -0.8 887,019 + HGI48_RS04210 0.46 -0.1 887,019 + +0.0 887,019 + HGI48_RS04210 0.46 -0.5 887,019 + HGI48_RS04210 0.46 -2.0 887,019 + HGI48_RS04210 0.46 +1.4 887,019 + HGI48_RS04210 0.46 +0.6 887,020 - HGI48_RS04210 0.46 -0.6 887,020 - HGI48_RS04210 0.46 +0.5 887,020 - HGI48_RS04210 0.46 +1.4 887,020 - HGI48_RS04210 0.46 -0.2 887,020 - HGI48_RS04210 0.46 +0.0 887,020 - HGI48_RS04210 0.46 -0.2 887,023 + HGI48_RS04210 0.47 -0.7 887,023 + -0.4 887,024 - HGI48_RS04210 0.47 -1.1 887,024 - HGI48_RS04210 0.47 +0.6 887,121 + HGI48_RS04210 0.65 -0.7 887,122 - HGI48_RS04210 0.65 +0.8 887,149 - +1.4 887,154 + HGI48_RS04210 0.71 -2.7 887,188 - HGI48_RS04210 0.77 -0.6 887,188 - HGI48_RS04210 0.77 +0.2 887,188 - HGI48_RS04210 0.77 +0.0 887,191 + HGI48_RS04210 0.77 -0.6 887,192 - HGI48_RS04210 0.78 +0.3 887,224 - -1.0 887,246 + HGI48_RS04210 0.88 +0.4 887,262 + -1.4 887,291 + +0.0 887,291 + -2.0 887,291 + -0.6 887,292 - -2.0 887,292 - -0.8 887,293 + +0.0 887,293 + -1.2 887,293 + -0.7 887,293 + -1.0 887,293 + +0.3 887,293 + +0.6 887,396 + HGI48_RS04215 0.11 -0.4 887,419 + HGI48_RS04215 0.13 -0.1 887,443 + HGI48_RS04215 0.16 +0.2 887,443 + HGI48_RS04215 0.16 -0.0 887,443 + HGI48_RS04215 0.16 -1.1 887,444 - HGI48_RS04215 0.16 -0.4 887,444 - HGI48_RS04215 0.16 -0.2 887,563 + HGI48_RS04215 0.29 -0.0 887,573 + HGI48_RS04215 0.30 +0.6 887,574 - HGI48_RS04215 0.30 -0.4 887,574 - HGI48_RS04215 0.30 +0.8 887,574 - HGI48_RS04215 0.30 +0.2 887,578 - HGI48_RS04215 0.31 -2.0 887,607 + HGI48_RS04215 0.34 -2.2 887,608 - HGI48_RS04215 0.34 +0.5 887,608 - HGI48_RS04215 0.34 -0.7 887,608 - HGI48_RS04215 0.34 -0.5 887,608 - HGI48_RS04215 0.34 -1.5 887,626 - HGI48_RS04215 0.36 +0.6 887,626 - HGI48_RS04215 0.36 +0.2 887,626 - HGI48_RS04215 0.36 -0.8 887,662 + HGI48_RS04215 0.40 -2.7 887,662 + HGI48_RS04215 0.40 -1.2 887,662 + HGI48_RS04215 0.40 +0.0 887,662 + HGI48_RS04215 0.40 +1.0 887,663 - +0.0 887,680 + HGI48_RS04215 0.42 -1.0 887,705 - HGI48_RS04215 0.44 +0.3 887,705 - HGI48_RS04215 0.44 +1.0 887,750 + HGI48_RS04215 0.49 +0.0 887,751 - HGI48_RS04215 0.49 +0.3 887,772 + HGI48_RS04215 0.52 -2.5 887,772 + HGI48_RS04215 0.52 +1.0 887,772 + HGI48_RS04215 0.52 -1.0 887,773 - HGI48_RS04215 0.52 -0.2 887,783 + HGI48_RS04215 0.53 -2.5 887,783 + -0.4 887,783 + HGI48_RS04215 0.53 -1.4 887,783 + +1.9 887,783 + HGI48_RS04215 0.53 +0.9 887,783 + HGI48_RS04215 0.53 +0.3 887,783 + HGI48_RS04215 0.53 +0.6 887,783 + HGI48_RS04215 0.53 -0.9 887,784 - +0.0 887,784 - HGI48_RS04215 0.53 -1.4 887,784 - HGI48_RS04215 0.53 -1.1 887,784 - HGI48_RS04215 0.53 -0.1 887,784 - HGI48_RS04215 0.53 -0.4 887,784 - HGI48_RS04215 0.53 -1.7 887,821 + HGI48_RS04215 0.57 -1.4 887,822 - HGI48_RS04215 0.57 -0.8 887,822 - HGI48_RS04215 0.57 +0.6 887,822 - HGI48_RS04215 0.57 -0.4 887,844 + HGI48_RS04215 0.60 +0.6 887,845 - HGI48_RS04215 0.60 +0.4 887,885 + HGI48_RS04215 0.64 -0.1 887,886 - +1.4 887,886 - HGI48_RS04215 0.64 -0.4 887,886 - HGI48_RS04215 0.64 +0.2 887,888 - HGI48_RS04215 0.64 -0.1 887,914 - HGI48_RS04215 0.67 -2.2 887,942 + +0.0 887,943 - HGI48_RS04215 0.70 -0.2 887,943 - HGI48_RS04215 0.70 -0.9 887,993 + HGI48_RS04215 0.76 -1.0 887,994 - HGI48_RS04215 0.76 +1.3 887,994 - HGI48_RS04215 0.76 +1.7 887,994 - HGI48_RS04215 0.76 +1.1 888,004 - HGI48_RS04215 0.77 +0.4 888,128 + -0.4 888,166 - -0.0 888,166 - -1.7 888,177 + -1.4 888,177 + -0.6 888,231 - +0.3 888,262 + -1.4 888,262 + -2.4 888,263 - +0.6 888,304 - -1.5 888,309 - +1.0
Or see this region's nucleotide sequence