Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04190 and HGI48_RS04195 are separated by 67 nucleotides HGI48_RS04195 and HGI48_RS04200 overlap by 4 nucleotides HGI48_RS04200 and HGI48_RS04205 are separated by 86 nucleotides HGI48_RS04205 and HGI48_RS04210 are separated by 452 nucleotides
HGI48_RS04190: HGI48_RS04190 - transposase, at 883,786 to 884,160
_RS04190
HGI48_RS04195: HGI48_RS04195 - AAA family ATPase, at 884,228 to 885,010
_RS04195
HGI48_RS04200: HGI48_RS04200 - IS21 family transposase, at 885,007 to 886,030
_RS04200
HGI48_RS04205: HGI48_RS04205 - integrase arm-type DNA-binding domain-containing protein, at 886,117 to 886,315
_RS04205
HGI48_RS04210: HGI48_RS04210 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 886,768 to 887,313
_RS04210
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 884.022 kb on - strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.026 kb on - strand, within HGI48_RS04190 at 884.133 kb on + strand at 884.133 kb on + strand at 884.137 kb on + strand at 884.137 kb on + strand at 884.190 kb on - strand at 885.808 kb on + strand, within HGI48_RS04200 at 885.811 kb on - strand, within HGI48_RS04200 at 886.118 kb on + strand at 886.126 kb on + strand at 886.137 kb on + strand, within HGI48_RS04205 at 886.138 kb on - strand, within HGI48_RS04205 at 886.149 kb on + strand, within HGI48_RS04205 at 886.153 kb on + strand, within HGI48_RS04205 at 886.153 kb on + strand, within HGI48_RS04205 at 886.166 kb on + strand, within HGI48_RS04205 at 886.176 kb on - strand, within HGI48_RS04205 at 886.195 kb on + strand, within HGI48_RS04205 at 886.196 kb on - strand, within HGI48_RS04205 at 886.270 kb on + strand, within HGI48_RS04205 at 886.271 kb on - strand, within HGI48_RS04205 at 886.291 kb on + strand, within HGI48_RS04205 at 886.318 kb on + strand at 886.319 kb on - strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.380 kb on + strand at 886.380 kb on + strand at 886.401 kb on + strand at 886.402 kb on - strand at 886.402 kb on - strand at 886.402 kb on - strand at 886.404 kb on - strand at 886.409 kb on + strand at 886.409 kb on + strand at 886.443 kb on + strand at 886.444 kb on - strand at 886.444 kb on - strand at 886.444 kb on - strand at 886.447 kb on - strand at 886.529 kb on - strand at 886.553 kb on + strand at 886.554 kb on - strand at 886.555 kb on + strand at 886.559 kb on + strand at 886.565 kb on + strand at 886.566 kb on - strand at 886.567 kb on + strand at 886.715 kb on + strand at 886.724 kb on - strand at 886.724 kb on - strand at 886.724 kb on - strand at 886.738 kb on + strand at 886.742 kb on + strand at 886.743 kb on - strand at 886.882 kb on - strand at 886.904 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.943 kb on - strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.951 kb on - strand, within HGI48_RS04210 at 886.951 kb on - strand, within HGI48_RS04210 at 886.976 kb on - strand, within HGI48_RS04210 at 886.977 kb on + strand at 886.977 kb on + strand, within HGI48_RS04210 at 886.977 kb on + strand, within HGI48_RS04210 at 886.978 kb on - strand, within HGI48_RS04210 at 887.017 kb on + strand, within HGI48_RS04210 at 887.017 kb on + strand at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.023 kb on + strand, within HGI48_RS04210 at 887.023 kb on + strand at 887.024 kb on - strand, within HGI48_RS04210 at 887.024 kb on - strand, within HGI48_RS04210
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 884,022 - HGI48_RS04190 0.63 -0.2 884,025 + HGI48_RS04190 0.64 -0.1 884,025 + +2.4 884,025 + HGI48_RS04190 0.64 -2.5 884,025 + +0.0 884,025 + HGI48_RS04190 0.64 -1.0 884,025 + HGI48_RS04190 0.64 +0.6 884,025 + HGI48_RS04190 0.64 -0.4 884,025 + HGI48_RS04190 0.64 -0.0 884,026 - HGI48_RS04190 0.64 +1.0 884,133 + +0.3 884,133 + -0.1 884,137 + +1.1 884,137 + +0.6 884,190 - -0.4 885,808 + HGI48_RS04200 0.78 +1.1 885,811 - HGI48_RS04200 0.79 +0.3 886,118 + -2.1 886,126 + +0.2 886,137 + HGI48_RS04205 0.10 -1.4 886,138 - HGI48_RS04205 0.11 -0.5 886,149 + HGI48_RS04205 0.16 -0.8 886,153 + HGI48_RS04205 0.18 +0.3 886,153 + HGI48_RS04205 0.18 -1.7 886,166 + HGI48_RS04205 0.25 +1.0 886,176 - HGI48_RS04205 0.30 -0.1 886,195 + HGI48_RS04205 0.39 -1.2 886,196 - HGI48_RS04205 0.40 -0.2 886,270 + HGI48_RS04205 0.77 +0.6 886,271 - HGI48_RS04205 0.77 -0.5 886,291 + HGI48_RS04205 0.87 -0.7 886,318 + +0.6 886,319 - +0.1 886,373 + -0.3 886,373 + +0.0 886,380 + -0.1 886,380 + -1.0 886,401 + +1.4 886,402 - -2.4 886,402 - -0.7 886,402 - -0.5 886,404 - -0.2 886,409 + -0.1 886,409 + +0.3 886,443 + +0.2 886,444 - -0.2 886,444 - -0.4 886,444 - +1.0 886,447 - -1.4 886,529 - -2.1 886,553 + -0.4 886,554 - +0.1 886,555 + -1.4 886,559 + -2.2 886,565 + -0.4 886,566 - -2.8 886,567 + -0.4 886,715 + -1.0 886,724 - -0.1 886,724 - +0.2 886,724 - +0.5 886,738 + -1.7 886,742 + -0.5 886,743 - -0.6 886,882 - +2.2 886,904 + HGI48_RS04210 0.25 +0.6 886,942 + HGI48_RS04210 0.32 -0.4 886,942 + HGI48_RS04210 0.32 -0.5 886,942 + HGI48_RS04210 0.32 -2.0 886,943 - HGI48_RS04210 0.32 +0.6 886,948 + HGI48_RS04210 0.33 +0.0 886,948 + HGI48_RS04210 0.33 -0.0 886,948 + HGI48_RS04210 0.33 -1.4 886,948 + HGI48_RS04210 0.33 +0.5 886,948 + HGI48_RS04210 0.33 -2.0 886,948 + HGI48_RS04210 0.33 +0.6 886,949 - HGI48_RS04210 0.33 -0.7 886,949 - HGI48_RS04210 0.33 -1.0 886,949 - HGI48_RS04210 0.33 +0.5 886,951 - HGI48_RS04210 0.34 -0.4 886,951 - HGI48_RS04210 0.34 -2.2 886,976 - HGI48_RS04210 0.38 +0.3 886,977 + +1.6 886,977 + HGI48_RS04210 0.38 +1.0 886,977 + HGI48_RS04210 0.38 +0.3 886,978 - HGI48_RS04210 0.38 +0.8 887,017 + HGI48_RS04210 0.46 -0.0 887,017 + +1.4 887,018 - HGI48_RS04210 0.46 +0.6 887,018 - HGI48_RS04210 0.46 +0.2 887,018 - HGI48_RS04210 0.46 -2.1 887,018 - HGI48_RS04210 0.46 -1.0 887,018 - HGI48_RS04210 0.46 -1.1 887,019 + HGI48_RS04210 0.46 -1.2 887,019 + HGI48_RS04210 0.46 +0.2 887,019 + HGI48_RS04210 0.46 -0.8 887,019 + HGI48_RS04210 0.46 -0.1 887,019 + +0.0 887,019 + HGI48_RS04210 0.46 -0.5 887,019 + HGI48_RS04210 0.46 -2.0 887,019 + HGI48_RS04210 0.46 +1.4 887,019 + HGI48_RS04210 0.46 +0.6 887,020 - HGI48_RS04210 0.46 -0.6 887,020 - HGI48_RS04210 0.46 +0.5 887,020 - HGI48_RS04210 0.46 +1.4 887,020 - HGI48_RS04210 0.46 -0.2 887,020 - HGI48_RS04210 0.46 +0.0 887,020 - HGI48_RS04210 0.46 -0.2 887,023 + HGI48_RS04210 0.47 -0.7 887,023 + -0.4 887,024 - HGI48_RS04210 0.47 -1.1 887,024 - HGI48_RS04210 0.47 +0.6
Or see this region's nucleotide sequence