Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04150 and HGI48_RS04155 are separated by 516 nucleotides HGI48_RS04155 and HGI48_RS04160 are separated by 189 nucleotides HGI48_RS04160 and HGI48_RS04165 are separated by 511 nucleotides
HGI48_RS04150: HGI48_RS04150 - alkene reductase, at 877,249 to 878,361
_RS04150
HGI48_RS04155: HGI48_RS04155 - TetR family transcriptional regulator, at 878,878 to 879,441
_RS04155
HGI48_RS04160: HGI48_RS04160 - transposase, at 879,631 to 879,894
_RS04160
HGI48_RS04165: HGI48_RS04165 - lipocalin-like domain-containing protein, at 880,406 to 880,882
_RS04165
Position (kb) 878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 877.945 kb on + strand, within HGI48_RS04150 at 877.946 kb on - strand, within HGI48_RS04150 at 877.997 kb on - strand, within HGI48_RS04150 at 878.004 kb on + strand at 878.004 kb on + strand, within HGI48_RS04150 at 878.004 kb on + strand, within HGI48_RS04150 at 878.037 kb on + strand, within HGI48_RS04150 at 878.037 kb on + strand, within HGI48_RS04150 at 878.037 kb on + strand at 878.037 kb on + strand, within HGI48_RS04150 at 878.123 kb on + strand, within HGI48_RS04150 at 878.123 kb on + strand, within HGI48_RS04150 at 878.123 kb on + strand, within HGI48_RS04150 at 878.124 kb on - strand, within HGI48_RS04150 at 878.124 kb on - strand, within HGI48_RS04150 at 878.124 kb on - strand, within HGI48_RS04150 at 878.124 kb on - strand, within HGI48_RS04150 at 878.139 kb on + strand, within HGI48_RS04150 at 878.139 kb on + strand, within HGI48_RS04150 at 878.140 kb on - strand, within HGI48_RS04150 at 878.140 kb on - strand, within HGI48_RS04150 at 878.141 kb on + strand, within HGI48_RS04150 at 878.141 kb on + strand, within HGI48_RS04150 at 878.142 kb on - strand, within HGI48_RS04150 at 878.145 kb on + strand, within HGI48_RS04150 at 878.146 kb on - strand, within HGI48_RS04150 at 878.182 kb on - strand, within HGI48_RS04150 at 878.182 kb on - strand, within HGI48_RS04150 at 878.200 kb on + strand, within HGI48_RS04150 at 878.201 kb on - strand at 878.234 kb on + strand, within HGI48_RS04150 at 878.244 kb on + strand, within HGI48_RS04150 at 878.244 kb on + strand at 878.340 kb on - strand at 878.365 kb on + strand at 878.376 kb on + strand at 878.382 kb on - strand at 878.382 kb on - strand at 878.447 kb on - strand at 878.471 kb on - strand at 878.581 kb on + strand at 878.585 kb on + strand at 878.585 kb on + strand at 878.638 kb on + strand at 878.691 kb on - strand at 878.691 kb on - strand at 878.700 kb on + strand at 878.701 kb on - strand at 878.706 kb on - strand at 878.706 kb on - strand at 878.706 kb on - strand at 878.739 kb on + strand at 878.739 kb on + strand at 878.825 kb on + strand at 878.825 kb on + strand at 878.852 kb on + strand at 878.906 kb on + strand at 878.941 kb on + strand, within HGI48_RS04155 at 878.957 kb on - strand, within HGI48_RS04155 at 879.115 kb on - strand, within HGI48_RS04155 at 879.151 kb on - strand, within HGI48_RS04155 at 879.163 kb on - strand, within HGI48_RS04155 at 879.173 kb on + strand, within HGI48_RS04155 at 879.174 kb on - strand, within HGI48_RS04155 at 879.213 kb on + strand, within HGI48_RS04155 at 879.384 kb on - strand, within HGI48_RS04155 at 879.412 kb on - strand at 879.412 kb on - strand at 879.415 kb on - strand at 879.602 kb on + strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.746 kb on - strand, within HGI48_RS04160 at 879.746 kb on - strand, within HGI48_RS04160 at 879.858 kb on + strand, within HGI48_RS04160 at 879.931 kb on + strand at 879.931 kb on + strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.958 kb on + strand at 879.958 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.964 kb on - strand at 879.964 kb on - strand at 879.994 kb on + strand at 879.994 kb on + strand at 879.994 kb on + strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 880.033 kb on + strand at 880.033 kb on + strand at 880.033 kb on + strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.160 kb on - strand at 880.160 kb on - strand at 880.160 kb on - strand at 880.161 kb on + strand at 880.161 kb on + strand at 880.237 kb on + strand at 880.237 kb on + strand at 880.237 kb on + strand at 880.238 kb on - strand at 880.238 kb on - strand at 880.314 kb on + strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.373 kb on - strand at 880.376 kb on + strand at 880.377 kb on - strand at 880.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 877,945 + HGI48_RS04150 0.63 -0.4 877,946 - HGI48_RS04150 0.63 +0.6 877,997 - HGI48_RS04150 0.67 -0.6 878,004 + -1.0 878,004 + HGI48_RS04150 0.68 -0.5 878,004 + HGI48_RS04150 0.68 +1.1 878,037 + HGI48_RS04150 0.71 +0.1 878,037 + HGI48_RS04150 0.71 +1.0 878,037 + +0.6 878,037 + HGI48_RS04150 0.71 +0.2 878,123 + HGI48_RS04150 0.79 -2.0 878,123 + HGI48_RS04150 0.79 +0.1 878,123 + HGI48_RS04150 0.79 -0.5 878,124 - HGI48_RS04150 0.79 -0.5 878,124 - HGI48_RS04150 0.79 -0.2 878,124 - HGI48_RS04150 0.79 -1.1 878,124 - HGI48_RS04150 0.79 +0.2 878,139 + HGI48_RS04150 0.80 -0.4 878,139 + HGI48_RS04150 0.80 +0.9 878,140 - HGI48_RS04150 0.80 +0.1 878,140 - HGI48_RS04150 0.80 +0.6 878,141 + HGI48_RS04150 0.80 -1.9 878,141 + HGI48_RS04150 0.80 +0.6 878,142 - HGI48_RS04150 0.80 +0.8 878,145 + HGI48_RS04150 0.81 -1.2 878,146 - HGI48_RS04150 0.81 -1.7 878,182 - HGI48_RS04150 0.84 -1.7 878,182 - HGI48_RS04150 0.84 -0.2 878,200 + HGI48_RS04150 0.85 -2.4 878,201 - -0.4 878,234 + HGI48_RS04150 0.88 +0.6 878,244 + HGI48_RS04150 0.89 -0.1 878,244 + +2.0 878,340 - -0.4 878,365 + +1.0 878,376 + -0.8 878,382 - -1.4 878,382 - +0.2 878,447 - +1.0 878,471 - -1.4 878,581 + +0.3 878,585 + +0.0 878,585 + -2.5 878,638 + -0.4 878,691 - +0.2 878,691 - +0.0 878,700 + +0.1 878,701 - -0.4 878,706 - +0.2 878,706 - -1.4 878,706 - -1.2 878,739 + +0.2 878,739 + -2.8 878,825 + -0.8 878,825 + +0.3 878,852 + +1.0 878,906 + +2.4 878,941 + HGI48_RS04155 0.11 -1.2 878,957 - HGI48_RS04155 0.14 -0.4 879,115 - HGI48_RS04155 0.42 -0.7 879,151 - HGI48_RS04155 0.48 -1.0 879,163 - HGI48_RS04155 0.51 -0.0 879,173 + HGI48_RS04155 0.52 -0.3 879,174 - HGI48_RS04155 0.52 +0.5 879,213 + HGI48_RS04155 0.59 +0.7 879,384 - HGI48_RS04155 0.90 -0.7 879,412 - -0.7 879,412 - -0.4 879,415 - -0.8 879,602 + -0.7 879,603 - -0.1 879,603 - +0.4 879,746 - HGI48_RS04160 0.44 +1.0 879,746 - HGI48_RS04160 0.44 -0.2 879,858 + HGI48_RS04160 0.86 +0.4 879,931 + +0.0 879,931 + +0.4 879,932 - -0.5 879,932 - +0.8 879,932 - -0.4 879,958 + +1.6 879,958 + +0.9 879,963 + +1.3 879,963 + +0.1 879,963 + +0.2 879,963 + +0.3 879,963 + -2.0 879,964 - -1.1 879,964 - +0.7 879,994 + +0.6 879,994 + -0.4 879,994 + -2.0 879,995 - +0.0 879,995 - -0.3 879,995 - +0.6 879,995 - +0.1 879,995 - -0.4 879,995 - +0.2 880,033 + -1.8 880,033 + -1.0 880,033 + +0.2 880,034 - +0.8 880,034 - -0.7 880,034 - +1.6 880,034 - -0.2 880,034 - +0.6 880,159 + +0.3 880,159 + +0.4 880,159 + -0.7 880,159 + -0.0 880,159 + -0.8 880,159 + +0.2 880,160 - +0.2 880,160 - +0.3 880,160 - -1.7 880,161 + +0.9 880,161 + +0.4 880,237 + +1.2 880,237 + +0.9 880,237 + +0.2 880,238 - +0.0 880,238 - -0.0 880,314 + +0.0 880,315 - +0.6 880,315 - +0.3 880,315 - +0.0 880,315 - -0.1 880,315 - -0.4 880,315 - +1.1 880,373 - -0.5 880,376 + +2.4 880,377 - -0.6 880,414 + -0.8
Or see this region's nucleotide sequence