Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03940 and HGI48_RS03945 overlap by 4 nucleotides HGI48_RS03945 and HGI48_RS03950 are separated by 25 nucleotides HGI48_RS03950 and HGI48_RS03955 are separated by 57 nucleotides HGI48_RS03955 and HGI48_RS03960 are separated by 14 nucleotides
HGI48_RS03940: HGI48_RS03940 - EexN family lipoprotein, at 837,056 to 837,331
_RS03940
HGI48_RS03945: HGI48_RS03945 - LysR family transcriptional regulator, at 837,328 to 838,272
_RS03945
HGI48_RS03950: HGI48_RS03950 - DUF2867 domain-containing protein, at 838,298 to 838,834
_RS03950
HGI48_RS03955: HGI48_RS03955 - arginase family protein, at 838,892 to 839,770
_RS03955
HGI48_RS03960: HGI48_RS03960 - alkene reductase, at 839,785 to 840,867
_RS03960
Position (kb) 838
839 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand at 837.464 kb on + strand at 837.465 kb on - strand, within HGI48_RS03945 at 837.465 kb on - strand at 837.465 kb on - strand, within HGI48_RS03945 at 837.465 kb on - strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.516 kb on + strand at 837.542 kb on - strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.695 kb on - strand, within HGI48_RS03945 at 837.793 kb on + strand, within HGI48_RS03945 at 837.794 kb on - strand, within HGI48_RS03945 at 837.845 kb on - strand, within HGI48_RS03945 at 837.845 kb on - strand, within HGI48_RS03945 at 837.845 kb on - strand at 837.851 kb on + strand, within HGI48_RS03945 at 837.851 kb on + strand, within HGI48_RS03945 at 837.852 kb on - strand, within HGI48_RS03945 at 838.132 kb on + strand, within HGI48_RS03945 at 838.132 kb on + strand, within HGI48_RS03945 at 838.132 kb on + strand, within HGI48_RS03945 at 838.133 kb on - strand, within HGI48_RS03945 at 838.133 kb on - strand, within HGI48_RS03945 at 838.133 kb on - strand at 838.133 kb on - strand, within HGI48_RS03945 at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.265 kb on - strand at 838.265 kb on - strand at 838.265 kb on - strand at 838.265 kb on - strand at 838.273 kb on + strand at 838.274 kb on - strand at 838.299 kb on + strand at 838.380 kb on + strand, within HGI48_RS03950 at 838.380 kb on + strand, within HGI48_RS03950 at 838.380 kb on + strand, within HGI48_RS03950 at 838.380 kb on + strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand at 838.430 kb on + strand, within HGI48_RS03950 at 838.430 kb on + strand, within HGI48_RS03950 at 838.430 kb on + strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.437 kb on + strand, within HGI48_RS03950 at 838.437 kb on + strand, within HGI48_RS03950 at 838.437 kb on + strand, within HGI48_RS03950 at 838.438 kb on - strand, within HGI48_RS03950 at 838.569 kb on + strand, within HGI48_RS03950 at 838.570 kb on - strand, within HGI48_RS03950 at 838.742 kb on - strand, within HGI48_RS03950 at 838.846 kb on + strand at 838.847 kb on - strand at 838.847 kb on - strand at 838.875 kb on - strand at 838.875 kb on - strand at 838.875 kb on - strand at 838.985 kb on - strand, within HGI48_RS03955 at 839.095 kb on - strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.229 kb on - strand, within HGI48_RS03955 at 839.229 kb on - strand, within HGI48_RS03955 at 839.452 kb on - strand, within HGI48_RS03955 at 839.466 kb on + strand, within HGI48_RS03955 at 839.510 kb on + strand, within HGI48_RS03955 at 839.510 kb on + strand, within HGI48_RS03955 at 839.511 kb on - strand, within HGI48_RS03955 at 839.511 kb on - strand, within HGI48_RS03955 at 839.681 kb on + strand, within HGI48_RS03955 at 839.682 kb on - strand, within HGI48_RS03955 at 839.682 kb on - strand, within HGI48_RS03955 at 839.697 kb on + strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.701 kb on - strand at 839.755 kb on + strand at 839.755 kb on + strand at 839.798 kb on + strand at 839.798 kb on + strand at 839.816 kb on + strand at 839.816 kb on + strand at 839.817 kb on - strand at 839.817 kb on - strand at 839.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 837,464 + HGI48_RS03945 0.14 +0.7 837,464 + HGI48_RS03945 0.14 -1.1 837,464 + HGI48_RS03945 0.14 -1.2 837,464 + HGI48_RS03945 0.14 -1.7 837,464 + HGI48_RS03945 0.14 -0.6 837,464 + HGI48_RS03945 0.14 -3.2 837,464 + HGI48_RS03945 0.14 +0.5 837,464 + -0.3 837,464 + +1.4 837,465 - HGI48_RS03945 0.14 +0.8 837,465 - +1.1 837,465 - HGI48_RS03945 0.14 +0.7 837,465 - HGI48_RS03945 0.14 +0.2 837,477 + HGI48_RS03945 0.16 -0.9 837,477 + HGI48_RS03945 0.16 +0.2 837,477 + HGI48_RS03945 0.16 +0.4 837,477 + HGI48_RS03945 0.16 +0.2 837,478 - HGI48_RS03945 0.16 +1.0 837,478 - HGI48_RS03945 0.16 +0.5 837,478 - +1.4 837,478 - HGI48_RS03945 0.16 -1.4 837,478 - HGI48_RS03945 0.16 -1.3 837,478 - HGI48_RS03945 0.16 -0.5 837,478 - HGI48_RS03945 0.16 +1.0 837,478 - HGI48_RS03945 0.16 +0.2 837,516 + +1.7 837,542 - HGI48_RS03945 0.23 +1.1 837,694 + HGI48_RS03945 0.39 -0.9 837,694 + HGI48_RS03945 0.39 +0.7 837,694 + HGI48_RS03945 0.39 -0.7 837,694 + HGI48_RS03945 0.39 -1.2 837,695 - HGI48_RS03945 0.39 +0.8 837,793 + HGI48_RS03945 0.49 +1.0 837,794 - HGI48_RS03945 0.49 +0.2 837,845 - HGI48_RS03945 0.55 -0.9 837,845 - HGI48_RS03945 0.55 -0.3 837,845 - -0.3 837,851 + HGI48_RS03945 0.55 -0.0 837,851 + HGI48_RS03945 0.55 -1.9 837,852 - HGI48_RS03945 0.55 -0.7 838,132 + HGI48_RS03945 0.85 +0.7 838,132 + HGI48_RS03945 0.85 +0.7 838,132 + HGI48_RS03945 0.85 -1.7 838,133 - HGI48_RS03945 0.85 -0.3 838,133 - HGI48_RS03945 0.85 +1.4 838,133 - +0.7 838,133 - HGI48_RS03945 0.85 +0.7 838,264 + -0.8 838,264 + +0.7 838,264 + -0.2 838,264 + +0.5 838,264 + -0.3 838,264 + +0.9 838,264 + -0.9 838,265 - -0.6 838,265 - +0.3 838,265 - +2.7 838,265 - +1.1 838,273 + -0.8 838,274 - +0.2 838,299 + -0.2 838,380 + HGI48_RS03950 0.15 +1.1 838,380 + HGI48_RS03950 0.15 -0.6 838,380 + HGI48_RS03950 0.15 -0.4 838,380 + HGI48_RS03950 0.15 -0.9 838,381 - HGI48_RS03950 0.15 -0.6 838,381 - -0.9 838,381 - HGI48_RS03950 0.15 -0.9 838,381 - HGI48_RS03950 0.15 +1.0 838,381 - HGI48_RS03950 0.15 -0.3 838,381 - HGI48_RS03950 0.15 -0.3 838,381 - HGI48_RS03950 0.15 +0.0 838,381 - +2.0 838,430 + HGI48_RS03950 0.25 -0.6 838,430 + HGI48_RS03950 0.25 -1.7 838,430 + HGI48_RS03950 0.25 +0.2 838,431 - HGI48_RS03950 0.25 -1.3 838,431 - HGI48_RS03950 0.25 +0.5 838,431 - HGI48_RS03950 0.25 +1.5 838,431 - HGI48_RS03950 0.25 -0.0 838,431 - HGI48_RS03950 0.25 +1.1 838,431 - HGI48_RS03950 0.25 +0.7 838,431 - HGI48_RS03950 0.25 +1.1 838,431 - HGI48_RS03950 0.25 -2.3 838,437 + HGI48_RS03950 0.26 -1.2 838,437 + HGI48_RS03950 0.26 -1.2 838,437 + HGI48_RS03950 0.26 -0.2 838,438 - HGI48_RS03950 0.26 -0.4 838,569 + HGI48_RS03950 0.50 -0.3 838,570 - HGI48_RS03950 0.51 -0.6 838,742 - HGI48_RS03950 0.83 -0.3 838,846 + -0.3 838,847 - +0.3 838,847 - -0.8 838,875 - +1.7 838,875 - -2.1 838,875 - -0.4 838,985 - HGI48_RS03955 0.11 -1.8 839,095 - HGI48_RS03955 0.23 -0.7 839,228 + HGI48_RS03955 0.38 +0.7 839,228 + HGI48_RS03955 0.38 -0.6 839,228 + HGI48_RS03955 0.38 -0.0 839,228 + HGI48_RS03955 0.38 -1.2 839,229 - HGI48_RS03955 0.38 -0.9 839,229 - HGI48_RS03955 0.38 +0.4 839,452 - HGI48_RS03955 0.64 +0.7 839,466 + HGI48_RS03955 0.65 -0.2 839,510 + HGI48_RS03955 0.70 -0.1 839,510 + HGI48_RS03955 0.70 -1.4 839,511 - HGI48_RS03955 0.70 -0.7 839,511 - HGI48_RS03955 0.70 +1.0 839,681 + HGI48_RS03955 0.90 -0.7 839,682 - HGI48_RS03955 0.90 -0.1 839,682 - HGI48_RS03955 0.90 +0.1 839,697 + -0.3 839,698 - -0.1 839,698 - +0.2 839,698 - +0.5 839,698 - -1.3 839,698 - -2.2 839,698 - +0.9 839,698 - -1.3 839,700 + -0.3 839,700 + -0.5 839,700 + +0.5 839,700 + -0.1 839,700 + +0.1 839,700 + -1.7 839,700 + -2.2 839,700 + +1.2 839,700 + +0.1 839,700 + +0.3 839,701 - +0.3 839,755 + +1.1 839,755 + +1.8 839,798 + +2.0 839,798 + -0.7 839,816 + +1.2 839,816 + +0.8 839,817 - +0.7 839,817 - -0.2 839,817 - +0.3
Or see this region's nucleotide sequence