Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03765 and HGI48_RS03770 are separated by 26 nucleotides HGI48_RS03770 and HGI48_RS03775 are separated by 23 nucleotides
HGI48_RS03765: HGI48_RS03765 - 5-dehydro-2-deoxygluconokinase, at 802,312 to 804,297
_RS03765
HGI48_RS03770: HGI48_RS03770 - myo-inosose-2 dehydratase, at 804,324 to 805,214
_RS03770
HGI48_RS03775: HGI48_RS03775 - 5-deoxy-glucuronate isomerase, at 805,238 to 806,065
_RS03775
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 803.567 kb on + strand at 803.609 kb on + strand, within HGI48_RS03765 at 803.630 kb on + strand, within HGI48_RS03765 at 803.630 kb on + strand, within HGI48_RS03765 at 803.631 kb on - strand, within HGI48_RS03765 at 803.631 kb on - strand at 803.631 kb on - strand, within HGI48_RS03765 at 803.631 kb on - strand, within HGI48_RS03765 at 803.633 kb on + strand, within HGI48_RS03765 at 803.634 kb on - strand at 803.668 kb on - strand, within HGI48_RS03765 at 803.668 kb on - strand, within HGI48_RS03765 at 803.971 kb on + strand, within HGI48_RS03765 at 803.972 kb on - strand, within HGI48_RS03765 at 803.972 kb on - strand, within HGI48_RS03765 at 803.972 kb on - strand, within HGI48_RS03765 at 804.116 kb on + strand at 804.116 kb on + strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.256 kb on - strand at 804.256 kb on - strand at 804.259 kb on + strand at 804.259 kb on + strand at 804.259 kb on + strand at 804.259 kb on + strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.305 kb on + strand at 804.306 kb on - strand at 804.306 kb on - strand at 804.344 kb on + strand at 804.345 kb on - strand at 804.345 kb on - strand at 804.345 kb on - strand at 804.345 kb on - strand at 804.532 kb on - strand, within HGI48_RS03770 at 804.718 kb on - strand, within HGI48_RS03770 at 804.726 kb on - strand, within HGI48_RS03770 at 804.750 kb on - strand at 804.788 kb on + strand, within HGI48_RS03770 at 804.950 kb on + strand, within HGI48_RS03770 at 804.950 kb on + strand at 804.950 kb on + strand at 804.950 kb on + strand, within HGI48_RS03770 at 805.060 kb on - strand, within HGI48_RS03770 at 805.155 kb on + strand at 805.155 kb on + strand at 805.156 kb on - strand at 805.218 kb on + strand at 805.248 kb on + strand at 805.248 kb on + strand at 805.248 kb on + strand at 805.248 kb on + strand at 805.249 kb on - strand at 805.249 kb on - strand at 805.340 kb on + strand, within HGI48_RS03775 at 805.340 kb on + strand, within HGI48_RS03775 at 805.340 kb on + strand, within HGI48_RS03775 at 805.453 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.466 kb on - strand, within HGI48_RS03775 at 805.466 kb on - strand, within HGI48_RS03775 at 805.466 kb on - strand at 805.502 kb on + strand, within HGI48_RS03775 at 805.502 kb on + strand, within HGI48_RS03775 at 805.646 kb on - strand, within HGI48_RS03775 at 805.663 kb on + strand, within HGI48_RS03775 at 805.664 kb on - strand, within HGI48_RS03775 at 805.664 kb on - strand, within HGI48_RS03775 at 805.715 kb on + strand, within HGI48_RS03775 at 805.715 kb on + strand, within HGI48_RS03775 at 805.716 kb on - strand, within HGI48_RS03775 at 805.716 kb on - strand, within HGI48_RS03775 at 805.716 kb on - strand, within HGI48_RS03775 at 805.732 kb on + strand, within HGI48_RS03775 at 805.732 kb on + strand at 805.802 kb on + strand, within HGI48_RS03775 at 805.802 kb on + strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.805 kb on + strand, within HGI48_RS03775 at 805.805 kb on + strand, within HGI48_RS03775 at 805.806 kb on - strand, within HGI48_RS03775 at 805.806 kb on - strand, within HGI48_RS03775 at 805.850 kb on + strand at 805.851 kb on - strand, within HGI48_RS03775 at 805.889 kb on + strand, within HGI48_RS03775 at 805.889 kb on + strand, within HGI48_RS03775 at 805.890 kb on - strand, within HGI48_RS03775 at 805.950 kb on - strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.962 kb on - strand, within HGI48_RS03775 at 805.962 kb on - strand at 805.962 kb on - strand at 805.962 kb on - strand, within HGI48_RS03775 at 805.962 kb on - strand, within HGI48_RS03775 at 805.966 kb on + strand, within HGI48_RS03775 at 806.002 kb on + strand at 806.112 kb on + strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.145 kb on + strand at 806.145 kb on + strand at 806.145 kb on + strand at 806.146 kb on - strand at 806.172 kb on + strand at 806.172 kb on + strand at 806.172 kb on + strand at 806.173 kb on - strand at 806.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 803,567 + +1.7 803,609 + HGI48_RS03765 0.65 -0.0 803,630 + HGI48_RS03765 0.66 -0.3 803,630 + HGI48_RS03765 0.66 +0.3 803,631 - HGI48_RS03765 0.66 +0.2 803,631 - +0.1 803,631 - HGI48_RS03765 0.66 -1.3 803,631 - HGI48_RS03765 0.66 +0.3 803,633 + HGI48_RS03765 0.67 -0.8 803,634 - +1.1 803,668 - HGI48_RS03765 0.68 +0.9 803,668 - HGI48_RS03765 0.68 -0.7 803,971 + HGI48_RS03765 0.84 +1.3 803,972 - HGI48_RS03765 0.84 -0.9 803,972 - HGI48_RS03765 0.84 -0.3 803,972 - HGI48_RS03765 0.84 -0.7 804,116 + +0.7 804,116 + +0.1 804,117 - -2.3 804,117 - -1.0 804,117 - -0.9 804,117 - +1.7 804,117 - -0.1 804,117 - -0.7 804,117 - -0.1 804,255 + +1.3 804,255 + -0.4 804,255 + -1.3 804,255 + -2.5 804,256 - +0.3 804,256 - +1.3 804,259 + +1.7 804,259 + +1.3 804,259 + +0.7 804,259 + +1.1 804,260 - +0.1 804,260 - -0.3 804,260 - +1.0 804,260 - -0.3 804,260 - +1.0 804,305 + +0.0 804,306 - -0.3 804,306 - +2.4 804,344 + +1.4 804,345 - -0.1 804,345 - +0.7 804,345 - -0.1 804,345 - +0.7 804,532 - HGI48_RS03770 0.23 +0.1 804,718 - HGI48_RS03770 0.44 -0.1 804,726 - HGI48_RS03770 0.45 -1.9 804,750 - +0.1 804,788 + HGI48_RS03770 0.52 -0.9 804,950 + HGI48_RS03770 0.70 +0.2 804,950 + -0.9 804,950 + +0.1 804,950 + HGI48_RS03770 0.70 -0.2 805,060 - HGI48_RS03770 0.83 -1.7 805,155 + -0.9 805,155 + -1.0 805,156 - +1.3 805,218 + +1.0 805,248 + +0.2 805,248 + -0.8 805,248 + -0.3 805,248 + +0.7 805,249 - -1.7 805,249 - +0.1 805,340 + HGI48_RS03775 0.12 +0.4 805,340 + HGI48_RS03775 0.12 -0.7 805,340 + HGI48_RS03775 0.12 -0.6 805,453 + HGI48_RS03775 0.26 -1.5 805,465 + HGI48_RS03775 0.27 -0.5 805,465 + HGI48_RS03775 0.27 +1.2 805,465 + HGI48_RS03775 0.27 -2.7 805,465 + HGI48_RS03775 0.27 -1.5 805,466 - HGI48_RS03775 0.28 -0.2 805,466 - HGI48_RS03775 0.28 -0.7 805,466 - +0.1 805,502 + HGI48_RS03775 0.32 -0.1 805,502 + HGI48_RS03775 0.32 -0.7 805,646 - HGI48_RS03775 0.49 -1.9 805,663 + HGI48_RS03775 0.51 -0.7 805,664 - HGI48_RS03775 0.51 +1.0 805,664 - HGI48_RS03775 0.51 -1.1 805,715 + HGI48_RS03775 0.58 +0.1 805,715 + HGI48_RS03775 0.58 -0.1 805,716 - HGI48_RS03775 0.58 +0.5 805,716 - HGI48_RS03775 0.58 -0.7 805,716 - HGI48_RS03775 0.58 +0.7 805,732 + HGI48_RS03775 0.60 -0.2 805,732 + +2.3 805,802 + HGI48_RS03775 0.68 -0.1 805,802 + HGI48_RS03775 0.68 -0.5 805,803 - HGI48_RS03775 0.68 +0.9 805,803 - HGI48_RS03775 0.68 +0.1 805,803 - HGI48_RS03775 0.68 -1.3 805,803 - HGI48_RS03775 0.68 -0.6 805,805 + HGI48_RS03775 0.68 -0.0 805,805 + HGI48_RS03775 0.68 +0.4 805,806 - HGI48_RS03775 0.69 -2.8 805,806 - HGI48_RS03775 0.69 -0.1 805,850 + -0.9 805,851 - HGI48_RS03775 0.74 -0.1 805,889 + HGI48_RS03775 0.79 +0.1 805,889 + HGI48_RS03775 0.79 -0.9 805,890 - HGI48_RS03775 0.79 -0.7 805,950 - HGI48_RS03775 0.86 -0.1 805,958 + HGI48_RS03775 0.87 -0.3 805,958 + HGI48_RS03775 0.87 -0.1 805,958 + HGI48_RS03775 0.87 -0.4 805,958 + HGI48_RS03775 0.87 -1.1 805,959 - HGI48_RS03775 0.87 +1.2 805,959 - HGI48_RS03775 0.87 +0.9 805,959 - HGI48_RS03775 0.87 -1.4 805,959 - HGI48_RS03775 0.87 +0.7 805,961 + HGI48_RS03775 0.87 -0.3 805,961 + HGI48_RS03775 0.87 -0.1 805,961 + HGI48_RS03775 0.87 +0.8 805,961 + HGI48_RS03775 0.87 +0.1 805,961 + HGI48_RS03775 0.87 -0.5 805,962 - HGI48_RS03775 0.87 +0.2 805,962 - +0.1 805,962 - +0.1 805,962 - HGI48_RS03775 0.87 -0.9 805,962 - HGI48_RS03775 0.87 -0.3 805,966 + HGI48_RS03775 0.88 -1.3 806,002 + +0.7 806,112 + -2.4 806,113 - +0.3 806,113 - -1.1 806,113 - -0.6 806,113 - -1.7 806,113 - -0.2 806,145 + +0.9 806,145 + -1.2 806,145 + +0.3 806,146 - -1.7 806,172 + -0.3 806,172 + +0.7 806,172 + -0.1 806,173 - +0.7 806,173 - +0.8
Or see this region's nucleotide sequence