Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03575

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03570 and HGI48_RS03575 overlap by 4 nucleotidesHGI48_RS03575 and HGI48_RS03580 are separated by 120 nucleotides HGI48_RS03570: HGI48_RS03570 - cation/acetate symporter ActP, at 754,000 to 755,658 _RS03570 HGI48_RS03575: HGI48_RS03575 - DUF485 domain-containing protein, at 755,655 to 755,966 _RS03575 HGI48_RS03580: HGI48_RS03580 - acetate--CoA ligase, at 756,087 to 758,048 _RS03580 Position (kb) 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 754.665 kb on + strand, within HGI48_RS03570at 754.665 kb on + strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.727 kb on + strand, within HGI48_RS03570at 754.727 kb on + strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.733 kb on + strand, within HGI48_RS03570at 754.733 kb on + strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.908 kb on + strandat 754.909 kb on - strand, within HGI48_RS03570at 755.069 kb on + strandat 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strandat 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.171 kb on + strand, within HGI48_RS03570at 755.171 kb on + strand, within HGI48_RS03570at 755.171 kb on + strand, within HGI48_RS03570at 755.172 kb on - strand, within HGI48_RS03570at 755.172 kb on - strand, within HGI48_RS03570at 755.211 kb on + strand, within HGI48_RS03570at 755.231 kb on - strand, within HGI48_RS03570at 755.245 kb on + strand, within HGI48_RS03570at 755.245 kb on + strand, within HGI48_RS03570at 755.245 kb on + strand, within HGI48_RS03570at 755.246 kb on - strand, within HGI48_RS03570at 755.337 kb on - strand, within HGI48_RS03570at 755.337 kb on - strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.364 kb on - strand, within HGI48_RS03570at 755.364 kb on - strand, within HGI48_RS03570at 755.364 kb on - strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.406 kb on - strand, within HGI48_RS03570at 755.406 kb on - strand, within HGI48_RS03570at 755.462 kb on + strandat 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.463 kb on - strand, within HGI48_RS03570at 755.463 kb on - strandat 755.463 kb on - strand, within HGI48_RS03570at 755.465 kb on + strand, within HGI48_RS03570at 755.465 kb on + strand, within HGI48_RS03570at 755.465 kb on + strand, within HGI48_RS03570at 755.501 kb on + strandat 755.502 kb on - strandat 755.502 kb on - strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.556 kb on + strandat 755.556 kb on + strandat 755.557 kb on - strandat 755.722 kb on + strandat 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strandat 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strandat 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strandat 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.726 kb on + strand, within HGI48_RS03575at 755.726 kb on + strand, within HGI48_RS03575at 755.726 kb on + strand, within HGI48_RS03575at 755.727 kb on - strand, within HGI48_RS03575at 755.857 kb on + strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.921 kb on + strand, within HGI48_RS03575at 755.921 kb on + strand, within HGI48_RS03575at 755.922 kb on - strand, within HGI48_RS03575at 755.922 kb on - strand, within HGI48_RS03575at 755.925 kb on + strand, within HGI48_RS03575at 755.926 kb on - strand, within HGI48_RS03575at 755.926 kb on - strand, within HGI48_RS03575at 755.926 kb on - strand, within HGI48_RS03575at 755.969 kb on + strandat 755.970 kb on - strandat 755.985 kb on + strandat 755.985 kb on + strandat 755.986 kb on - strandat 755.986 kb on - strandat 755.986 kb on - strandat 756.164 kb on + strandat 756.209 kb on + strandat 756.323 kb on - strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.370 kb on + strand, within HGI48_RS03580at 756.370 kb on + strand, within HGI48_RS03580at 756.370 kb on + strand, within HGI48_RS03580at 756.371 kb on - strand, within HGI48_RS03580at 756.371 kb on - strandat 756.520 kb on + strand, within HGI48_RS03580at 756.521 kb on - strand, within HGI48_RS03580at 756.523 kb on + strand, within HGI48_RS03580at 756.523 kb on + strand, within HGI48_RS03580at 756.562 kb on + strand, within HGI48_RS03580at 756.562 kb on + strand, within HGI48_RS03580at 756.562 kb on + strand, within HGI48_RS03580at 756.563 kb on - strand, within HGI48_RS03580at 756.563 kb on - strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.587 kb on - strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.718 kb on - strand, within HGI48_RS03580at 756.718 kb on - strand, within HGI48_RS03580at 756.815 kb on + strand, within HGI48_RS03580at 756.856 kb on + strand, within HGI48_RS03580at 756.857 kb on - strand, within HGI48_RS03580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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754,665 + HGI48_RS03570 0.40 +1.0
754,665 + HGI48_RS03570 0.40 -1.9
754,666 - HGI48_RS03570 0.40 -1.6
754,666 - HGI48_RS03570 0.40 -1.3
754,666 - HGI48_RS03570 0.40 -0.2
754,666 - HGI48_RS03570 0.40 -0.7
754,666 - HGI48_RS03570 0.40 +0.3
754,666 - HGI48_RS03570 0.40 -0.2
754,666 - HGI48_RS03570 0.40 +0.0
754,666 - HGI48_RS03570 0.40 -0.4
754,666 - HGI48_RS03570 0.40 -3.0
754,666 - HGI48_RS03570 0.40 -0.6
754,666 - HGI48_RS03570 0.40 -0.7
754,727 + HGI48_RS03570 0.44 -0.5
754,727 + HGI48_RS03570 0.44 -0.2
754,728 - HGI48_RS03570 0.44 +0.5
754,728 - HGI48_RS03570 0.44 +0.1
754,728 - HGI48_RS03570 0.44 +0.9
754,733 + HGI48_RS03570 0.44 +0.4
754,733 + HGI48_RS03570 0.44 -2.5
754,734 - HGI48_RS03570 0.44 -0.3
754,734 - HGI48_RS03570 0.44 -0.5
754,734 - HGI48_RS03570 0.44 +2.3
754,734 - HGI48_RS03570 0.44 +0.0
754,908 + +0.1
754,909 - HGI48_RS03570 0.55 +0.1
755,069 + +0.7
755,069 + HGI48_RS03570 0.64 +0.7
755,069 + HGI48_RS03570 0.64 -1.6
755,069 + HGI48_RS03570 0.64 +0.1
755,069 + HGI48_RS03570 0.64 -0.3
755,069 + HGI48_RS03570 0.64 +0.5
755,069 + HGI48_RS03570 0.64 -0.9
755,070 - HGI48_RS03570 0.64 -0.7
755,070 - HGI48_RS03570 0.64 -1.3
755,070 - HGI48_RS03570 0.64 +0.4
755,070 - HGI48_RS03570 0.64 +0.3
755,070 - HGI48_RS03570 0.64 +0.0
755,070 - HGI48_RS03570 0.64 +0.2
755,070 - HGI48_RS03570 0.64 -0.3
755,070 - HGI48_RS03570 0.64 -0.3
755,070 - HGI48_RS03570 0.64 +0.5
755,070 - HGI48_RS03570 0.64 -0.6
755,070 - HGI48_RS03570 0.64 -1.1
755,070 - HGI48_RS03570 0.64 -0.2
755,111 + HGI48_RS03570 0.67 +1.3
755,111 + +0.1
755,111 + HGI48_RS03570 0.67 -1.9
755,111 + HGI48_RS03570 0.67 +1.7
755,111 + HGI48_RS03570 0.67 -0.3
755,111 + HGI48_RS03570 0.67 +0.9
755,111 + HGI48_RS03570 0.67 -0.7
755,111 + HGI48_RS03570 0.67 -1.0
755,111 + HGI48_RS03570 0.67 +0.5
755,112 - HGI48_RS03570 0.67 -1.5
755,112 - HGI48_RS03570 0.67 -0.9
755,112 - HGI48_RS03570 0.67 -1.6
755,112 - HGI48_RS03570 0.67 -1.1
755,112 - HGI48_RS03570 0.67 +0.9
755,171 + HGI48_RS03570 0.71 -0.8
755,171 + HGI48_RS03570 0.71 +0.4
755,171 + HGI48_RS03570 0.71 -0.3
755,172 - HGI48_RS03570 0.71 +0.5
755,172 - HGI48_RS03570 0.71 +0.7
755,211 + HGI48_RS03570 0.73 +0.4
755,231 - HGI48_RS03570 0.74 +1.0
755,245 + HGI48_RS03570 0.75 +0.0
755,245 + HGI48_RS03570 0.75 -0.5
755,245 + HGI48_RS03570 0.75 -1.1
755,246 - HGI48_RS03570 0.75 -1.1
755,337 - HGI48_RS03570 0.81 -0.9
755,337 - HGI48_RS03570 0.81 -0.3
755,363 + HGI48_RS03570 0.82 +0.1
755,363 + HGI48_RS03570 0.82 +0.4
755,363 + HGI48_RS03570 0.82 -0.3
755,363 + HGI48_RS03570 0.82 +0.9
755,363 + HGI48_RS03570 0.82 -1.5
755,363 + HGI48_RS03570 0.82 +0.5
755,364 - HGI48_RS03570 0.82 +0.7
755,364 - HGI48_RS03570 0.82 +1.7
755,364 - HGI48_RS03570 0.82 -0.2
755,405 + HGI48_RS03570 0.85 +0.9
755,405 + HGI48_RS03570 0.85 -0.8
755,405 + HGI48_RS03570 0.85 +0.9
755,405 + HGI48_RS03570 0.85 +0.4
755,405 + HGI48_RS03570 0.85 -0.0
755,406 - HGI48_RS03570 0.85 +1.0
755,406 - HGI48_RS03570 0.85 -0.6
755,462 + -0.9
755,462 + HGI48_RS03570 0.88 +0.5
755,462 + HGI48_RS03570 0.88 -0.5
755,462 + HGI48_RS03570 0.88 +0.7
755,462 + HGI48_RS03570 0.88 -1.0
755,462 + HGI48_RS03570 0.88 +0.7
755,463 - HGI48_RS03570 0.88 -0.5
755,463 - +0.7
755,463 - HGI48_RS03570 0.88 +0.0
755,465 + HGI48_RS03570 0.88 +1.5
755,465 + HGI48_RS03570 0.88 -0.1
755,465 + HGI48_RS03570 0.88 +0.0
755,501 + +0.5
755,502 - +0.3
755,502 - +0.8
755,510 + +0.3
755,510 + +2.1
755,510 + -0.2
755,510 + +0.4
755,510 + -0.5
755,510 + -0.4
755,511 - -0.3
755,511 - -0.9
755,511 - -2.0
755,511 - +0.3
755,511 - +0.7
755,511 - -1.6
755,511 - +0.4
755,511 - -0.5
755,511 - -0.9
755,556 + -0.5
755,556 + +0.7
755,557 - -0.8
755,722 + +1.7
755,722 + HGI48_RS03575 0.21 -0.1
755,722 + HGI48_RS03575 0.21 +1.0
755,722 + HGI48_RS03575 0.21 -0.7
755,722 + HGI48_RS03575 0.21 -0.8
755,722 + +1.1
755,722 + HGI48_RS03575 0.21 +0.3
755,722 + HGI48_RS03575 0.21 -0.7
755,722 + HGI48_RS03575 0.21 +0.4
755,722 + HGI48_RS03575 0.21 -1.0
755,722 + HGI48_RS03575 0.21 +1.0
755,722 + HGI48_RS03575 0.21 +0.5
755,722 + HGI48_RS03575 0.21 +0.0
755,722 + HGI48_RS03575 0.21 -1.8
755,722 + HGI48_RS03575 0.21 -0.4
755,722 + HGI48_RS03575 0.21 +0.5
755,723 - HGI48_RS03575 0.22 -0.2
755,723 - +0.7
755,723 - HGI48_RS03575 0.22 -0.3
755,723 - HGI48_RS03575 0.22 +0.7
755,723 - HGI48_RS03575 0.22 -0.6
755,723 - +0.7
755,723 - HGI48_RS03575 0.22 +1.3
755,723 - HGI48_RS03575 0.22 +0.2
755,723 - HGI48_RS03575 0.22 -0.1
755,723 - HGI48_RS03575 0.22 +0.7
755,723 - HGI48_RS03575 0.22 -1.0
755,723 - HGI48_RS03575 0.22 -1.1
755,723 - HGI48_RS03575 0.22 +0.2
755,723 - HGI48_RS03575 0.22 -0.4
755,723 - HGI48_RS03575 0.22 -2.1
755,726 + HGI48_RS03575 0.23 -1.8
755,726 + HGI48_RS03575 0.23 -0.2
755,726 + HGI48_RS03575 0.23 +0.7
755,727 - HGI48_RS03575 0.23 -0.9
755,857 + HGI48_RS03575 0.65 -0.6
755,858 - HGI48_RS03575 0.65 -0.2
755,858 - HGI48_RS03575 0.65 -0.3
755,858 - HGI48_RS03575 0.65 +0.1
755,858 - HGI48_RS03575 0.65 +0.0
755,921 + HGI48_RS03575 0.85 -0.9
755,921 + HGI48_RS03575 0.85 -2.8
755,922 - HGI48_RS03575 0.86 -0.2
755,922 - HGI48_RS03575 0.86 +1.3
755,925 + HGI48_RS03575 0.87 -0.9
755,926 - HGI48_RS03575 0.87 -1.0
755,926 - HGI48_RS03575 0.87 -2.1
755,926 - HGI48_RS03575 0.87 -2.1
755,969 + +1.3
755,970 - +1.0
755,985 + +0.4
755,985 + +0.1
755,986 - -0.4
755,986 - +0.1
755,986 - -0.3
756,164 + +0.4
756,209 + -0.3
756,323 - HGI48_RS03580 0.12 -0.4
756,364 + HGI48_RS03580 0.14 -0.7
756,364 + HGI48_RS03580 0.14 -0.3
756,364 + HGI48_RS03580 0.14 -0.3
756,364 + HGI48_RS03580 0.14 +0.5
756,365 - HGI48_RS03580 0.14 -0.9
756,365 - HGI48_RS03580 0.14 -0.3
756,365 - HGI48_RS03580 0.14 -1.1
756,365 - HGI48_RS03580 0.14 -1.3
756,365 - HGI48_RS03580 0.14 +0.3
756,370 + HGI48_RS03580 0.14 -0.5
756,370 + HGI48_RS03580 0.14 +0.7
756,370 + HGI48_RS03580 0.14 -0.6
756,371 - HGI48_RS03580 0.14 -0.5
756,371 - +0.7
756,520 + HGI48_RS03580 0.22 -1.8
756,521 - HGI48_RS03580 0.22 -0.3
756,523 + HGI48_RS03580 0.22 +0.7
756,523 + HGI48_RS03580 0.22 -0.7
756,562 + HGI48_RS03580 0.24 -0.8
756,562 + HGI48_RS03580 0.24 -0.1
756,562 + HGI48_RS03580 0.24 -0.8
756,563 - HGI48_RS03580 0.24 +0.3
756,563 - HGI48_RS03580 0.24 -0.8
756,586 + HGI48_RS03580 0.25 -0.0
756,586 + HGI48_RS03580 0.25 -0.7
756,586 + HGI48_RS03580 0.25 +1.3
756,586 + HGI48_RS03580 0.25 +0.2
756,586 + HGI48_RS03580 0.25 -0.5
756,587 - HGI48_RS03580 0.25 +0.4
756,623 + HGI48_RS03580 0.27 +0.5
756,623 + HGI48_RS03580 0.27 +0.5
756,623 + HGI48_RS03580 0.27 -1.8
756,623 + HGI48_RS03580 0.27 +0.9
756,624 - HGI48_RS03580 0.27 -0.1
756,624 - HGI48_RS03580 0.27 -1.0
756,624 - HGI48_RS03580 0.27 +0.9
756,624 - HGI48_RS03580 0.27 -0.3
756,624 - HGI48_RS03580 0.27 -0.2
756,624 - HGI48_RS03580 0.27 +0.1
756,624 - HGI48_RS03580 0.27 -2.6
756,624 - HGI48_RS03580 0.27 -0.0
756,718 - HGI48_RS03580 0.32 +0.4
756,718 - HGI48_RS03580 0.32 -0.7
756,815 + HGI48_RS03580 0.37 -0.6
756,856 + HGI48_RS03580 0.39 -0.1
756,857 - HGI48_RS03580 0.39 -1.4

Or see this region's nucleotide sequence