Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03440 and HGI48_RS03445 are separated by 89 nucleotides HGI48_RS03445 and HGI48_RS03450 are separated by 57 nucleotides
HGI48_RS03440: HGI48_RS03440 - site-specific tyrosine recombinase XerD, at 722,531 to 723,430
_RS03440
HGI48_RS03445: HGI48_RS03445 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 723,520 to 724,236
_RS03445
HGI48_RS03450: HGI48_RS03450 - single-stranded-DNA-specific exonuclease RecJ, at 724,294 to 726,024
_RS03450
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 722.623 kb on + strand, within HGI48_RS03440 at 723.221 kb on + strand, within HGI48_RS03440 at 723.368 kb on + strand at 723.506 kb on - strand at 723.513 kb on + strand at 723.514 kb on - strand at 723.533 kb on + strand at 723.533 kb on + strand at 723.534 kb on - strand at 723.536 kb on + strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand at 723.695 kb on - strand, within HGI48_RS03445 at 723.777 kb on + strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.824 kb on - strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.853 kb on - strand, within HGI48_RS03445 at 723.905 kb on + strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.914 kb on - strand, within HGI48_RS03445 at 723.915 kb on + strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.941 kb on - strand, within HGI48_RS03445 at 723.950 kb on - strand, within HGI48_RS03445 at 724.071 kb on + strand, within HGI48_RS03445 at 724.260 kb on - strand at 724.276 kb on + strand at 724.276 kb on + strand at 724.277 kb on - strand at 724.277 kb on - strand at 724.379 kb on - strand at 724.394 kb on + strand at 724.395 kb on - strand at 724.822 kb on - strand, within HGI48_RS03450 at 725.164 kb on - strand, within HGI48_RS03450 at 725.187 kb on + strand, within HGI48_RS03450 at 725.187 kb on + strand, within HGI48_RS03450 at 725.187 kb on + strand, within HGI48_RS03450 at 725.188 kb on - strand, within HGI48_RS03450 at 725.188 kb on - strand, within HGI48_RS03450 at 725.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 722,623 + HGI48_RS03440 0.10 +0.0 723,221 + HGI48_RS03440 0.77 -3.0 723,368 + +0.7 723,506 - -0.9 723,513 + -1.7 723,514 - -0.4 723,533 + -0.1 723,533 + +0.3 723,534 - +1.5 723,536 + -0.9 723,537 - -2.5 723,537 - +0.7 723,537 - -1.7 723,537 - +0.1 723,694 + HGI48_RS03445 0.24 -0.1 723,694 + HGI48_RS03445 0.24 -0.3 723,694 + HGI48_RS03445 0.24 -0.6 723,695 - HGI48_RS03445 0.24 +0.2 723,695 - HGI48_RS03445 0.24 -0.3 723,695 - HGI48_RS03445 0.24 +0.5 723,695 - HGI48_RS03445 0.24 -0.4 723,695 - +2.7 723,695 - HGI48_RS03445 0.24 +0.9 723,777 + HGI48_RS03445 0.36 -1.6 723,778 - HGI48_RS03445 0.36 +0.0 723,778 - HGI48_RS03445 0.36 -1.6 723,824 - HGI48_RS03445 0.42 -1.5 723,852 + HGI48_RS03445 0.46 +0.3 723,852 + HGI48_RS03445 0.46 -0.1 723,852 + HGI48_RS03445 0.46 -0.8 723,853 - HGI48_RS03445 0.46 -1.2 723,905 + HGI48_RS03445 0.54 +0.2 723,906 - HGI48_RS03445 0.54 +0.9 723,906 - HGI48_RS03445 0.54 -1.9 723,914 - HGI48_RS03445 0.55 -1.6 723,915 + HGI48_RS03445 0.55 -0.1 723,916 - HGI48_RS03445 0.55 -0.7 723,916 - HGI48_RS03445 0.55 -1.3 723,941 - HGI48_RS03445 0.59 -1.3 723,950 - HGI48_RS03445 0.60 -1.9 724,071 + HGI48_RS03445 0.77 -0.3 724,260 - +0.2 724,276 + -1.6 724,276 + -0.9 724,277 - -1.3 724,277 - -0.2 724,379 - +1.4 724,394 + -0.0 724,395 - -0.1 724,822 - HGI48_RS03450 0.31 -1.0 725,164 - HGI48_RS03450 0.50 -0.4 725,187 + HGI48_RS03450 0.52 -0.5 725,187 + HGI48_RS03450 0.52 -0.7 725,187 + HGI48_RS03450 0.52 -1.6 725,188 - HGI48_RS03450 0.52 -0.5 725,188 - HGI48_RS03450 0.52 -0.7 725,188 - -0.9
Or see this region's nucleotide sequence