Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03295 and HGI48_RS03300 overlap by 7 nucleotides HGI48_RS03300 and HGI48_RS03305 overlap by 14 nucleotides HGI48_RS03305 and HGI48_RS03310 are separated by 283 nucleotides
HGI48_RS03295: HGI48_RS03295 - SCP2 domain-containing protein, at 696,581 to 697,105
_RS03295
HGI48_RS03300: HGI48_RS03300 - N-acetyltransferase, at 697,099 to 697,602
_RS03300
HGI48_RS03305: HGI48_RS03305 - GIY-YIG nuclease family protein, at 697,589 to 697,891
_RS03305
HGI48_RS03310: HGI48_RS03310 - deoxyribose-phosphate aldolase, at 698,175 to 698,954
_RS03310
Position (kb) 697
698 Strain fitness (log2 ratio) -2
-1
0
1
2 at 696.634 kb on + strand at 696.634 kb on + strand, within HGI48_RS03295 at 696.634 kb on + strand, within HGI48_RS03295 at 696.635 kb on - strand, within HGI48_RS03295 at 696.826 kb on + strand, within HGI48_RS03295 at 696.827 kb on - strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.960 kb on - strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 697.057 kb on - strand at 697.095 kb on + strand at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.265 kb on - strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.379 kb on - strand, within HGI48_RS03300 at 697.379 kb on - strand at 697.444 kb on + strand, within HGI48_RS03300 at 697.444 kb on + strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.448 kb on - strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.528 kb on + strand, within HGI48_RS03300 at 697.577 kb on - strand at 697.622 kb on - strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand at 697.830 kb on + strand at 697.830 kb on + strand, within HGI48_RS03305 at 697.830 kb on + strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.861 kb on - strand at 697.871 kb on + strand at 697.921 kb on + strand at 697.926 kb on + strand at 697.926 kb on + strand at 697.935 kb on - strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.954 kb on - strand at 697.954 kb on - strand at 697.981 kb on + strand at 697.981 kb on + strand at 697.982 kb on - strand at 698.000 kb on + strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.039 kb on - strand at 698.058 kb on + strand at 698.059 kb on - strand at 698.059 kb on - strand at 698.066 kb on + strand at 698.080 kb on + strand at 698.108 kb on + strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.124 kb on + strand at 698.125 kb on - strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.131 kb on - strand at 698.174 kb on + strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.186 kb on - strand at 698.225 kb on - strand at 698.225 kb on - strand at 698.283 kb on - strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.576 kb on - strand, within HGI48_RS03310 at 698.775 kb on - strand, within HGI48_RS03310 at 698.792 kb on - strand at 698.817 kb on + strand, within HGI48_RS03310 at 698.818 kb on - strand, within HGI48_RS03310 at 698.838 kb on - strand, within HGI48_RS03310 at 698.838 kb on - strand, within HGI48_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 696,634 + +0.1 696,634 + HGI48_RS03295 0.10 -1.0 696,634 + HGI48_RS03295 0.10 +0.3 696,635 - HGI48_RS03295 0.10 -0.9 696,826 + HGI48_RS03295 0.47 -0.7 696,827 - HGI48_RS03295 0.47 -0.3 696,959 + HGI48_RS03295 0.72 -1.6 696,959 + HGI48_RS03295 0.72 -1.3 696,959 + HGI48_RS03295 0.72 -1.2 696,959 + HGI48_RS03295 0.72 -2.5 696,959 + HGI48_RS03295 0.72 -0.8 696,960 - HGI48_RS03295 0.72 +0.4 696,997 + HGI48_RS03295 0.79 -0.5 696,997 + HGI48_RS03295 0.79 -0.1 696,997 + HGI48_RS03295 0.79 -0.0 696,998 - HGI48_RS03295 0.79 +0.3 696,998 - HGI48_RS03295 0.79 +0.4 696,998 - HGI48_RS03295 0.79 +0.7 697,057 - -0.4 697,095 + -0.3 697,259 + HGI48_RS03300 0.32 -0.1 697,259 + HGI48_RS03300 0.32 -0.1 697,259 + HGI48_RS03300 0.32 -0.1 697,260 - HGI48_RS03300 0.32 -2.3 697,260 - HGI48_RS03300 0.32 +0.7 697,260 - HGI48_RS03300 0.32 +0.8 697,260 - HGI48_RS03300 0.32 -0.9 697,265 - HGI48_RS03300 0.33 -0.6 697,378 + HGI48_RS03300 0.55 -0.7 697,378 + HGI48_RS03300 0.55 +0.7 697,378 + HGI48_RS03300 0.55 +0.5 697,379 - HGI48_RS03300 0.56 -0.9 697,379 - +1.4 697,444 + HGI48_RS03300 0.68 -1.6 697,444 + HGI48_RS03300 0.68 +0.4 697,445 - HGI48_RS03300 0.69 +0.7 697,445 - HGI48_RS03300 0.69 +0.7 697,447 + HGI48_RS03300 0.69 -0.7 697,447 + HGI48_RS03300 0.69 +1.3 697,447 + HGI48_RS03300 0.69 -0.6 697,448 - HGI48_RS03300 0.69 -1.9 697,489 + HGI48_RS03300 0.77 +0.4 697,489 + HGI48_RS03300 0.77 +0.5 697,489 + HGI48_RS03300 0.77 -0.6 697,489 + HGI48_RS03300 0.77 -1.4 697,490 - HGI48_RS03300 0.78 +0.7 697,490 - HGI48_RS03300 0.78 -0.9 697,490 - HGI48_RS03300 0.78 +0.7 697,528 + HGI48_RS03300 0.85 -0.3 697,577 - -0.1 697,622 - HGI48_RS03305 0.11 +0.3 697,731 + HGI48_RS03305 0.47 +0.7 697,731 + HGI48_RS03305 0.47 +0.7 697,731 + HGI48_RS03305 0.47 -0.3 697,731 + HGI48_RS03305 0.47 +0.1 697,731 + HGI48_RS03305 0.47 +1.8 697,731 + +0.7 697,732 - HGI48_RS03305 0.47 -0.5 697,732 - HGI48_RS03305 0.47 +1.3 697,732 - HGI48_RS03305 0.47 -0.1 697,732 - -0.9 697,830 + +2.4 697,830 + HGI48_RS03305 0.80 +0.1 697,830 + HGI48_RS03305 0.80 +0.9 697,831 - HGI48_RS03305 0.80 -1.6 697,831 - HGI48_RS03305 0.80 +0.7 697,860 + HGI48_RS03305 0.89 -2.1 697,860 + HGI48_RS03305 0.89 -2.6 697,861 - +0.1 697,871 + -0.5 697,921 + +1.1 697,926 + +0.7 697,926 + -0.5 697,935 - -1.3 697,948 + -0.7 697,948 + +0.9 697,948 + +0.1 697,948 + +0.5 697,948 + +0.1 697,949 - +0.5 697,949 - +0.1 697,949 - -0.2 697,949 - -0.1 697,954 - -0.2 697,954 - -2.3 697,981 + +0.1 697,981 + +2.1 697,982 - -0.2 698,000 + -0.3 698,001 - -0.1 698,001 - -1.6 698,001 - -0.4 698,039 - +0.0 698,058 + +0.3 698,059 - +1.3 698,059 - +0.1 698,066 + +0.0 698,080 + +0.3 698,108 + -0.9 698,109 - +1.3 698,109 - +0.3 698,109 - +1.4 698,124 + +0.1 698,125 - -0.3 698,130 + -0.1 698,130 + -1.1 698,131 - -1.6 698,174 + +0.3 698,175 - +0.5 698,175 - +0.1 698,175 - -1.5 698,186 - -0.3 698,225 - +0.7 698,225 - -0.1 698,283 - HGI48_RS03310 0.14 -0.1 698,315 + HGI48_RS03310 0.18 -0.7 698,315 + HGI48_RS03310 0.18 +0.4 698,316 - HGI48_RS03310 0.18 -1.1 698,316 - HGI48_RS03310 0.18 -0.3 698,316 - HGI48_RS03310 0.18 -0.5 698,316 - HGI48_RS03310 0.18 -0.1 698,319 + HGI48_RS03310 0.18 -0.3 698,319 + HGI48_RS03310 0.18 +0.0 698,319 + HGI48_RS03310 0.18 -0.3 698,576 - HGI48_RS03310 0.51 -0.6 698,775 - HGI48_RS03310 0.77 -0.4 698,792 - -0.9 698,817 + HGI48_RS03310 0.82 -0.9 698,818 - HGI48_RS03310 0.82 -2.1 698,838 - HGI48_RS03310 0.85 +0.4 698,838 - HGI48_RS03310 0.85 -0.3
Or see this region's nucleotide sequence