Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03290 and HGI48_RS03295 are separated by 318 nucleotides HGI48_RS03295 and HGI48_RS03300 overlap by 7 nucleotides HGI48_RS03300 and HGI48_RS03305 overlap by 14 nucleotides
HGI48_RS03290: HGI48_RS03290 - U32 family peptidase, at 695,264 to 696,262
_RS03290
HGI48_RS03295: HGI48_RS03295 - SCP2 domain-containing protein, at 696,581 to 697,105
_RS03295
HGI48_RS03300: HGI48_RS03300 - N-acetyltransferase, at 697,099 to 697,602
_RS03300
HGI48_RS03305: HGI48_RS03305 - GIY-YIG nuclease family protein, at 697,589 to 697,891
_RS03305
Position (kb) 696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 695.690 kb on + strand, within HGI48_RS03290 at 695.691 kb on - strand, within HGI48_RS03290 at 695.718 kb on + strand at 695.718 kb on + strand, within HGI48_RS03290 at 695.719 kb on - strand at 695.731 kb on - strand, within HGI48_RS03290 at 695.731 kb on - strand, within HGI48_RS03290 at 695.731 kb on - strand at 695.936 kb on - strand, within HGI48_RS03290 at 695.955 kb on + strand, within HGI48_RS03290 at 695.955 kb on + strand, within HGI48_RS03290 at 695.955 kb on + strand, within HGI48_RS03290 at 696.064 kb on + strand, within HGI48_RS03290 at 696.065 kb on - strand, within HGI48_RS03290 at 696.086 kb on - strand, within HGI48_RS03290 at 696.105 kb on + strand, within HGI48_RS03290 at 696.106 kb on - strand, within HGI48_RS03290 at 696.106 kb on - strand, within HGI48_RS03290 at 696.130 kb on + strand, within HGI48_RS03290 at 696.189 kb on + strand at 696.189 kb on + strand at 696.189 kb on + strand at 696.190 kb on - strand at 696.190 kb on - strand at 696.207 kb on + strand at 696.225 kb on - strand at 696.225 kb on - strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.322 kb on + strand at 696.323 kb on - strand at 696.411 kb on + strand at 696.468 kb on - strand at 696.489 kb on + strand at 696.490 kb on - strand at 696.497 kb on + strand at 696.497 kb on + strand at 696.497 kb on + strand at 696.498 kb on - strand at 696.498 kb on - strand at 696.498 kb on - strand at 696.535 kb on - strand at 696.566 kb on - strand at 696.574 kb on + strand at 696.574 kb on + strand at 696.634 kb on + strand at 696.634 kb on + strand, within HGI48_RS03295 at 696.634 kb on + strand, within HGI48_RS03295 at 696.635 kb on - strand, within HGI48_RS03295 at 696.826 kb on + strand, within HGI48_RS03295 at 696.827 kb on - strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.960 kb on - strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 697.057 kb on - strand at 697.095 kb on + strand at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.265 kb on - strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.379 kb on - strand, within HGI48_RS03300 at 697.379 kb on - strand at 697.444 kb on + strand, within HGI48_RS03300 at 697.444 kb on + strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.448 kb on - strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.528 kb on + strand, within HGI48_RS03300 at 697.577 kb on - strand at 697.622 kb on - strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand at 697.830 kb on + strand at 697.830 kb on + strand, within HGI48_RS03305 at 697.830 kb on + strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.861 kb on - strand at 697.871 kb on + strand at 697.921 kb on + strand at 697.926 kb on + strand at 697.926 kb on + strand at 697.935 kb on - strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.954 kb on - strand at 697.954 kb on - strand at 697.981 kb on + strand at 697.981 kb on + strand at 697.982 kb on - strand at 698.000 kb on + strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.039 kb on - strand at 698.058 kb on + strand at 698.059 kb on - strand at 698.059 kb on - strand at 698.066 kb on + strand at 698.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 695,690 + HGI48_RS03290 0.43 +0.2 695,691 - HGI48_RS03290 0.43 -0.9 695,718 + -0.9 695,718 + HGI48_RS03290 0.45 -1.1 695,719 - +1.3 695,731 - HGI48_RS03290 0.47 -0.3 695,731 - HGI48_RS03290 0.47 +0.7 695,731 - +2.1 695,936 - HGI48_RS03290 0.67 -0.4 695,955 + HGI48_RS03290 0.69 -0.1 695,955 + HGI48_RS03290 0.69 -1.3 695,955 + HGI48_RS03290 0.69 -0.7 696,064 + HGI48_RS03290 0.80 -2.1 696,065 - HGI48_RS03290 0.80 -1.3 696,086 - HGI48_RS03290 0.82 -0.3 696,105 + HGI48_RS03290 0.84 -3.2 696,106 - HGI48_RS03290 0.84 +0.2 696,106 - HGI48_RS03290 0.84 -0.5 696,130 + HGI48_RS03290 0.87 -0.6 696,189 + -0.1 696,189 + -1.6 696,189 + -0.5 696,190 - -3.3 696,190 - -1.3 696,207 + -1.4 696,225 - -0.2 696,225 - +0.3 696,266 + -0.3 696,266 + +0.7 696,266 + -1.3 696,266 + -0.3 696,266 + +0.3 696,267 - -0.3 696,267 - -2.6 696,267 - +0.1 696,267 - -1.0 696,267 - -0.6 696,267 - -0.8 696,267 - -1.3 696,322 + -0.3 696,323 - -0.1 696,411 + +0.7 696,468 - -0.5 696,489 + +0.4 696,490 - +3.0 696,497 + -0.3 696,497 + +0.4 696,497 + +0.5 696,498 - +0.6 696,498 - -0.3 696,498 - -0.3 696,535 - +0.3 696,566 - +0.7 696,574 + -0.1 696,574 + +0.4 696,634 + +0.1 696,634 + HGI48_RS03295 0.10 -1.0 696,634 + HGI48_RS03295 0.10 +0.3 696,635 - HGI48_RS03295 0.10 -0.9 696,826 + HGI48_RS03295 0.47 -0.7 696,827 - HGI48_RS03295 0.47 -0.3 696,959 + HGI48_RS03295 0.72 -1.6 696,959 + HGI48_RS03295 0.72 -1.3 696,959 + HGI48_RS03295 0.72 -1.2 696,959 + HGI48_RS03295 0.72 -2.5 696,959 + HGI48_RS03295 0.72 -0.8 696,960 - HGI48_RS03295 0.72 +0.4 696,997 + HGI48_RS03295 0.79 -0.5 696,997 + HGI48_RS03295 0.79 -0.1 696,997 + HGI48_RS03295 0.79 -0.0 696,998 - HGI48_RS03295 0.79 +0.3 696,998 - HGI48_RS03295 0.79 +0.4 696,998 - HGI48_RS03295 0.79 +0.7 697,057 - -0.4 697,095 + -0.3 697,259 + HGI48_RS03300 0.32 -0.1 697,259 + HGI48_RS03300 0.32 -0.1 697,259 + HGI48_RS03300 0.32 -0.1 697,260 - HGI48_RS03300 0.32 -2.3 697,260 - HGI48_RS03300 0.32 +0.7 697,260 - HGI48_RS03300 0.32 +0.8 697,260 - HGI48_RS03300 0.32 -0.9 697,265 - HGI48_RS03300 0.33 -0.6 697,378 + HGI48_RS03300 0.55 -0.7 697,378 + HGI48_RS03300 0.55 +0.7 697,378 + HGI48_RS03300 0.55 +0.5 697,379 - HGI48_RS03300 0.56 -0.9 697,379 - +1.4 697,444 + HGI48_RS03300 0.68 -1.6 697,444 + HGI48_RS03300 0.68 +0.4 697,445 - HGI48_RS03300 0.69 +0.7 697,445 - HGI48_RS03300 0.69 +0.7 697,447 + HGI48_RS03300 0.69 -0.7 697,447 + HGI48_RS03300 0.69 +1.3 697,447 + HGI48_RS03300 0.69 -0.6 697,448 - HGI48_RS03300 0.69 -1.9 697,489 + HGI48_RS03300 0.77 +0.4 697,489 + HGI48_RS03300 0.77 +0.5 697,489 + HGI48_RS03300 0.77 -0.6 697,489 + HGI48_RS03300 0.77 -1.4 697,490 - HGI48_RS03300 0.78 +0.7 697,490 - HGI48_RS03300 0.78 -0.9 697,490 - HGI48_RS03300 0.78 +0.7 697,528 + HGI48_RS03300 0.85 -0.3 697,577 - -0.1 697,622 - HGI48_RS03305 0.11 +0.3 697,731 + HGI48_RS03305 0.47 +0.7 697,731 + HGI48_RS03305 0.47 +0.7 697,731 + HGI48_RS03305 0.47 -0.3 697,731 + HGI48_RS03305 0.47 +0.1 697,731 + HGI48_RS03305 0.47 +1.8 697,731 + +0.7 697,732 - HGI48_RS03305 0.47 -0.5 697,732 - HGI48_RS03305 0.47 +1.3 697,732 - HGI48_RS03305 0.47 -0.1 697,732 - -0.9 697,830 + +2.4 697,830 + HGI48_RS03305 0.80 +0.1 697,830 + HGI48_RS03305 0.80 +0.9 697,831 - HGI48_RS03305 0.80 -1.6 697,831 - HGI48_RS03305 0.80 +0.7 697,860 + HGI48_RS03305 0.89 -2.1 697,860 + HGI48_RS03305 0.89 -2.6 697,861 - +0.1 697,871 + -0.5 697,921 + +1.1 697,926 + +0.7 697,926 + -0.5 697,935 - -1.3 697,948 + -0.7 697,948 + +0.9 697,948 + +0.1 697,948 + +0.5 697,948 + +0.1 697,949 - +0.5 697,949 - +0.1 697,949 - -0.2 697,949 - -0.1 697,954 - -0.2 697,954 - -2.3 697,981 + +0.1 697,981 + +2.1 697,982 - -0.2 698,000 + -0.3 698,001 - -0.1 698,001 - -1.6 698,001 - -0.4 698,039 - +0.0 698,058 + +0.3 698,059 - +1.3 698,059 - +0.1 698,066 + +0.0 698,080 + +0.3
Or see this region's nucleotide sequence