Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03065 and HGI48_RS03070 are separated by 59 nucleotides HGI48_RS03070 and HGI48_RS03075 are separated by 14 nucleotides HGI48_RS03075 and HGI48_RS03080 overlap by 8 nucleotides HGI48_RS03080 and HGI48_RS03085 overlap by 4 nucleotides HGI48_RS03085 and HGI48_RS03090 overlap by 4 nucleotides
HGI48_RS03065: HGI48_RS03065 - phage major tail tube protein, at 652,474 to 652,989
_RS03065
HGI48_RS03070: HGI48_RS03070 - phage tail assembly protein, at 653,049 to 653,351
_RS03070
HGI48_RS03075: HGI48_RS03075 - GpE family phage tail protein, at 653,366 to 653,485
_RS03075
HGI48_RS03080: HGI48_RS03080 - phage tail tape measure protein, at 653,478 to 656,318
_RS03080
HGI48_RS03085: HGI48_RS03085 - phage tail protein, at 656,315 to 656,848
_RS03085
HGI48_RS03090: HGI48_RS03090 - phage late control D family protein, at 656,845 to 657,954
_RS03090
Position (kb) 653
654
655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.499 kb on - strand at 652.617 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.876 kb on + strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.923 kb on + strand, within HGI48_RS03065 at 652.923 kb on + strand at 652.987 kb on + strand at 652.987 kb on + strand at 653.031 kb on + strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.037 kb on - strand at 653.141 kb on + strand, within HGI48_RS03070 at 653.142 kb on - strand, within HGI48_RS03070 at 653.225 kb on + strand, within HGI48_RS03070 at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.487 kb on - strand at 653.487 kb on - strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.525 kb on + strand at 653.679 kb on - strand at 653.807 kb on + strand, within HGI48_RS03080 at 653.807 kb on + strand, within HGI48_RS03080 at 653.808 kb on - strand, within HGI48_RS03080 at 653.808 kb on - strand at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 654.114 kb on + strand, within HGI48_RS03080 at 654.115 kb on - strand, within HGI48_RS03080 at 654.334 kb on - strand, within HGI48_RS03080 at 654.459 kb on + strand, within HGI48_RS03080 at 654.470 kb on - strand, within HGI48_RS03080 at 654.470 kb on - strand, within HGI48_RS03080 at 654.524 kb on + strand, within HGI48_RS03080 at 654.524 kb on + strand, within HGI48_RS03080 at 654.525 kb on - strand, within HGI48_RS03080 at 654.525 kb on - strand, within HGI48_RS03080 at 654.527 kb on + strand, within HGI48_RS03080 at 654.528 kb on - strand at 654.594 kb on - strand, within HGI48_RS03080 at 654.594 kb on - strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.756 kb on + strand, within HGI48_RS03080 at 654.757 kb on - strand, within HGI48_RS03080 at 654.937 kb on + strand, within HGI48_RS03080 at 654.938 kb on - strand, within HGI48_RS03080 at 654.938 kb on - strand, within HGI48_RS03080 at 654.965 kb on + strand, within HGI48_RS03080 at 654.965 kb on + strand, within HGI48_RS03080 at 654.965 kb on + strand, within HGI48_RS03080 at 654.966 kb on - strand, within HGI48_RS03080 at 654.992 kb on + strand, within HGI48_RS03080 at 655.125 kb on - strand, within HGI48_RS03080 at 655.125 kb on - strand, within HGI48_RS03080 at 655.229 kb on + strand, within HGI48_RS03080 at 655.229 kb on + strand, within HGI48_RS03080 at 655.229 kb on + strand, within HGI48_RS03080 at 655.230 kb on - strand, within HGI48_RS03080 at 655.246 kb on + strand at 655.310 kb on + strand, within HGI48_RS03080 at 655.505 kb on - strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.900 kb on - strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 656.003 kb on + strand, within HGI48_RS03080 at 656.112 kb on + strand at 656.113 kb on - strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.183 kb on + strand at 656.183 kb on + strand at 656.184 kb on - strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.324 kb on - strand at 656.326 kb on + strand at 656.326 kb on + strand at 656.327 kb on - strand at 656.327 kb on - strand at 656.368 kb on - strand at 656.413 kb on + strand, within HGI48_RS03085 at 656.414 kb on - strand, within HGI48_RS03085 at 656.432 kb on - strand, within HGI48_RS03085 at 656.610 kb on - strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.619 kb on - strand at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand at 656.710 kb on - strand at 656.967 kb on + strand, within HGI48_RS03090 at 656.999 kb on + strand, within HGI48_RS03090 at 657.000 kb on - strand, within HGI48_RS03090 at 657.000 kb on - strand, within HGI48_RS03090 at 657.055 kb on - strand at 657.079 kb on + strand, within HGI48_RS03090 at 657.080 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 652,499 - -0.7 652,617 + HGI48_RS03065 0.28 +1.4 652,743 + HGI48_RS03065 0.52 -0.2 652,743 + HGI48_RS03065 0.52 -0.0 652,873 + HGI48_RS03065 0.77 -1.9 652,873 + HGI48_RS03065 0.77 +0.0 652,874 - HGI48_RS03065 0.78 -1.3 652,874 - HGI48_RS03065 0.78 -1.2 652,874 - HGI48_RS03065 0.78 -1.3 652,874 - HGI48_RS03065 0.78 -0.6 652,876 + HGI48_RS03065 0.78 +0.1 652,877 - HGI48_RS03065 0.78 -0.2 652,877 - HGI48_RS03065 0.78 -1.3 652,923 + HGI48_RS03065 0.87 +0.4 652,923 + -0.3 652,987 + -0.2 652,987 + +0.1 653,031 + -0.4 653,032 - -0.6 653,032 - -1.3 653,032 - -0.6 653,037 - -0.3 653,141 + HGI48_RS03070 0.30 +0.2 653,142 - HGI48_RS03070 0.31 +0.3 653,225 + HGI48_RS03070 0.58 +0.4 653,483 + -0.2 653,483 + -0.1 653,483 + -0.3 653,483 + -2.0 653,483 + +1.0 653,484 - +0.3 653,484 - -0.0 653,484 - +2.9 653,484 - +0.4 653,484 - +0.4 653,484 - -1.8 653,487 - +0.1 653,487 - -1.3 653,521 + -1.3 653,521 + +0.7 653,521 + +1.0 653,522 - -0.3 653,522 - -1.9 653,522 - -2.3 653,522 - -1.1 653,525 + +1.2 653,679 - -0.9 653,807 + HGI48_RS03080 0.12 -1.9 653,807 + HGI48_RS03080 0.12 +1.3 653,808 - HGI48_RS03080 0.12 +0.2 653,808 - +1.4 653,811 + HGI48_RS03080 0.12 -0.3 653,811 + HGI48_RS03080 0.12 -0.7 653,811 + HGI48_RS03080 0.12 -1.3 653,811 + HGI48_RS03080 0.12 -1.3 653,811 + HGI48_RS03080 0.12 +0.4 653,812 - HGI48_RS03080 0.12 -1.0 653,812 - HGI48_RS03080 0.12 -0.0 653,812 - HGI48_RS03080 0.12 -0.3 653,812 - HGI48_RS03080 0.12 +0.5 653,812 - HGI48_RS03080 0.12 -2.1 653,812 - HGI48_RS03080 0.12 -0.3 654,114 + HGI48_RS03080 0.22 -0.2 654,115 - HGI48_RS03080 0.22 -0.0 654,334 - HGI48_RS03080 0.30 -1.3 654,459 + HGI48_RS03080 0.35 +0.5 654,470 - HGI48_RS03080 0.35 +0.2 654,470 - HGI48_RS03080 0.35 +0.5 654,524 + HGI48_RS03080 0.37 +0.1 654,524 + HGI48_RS03080 0.37 -1.5 654,525 - HGI48_RS03080 0.37 -1.3 654,525 - HGI48_RS03080 0.37 +0.4 654,527 + HGI48_RS03080 0.37 -0.4 654,528 - +0.7 654,594 - HGI48_RS03080 0.39 -0.9 654,594 - HGI48_RS03080 0.39 -0.9 654,704 + HGI48_RS03080 0.43 -0.2 654,704 + HGI48_RS03080 0.43 +0.6 654,704 + HGI48_RS03080 0.43 -0.8 654,704 + HGI48_RS03080 0.43 -0.0 654,704 + HGI48_RS03080 0.43 -0.6 654,704 + HGI48_RS03080 0.43 -0.7 654,756 + HGI48_RS03080 0.45 -0.9 654,757 - HGI48_RS03080 0.45 +0.9 654,937 + HGI48_RS03080 0.51 +0.8 654,938 - HGI48_RS03080 0.51 +0.3 654,938 - HGI48_RS03080 0.51 -0.8 654,965 + HGI48_RS03080 0.52 +1.0 654,965 + HGI48_RS03080 0.52 +0.7 654,965 + HGI48_RS03080 0.52 -0.1 654,966 - HGI48_RS03080 0.52 +0.4 654,992 + HGI48_RS03080 0.53 +0.3 655,125 - HGI48_RS03080 0.58 -0.1 655,125 - HGI48_RS03080 0.58 +0.5 655,229 + HGI48_RS03080 0.62 -0.5 655,229 + HGI48_RS03080 0.62 -0.3 655,229 + HGI48_RS03080 0.62 -0.1 655,230 - HGI48_RS03080 0.62 -0.3 655,246 + +0.7 655,310 + HGI48_RS03080 0.64 +2.0 655,505 - HGI48_RS03080 0.71 -0.3 655,568 + HGI48_RS03080 0.74 +0.1 655,568 + HGI48_RS03080 0.74 -1.9 655,568 + HGI48_RS03080 0.74 +1.8 655,568 + HGI48_RS03080 0.74 -0.3 655,568 + HGI48_RS03080 0.74 -1.6 655,568 + +0.7 655,568 + HGI48_RS03080 0.74 -0.9 655,568 + HGI48_RS03080 0.74 -1.9 655,569 - HGI48_RS03080 0.74 +0.6 655,569 - HGI48_RS03080 0.74 -0.1 655,569 - HGI48_RS03080 0.74 -1.9 655,569 - HGI48_RS03080 0.74 +1.8 655,569 - HGI48_RS03080 0.74 -0.3 655,569 - HGI48_RS03080 0.74 -0.0 655,569 - HGI48_RS03080 0.74 +0.8 655,569 - HGI48_RS03080 0.74 -0.8 655,569 - HGI48_RS03080 0.74 +0.8 655,569 - HGI48_RS03080 0.74 -1.0 655,569 - HGI48_RS03080 0.74 -0.3 655,900 - HGI48_RS03080 0.85 -1.1 655,920 + HGI48_RS03080 0.86 +0.4 655,920 + HGI48_RS03080 0.86 -1.0 655,920 + HGI48_RS03080 0.86 -2.0 655,920 + HGI48_RS03080 0.86 -0.5 655,920 + HGI48_RS03080 0.86 +0.7 655,920 + HGI48_RS03080 0.86 -0.0 655,920 + HGI48_RS03080 0.86 +0.5 655,920 + HGI48_RS03080 0.86 -0.7 655,920 + HGI48_RS03080 0.86 +0.4 655,920 + HGI48_RS03080 0.86 -1.2 655,920 + HGI48_RS03080 0.86 -0.5 655,921 - HGI48_RS03080 0.86 +0.6 655,921 - HGI48_RS03080 0.86 -0.6 655,921 - HGI48_RS03080 0.86 +0.8 655,921 - HGI48_RS03080 0.86 -0.0 655,921 - -0.9 655,921 - HGI48_RS03080 0.86 -0.3 655,921 - HGI48_RS03080 0.86 -1.4 655,921 - HGI48_RS03080 0.86 +0.1 655,921 - HGI48_RS03080 0.86 -0.6 655,921 - HGI48_RS03080 0.86 +1.1 655,921 - HGI48_RS03080 0.86 +0.4 655,921 - HGI48_RS03080 0.86 -1.1 655,921 - HGI48_RS03080 0.86 -0.4 656,003 + HGI48_RS03080 0.89 +1.0 656,112 + -0.7 656,113 - -0.9 656,165 + +1.0 656,165 + +0.2 656,165 + +0.7 656,165 + -0.3 656,166 - -1.6 656,166 - -0.6 656,166 - -0.7 656,166 - -2.8 656,166 - +0.7 656,183 + +1.3 656,183 + -0.5 656,184 - +0.3 656,323 + -0.3 656,323 + -0.3 656,323 + -0.3 656,323 + -0.9 656,323 + -0.0 656,324 - -0.3 656,326 + +1.1 656,326 + +0.5 656,327 - +1.3 656,327 - +0.7 656,368 - -2.1 656,413 + HGI48_RS03085 0.18 +0.6 656,414 - HGI48_RS03085 0.19 +1.7 656,432 - HGI48_RS03085 0.22 -1.8 656,610 - HGI48_RS03085 0.55 -1.3 656,618 + -0.9 656,618 + HGI48_RS03085 0.57 -0.5 656,618 + HGI48_RS03085 0.57 +0.7 656,618 + -0.3 656,618 + HGI48_RS03085 0.57 -0.1 656,618 + HGI48_RS03085 0.57 +0.9 656,618 + HGI48_RS03085 0.57 -2.8 656,618 + +0.1 656,618 + HGI48_RS03085 0.57 -0.0 656,618 + HGI48_RS03085 0.57 +0.4 656,618 + HGI48_RS03085 0.57 +0.7 656,618 + HGI48_RS03085 0.57 -0.0 656,618 + HGI48_RS03085 0.57 -1.0 656,618 + HGI48_RS03085 0.57 -0.2 656,618 + HGI48_RS03085 0.57 +0.3 656,618 + HGI48_RS03085 0.57 -1.3 656,618 + HGI48_RS03085 0.57 +1.1 656,618 + HGI48_RS03085 0.57 -0.3 656,618 + HGI48_RS03085 0.57 -0.3 656,618 + HGI48_RS03085 0.57 +0.3 656,618 + HGI48_RS03085 0.57 +0.3 656,618 + HGI48_RS03085 0.57 +0.3 656,618 + HGI48_RS03085 0.57 -0.1 656,619 - +1.7 656,619 - HGI48_RS03085 0.57 -1.0 656,619 - HGI48_RS03085 0.57 +1.0 656,619 - HGI48_RS03085 0.57 -0.2 656,619 - HGI48_RS03085 0.57 -1.3 656,619 - HGI48_RS03085 0.57 +0.3 656,619 - HGI48_RS03085 0.57 +2.0 656,619 - HGI48_RS03085 0.57 -0.5 656,619 - HGI48_RS03085 0.57 -1.3 656,619 - HGI48_RS03085 0.57 +0.7 656,619 - HGI48_RS03085 0.57 -0.6 656,619 - HGI48_RS03085 0.57 -0.0 656,619 - HGI48_RS03085 0.57 -0.3 656,619 - HGI48_RS03085 0.57 +0.7 656,619 - HGI48_RS03085 0.57 -0.9 656,619 - HGI48_RS03085 0.57 -0.1 656,619 - HGI48_RS03085 0.57 +0.3 656,700 + HGI48_RS03085 0.72 -1.9 656,700 + HGI48_RS03085 0.72 -1.6 656,700 + HGI48_RS03085 0.72 +0.7 656,701 - HGI48_RS03085 0.72 -0.2 656,701 - HGI48_RS03085 0.72 -0.3 656,701 - HGI48_RS03085 0.72 -1.6 656,701 - +1.4 656,710 - +0.1 656,967 + HGI48_RS03090 0.11 -2.1 656,999 + HGI48_RS03090 0.14 +0.1 657,000 - HGI48_RS03090 0.14 +0.4 657,000 - HGI48_RS03090 0.14 -0.9 657,055 - +0.7 657,079 + HGI48_RS03090 0.21 +0.3 657,080 - HGI48_RS03090 0.21 -0.9 657,310 - HGI48_RS03090 0.42 -0.1 657,310 - HGI48_RS03090 0.42 -0.9 657,310 - HGI48_RS03090 0.42 +0.4
Or see this region's nucleotide sequence