Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03010 and HGI48_RS03015 overlap by 4 nucleotides HGI48_RS03015 and HGI48_RS03020 are separated by 77 nucleotides HGI48_RS03020 and HGI48_RS03025 overlap by 8 nucleotides HGI48_RS03025 and HGI48_RS03030 are separated by 124 nucleotides HGI48_RS03030 and HGI48_RS03035 overlap by 4 nucleotides
HGI48_RS03010: HGI48_RS03010 - glycoside hydrolase family 104 protein, at 644,491 to 644,982
_RS03010
HGI48_RS03015: HGI48_RS03015 - LysB family phage lysis regulatory protein, at 644,979 to 645,428
_RS03015
HGI48_RS03020: HGI48_RS03020 - phage tail protein, at 645,506 to 645,937
_RS03020
HGI48_RS03025: HGI48_RS03025 - phage virion morphogenesis protein, at 645,930 to 646,373
_RS03025
HGI48_RS03030: HGI48_RS03030 - phage baseplate assembly protein V, at 646,498 to 647,031
_RS03030
HGI48_RS03035: HGI48_RS03035 - GPW/gp25 family protein, at 647,028 to 647,378
_RS03035
Position (kb) 645
646
647 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.953 kb on + strand at 644.953 kb on + strand at 644.954 kb on - strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.017 kb on - strand at 645.017 kb on - strand at 645.017 kb on - strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand at 645.305 kb on + strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand at 645.309 kb on - strand, within HGI48_RS03015 at 645.487 kb on - strand at 645.487 kb on - strand at 645.523 kb on - strand at 645.525 kb on + strand at 645.525 kb on + strand at 645.526 kb on - strand at 645.537 kb on + strand at 645.538 kb on - strand at 645.538 kb on - strand at 645.541 kb on + strand at 645.542 kb on - strand at 645.542 kb on - strand at 645.554 kb on + strand, within HGI48_RS03020 at 645.555 kb on - strand, within HGI48_RS03020 at 645.565 kb on + strand, within HGI48_RS03020 at 645.565 kb on + strand, within HGI48_RS03020 at 645.641 kb on + strand, within HGI48_RS03020 at 645.641 kb on + strand at 645.648 kb on - strand, within HGI48_RS03020 at 645.648 kb on - strand, within HGI48_RS03020 at 645.674 kb on + strand, within HGI48_RS03020 at 645.674 kb on + strand at 645.675 kb on - strand, within HGI48_RS03020 at 645.694 kb on - strand at 645.729 kb on - strand, within HGI48_RS03020 at 645.915 kb on - strand at 645.921 kb on + strand at 645.921 kb on + strand at 645.921 kb on + strand at 645.922 kb on - strand at 645.922 kb on - strand at 645.922 kb on - strand at 645.998 kb on + strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 646.018 kb on + strand at 646.030 kb on + strand, within HGI48_RS03025 at 646.030 kb on + strand at 646.031 kb on - strand, within HGI48_RS03025 at 646.115 kb on + strand, within HGI48_RS03025 at 646.115 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.167 kb on + strand, within HGI48_RS03025 at 646.293 kb on + strand at 646.294 kb on - strand, within HGI48_RS03025 at 646.294 kb on - strand, within HGI48_RS03025 at 646.395 kb on + strand at 646.395 kb on + strand at 646.395 kb on + strand at 646.395 kb on + strand at 646.395 kb on + strand at 646.396 kb on - strand at 646.419 kb on + strand at 646.435 kb on + strand at 646.435 kb on + strand at 646.435 kb on + strand at 646.447 kb on + strand at 646.476 kb on + strand at 646.477 kb on - strand at 646.611 kb on - strand at 646.704 kb on + strand, within HGI48_RS03030 at 646.780 kb on - strand, within HGI48_RS03030 at 646.825 kb on + strand, within HGI48_RS03030 at 646.825 kb on + strand, within HGI48_RS03030 at 646.957 kb on - strand, within HGI48_RS03030 at 646.970 kb on + strand, within HGI48_RS03030 at 646.970 kb on + strand, within HGI48_RS03030 at 646.970 kb on + strand, within HGI48_RS03030 at 646.970 kb on + strand, within HGI48_RS03030 at 646.971 kb on - strand, within HGI48_RS03030 at 646.971 kb on - strand, within HGI48_RS03030 at 646.971 kb on - strand, within HGI48_RS03030 at 646.971 kb on - strand, within HGI48_RS03030 at 646.971 kb on - strand at 646.971 kb on - strand, within HGI48_RS03030 at 646.971 kb on - strand, within HGI48_RS03030 at 646.974 kb on + strand, within HGI48_RS03030 at 646.974 kb on + strand, within HGI48_RS03030 at 646.974 kb on + strand, within HGI48_RS03030 at 646.975 kb on - strand, within HGI48_RS03030 at 646.975 kb on - strand, within HGI48_RS03030 at 646.994 kb on + strand at 646.995 kb on - strand at 647.011 kb on - strand at 647.011 kb on - strand at 647.011 kb on - strand at 647.038 kb on - strand at 647.038 kb on - strand at 647.226 kb on + strand, within HGI48_RS03035 at 647.226 kb on + strand, within HGI48_RS03035 at 647.226 kb on + strand, within HGI48_RS03035 at 647.226 kb on + strand, within HGI48_RS03035 at 647.226 kb on + strand, within HGI48_RS03035 at 647.226 kb on + strand at 647.226 kb on + strand, within HGI48_RS03035 at 647.227 kb on - strand, within HGI48_RS03035 at 647.227 kb on - strand, within HGI48_RS03035 at 647.227 kb on - strand, within HGI48_RS03035 at 647.227 kb on - strand, within HGI48_RS03035
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 644,953 + -0.9 644,953 + +0.1 644,954 - -0.0 645,016 + -0.3 645,016 + +2.5 645,016 + -0.1 645,016 + -1.1 645,016 + +0.5 645,017 - -0.3 645,017 - +1.4 645,017 - -0.4 645,305 + HGI48_RS03015 0.72 +0.4 645,305 + HGI48_RS03015 0.72 -0.6 645,305 + HGI48_RS03015 0.72 +0.1 645,305 + -0.3 645,305 + HGI48_RS03015 0.72 -0.3 645,305 + +1.7 645,305 + +1.1 645,305 + HGI48_RS03015 0.72 -0.3 645,305 + HGI48_RS03015 0.72 +1.0 645,306 - HGI48_RS03015 0.73 -0.3 645,306 - HGI48_RS03015 0.73 -0.4 645,306 - -0.9 645,306 - HGI48_RS03015 0.73 +0.4 645,306 - +0.7 645,309 - HGI48_RS03015 0.73 -1.2 645,487 - +1.7 645,487 - +0.7 645,523 - -0.3 645,525 + +0.8 645,525 + -0.9 645,526 - +0.1 645,537 + +0.1 645,538 - -0.3 645,538 - -0.3 645,541 + +0.1 645,542 - +1.4 645,542 - -0.3 645,554 + HGI48_RS03020 0.11 -1.5 645,555 - HGI48_RS03020 0.11 +0.5 645,565 + HGI48_RS03020 0.14 -1.4 645,565 + HGI48_RS03020 0.14 +0.0 645,641 + HGI48_RS03020 0.31 +0.4 645,641 + -0.9 645,648 - HGI48_RS03020 0.33 -0.7 645,648 - HGI48_RS03020 0.33 -0.0 645,674 + HGI48_RS03020 0.39 -1.3 645,674 + +0.1 645,675 - HGI48_RS03020 0.39 -1.0 645,694 - -0.9 645,729 - HGI48_RS03020 0.52 -0.9 645,915 - -2.3 645,921 + +0.3 645,921 + -0.9 645,921 + +0.3 645,922 - +1.4 645,922 - -0.3 645,922 - +0.5 645,998 + HGI48_RS03025 0.15 +1.0 645,999 - HGI48_RS03025 0.16 -0.7 645,999 - HGI48_RS03025 0.16 +0.5 645,999 - HGI48_RS03025 0.16 +0.5 645,999 - HGI48_RS03025 0.16 -0.6 646,018 + +1.9 646,030 + HGI48_RS03025 0.23 -0.9 646,030 + -0.9 646,031 - HGI48_RS03025 0.23 -2.1 646,115 + HGI48_RS03025 0.42 -0.3 646,115 + HGI48_RS03025 0.42 -0.9 646,153 + HGI48_RS03025 0.50 -0.5 646,153 + HGI48_RS03025 0.50 +0.1 646,153 + +2.0 646,153 + HGI48_RS03025 0.50 -1.9 646,153 + HGI48_RS03025 0.50 -0.4 646,153 + HGI48_RS03025 0.50 +0.1 646,154 - HGI48_RS03025 0.50 -0.5 646,154 - HGI48_RS03025 0.50 -0.7 646,154 - HGI48_RS03025 0.50 +1.3 646,154 - HGI48_RS03025 0.50 -1.6 646,154 - HGI48_RS03025 0.50 +0.0 646,167 + HGI48_RS03025 0.53 +1.0 646,293 + +2.3 646,294 - HGI48_RS03025 0.82 -0.0 646,294 - HGI48_RS03025 0.82 -1.9 646,395 + -0.9 646,395 + -1.5 646,395 + -1.0 646,395 + -0.1 646,395 + -0.1 646,396 - +2.3 646,419 + -0.1 646,435 + +1.5 646,435 + -0.0 646,435 + +0.7 646,447 + -2.1 646,476 + -0.3 646,477 - -0.9 646,611 - -0.9 646,704 + HGI48_RS03030 0.39 +1.3 646,780 - HGI48_RS03030 0.53 -1.2 646,825 + HGI48_RS03030 0.61 +0.9 646,825 + HGI48_RS03030 0.61 -1.0 646,957 - HGI48_RS03030 0.86 -0.6 646,970 + HGI48_RS03030 0.88 +1.3 646,970 + HGI48_RS03030 0.88 -0.7 646,970 + HGI48_RS03030 0.88 +0.7 646,970 + HGI48_RS03030 0.88 +1.5 646,971 - HGI48_RS03030 0.89 +0.2 646,971 - HGI48_RS03030 0.89 +0.4 646,971 - HGI48_RS03030 0.89 +0.7 646,971 - HGI48_RS03030 0.89 -0.9 646,971 - +2.0 646,971 - HGI48_RS03030 0.89 +0.2 646,971 - HGI48_RS03030 0.89 +0.3 646,974 + HGI48_RS03030 0.89 -1.3 646,974 + HGI48_RS03030 0.89 -0.6 646,974 + HGI48_RS03030 0.89 -0.7 646,975 - HGI48_RS03030 0.89 +0.4 646,975 - HGI48_RS03030 0.89 -1.9 646,994 + -0.1 646,995 - -0.3 647,011 - +0.3 647,011 - -0.3 647,011 - -0.4 647,038 - +1.2 647,038 - -0.6 647,226 + HGI48_RS03035 0.56 +0.9 647,226 + HGI48_RS03035 0.56 -0.3 647,226 + HGI48_RS03035 0.56 +1.2 647,226 + HGI48_RS03035 0.56 -0.0 647,226 + HGI48_RS03035 0.56 +0.3 647,226 + +1.4 647,226 + HGI48_RS03035 0.56 -0.6 647,227 - HGI48_RS03035 0.57 -1.6 647,227 - HGI48_RS03035 0.57 +1.1 647,227 - HGI48_RS03035 0.57 +0.7 647,227 - HGI48_RS03035 0.57 -0.1
Or see this region's nucleotide sequence