Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02995 and HGI48_RS03000 overlap by 1 nucleotides HGI48_RS03000 and HGI48_RS03005 are separated by 3 nucleotides HGI48_RS03005 and HGI48_RS03010 overlap by 14 nucleotides HGI48_RS03010 and HGI48_RS03015 overlap by 4 nucleotides HGI48_RS03015 and HGI48_RS03020 are separated by 77 nucleotides HGI48_RS03020 and HGI48_RS03025 overlap by 8 nucleotides
HGI48_RS02995: HGI48_RS02995 - head completion/stabilization protein, at 643,537 to 644,001
_RS02995
HGI48_RS03000: HGI48_RS03000 - tail protein X, at 644,001 to 644,204
_RS03000
HGI48_RS03005: HGI48_RS03005 - phage holin family protein, at 644,208 to 644,504
_RS03005
HGI48_RS03010: HGI48_RS03010 - glycoside hydrolase family 104 protein, at 644,491 to 644,982
_RS03010
HGI48_RS03015: HGI48_RS03015 - LysB family phage lysis regulatory protein, at 644,979 to 645,428
_RS03015
HGI48_RS03020: HGI48_RS03020 - phage tail protein, at 645,506 to 645,937
_RS03020
HGI48_RS03025: HGI48_RS03025 - phage virion morphogenesis protein, at 645,930 to 646,373
_RS03025
Position (kb) 644
645
646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.000 kb on - strand at 644.000 kb on - strand at 644.207 kb on + strand at 644.207 kb on + strand at 644.208 kb on - strand at 644.208 kb on - strand at 644.208 kb on - strand at 644.228 kb on + strand at 644.229 kb on - strand at 644.229 kb on - strand at 644.502 kb on + strand at 644.503 kb on - strand at 644.717 kb on - strand, within HGI48_RS03010 at 644.728 kb on + strand, within HGI48_RS03010 at 644.728 kb on + strand, within HGI48_RS03010 at 644.729 kb on - strand, within HGI48_RS03010 at 644.729 kb on - strand, within HGI48_RS03010 at 644.729 kb on - strand at 644.746 kb on + strand at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.748 kb on + strand, within HGI48_RS03010 at 644.748 kb on + strand, within HGI48_RS03010 at 644.841 kb on - strand, within HGI48_RS03010 at 644.853 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.881 kb on - strand, within HGI48_RS03010 at 644.953 kb on + strand at 644.953 kb on + strand at 644.954 kb on - strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.017 kb on - strand at 645.017 kb on - strand at 645.017 kb on - strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand at 645.305 kb on + strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand at 645.309 kb on - strand, within HGI48_RS03015 at 645.487 kb on - strand at 645.487 kb on - strand at 645.523 kb on - strand at 645.525 kb on + strand at 645.525 kb on + strand at 645.526 kb on - strand at 645.537 kb on + strand at 645.538 kb on - strand at 645.538 kb on - strand at 645.541 kb on + strand at 645.542 kb on - strand at 645.542 kb on - strand at 645.554 kb on + strand, within HGI48_RS03020 at 645.555 kb on - strand, within HGI48_RS03020 at 645.565 kb on + strand, within HGI48_RS03020 at 645.565 kb on + strand, within HGI48_RS03020 at 645.641 kb on + strand, within HGI48_RS03020 at 645.641 kb on + strand at 645.648 kb on - strand, within HGI48_RS03020 at 645.648 kb on - strand, within HGI48_RS03020 at 645.674 kb on + strand, within HGI48_RS03020 at 645.674 kb on + strand at 645.675 kb on - strand, within HGI48_RS03020 at 645.694 kb on - strand at 645.729 kb on - strand, within HGI48_RS03020 at 645.915 kb on - strand at 645.921 kb on + strand at 645.921 kb on + strand at 645.921 kb on + strand at 645.922 kb on - strand at 645.922 kb on - strand at 645.922 kb on - strand at 645.998 kb on + strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 645.999 kb on - strand, within HGI48_RS03025 at 646.018 kb on + strand at 646.030 kb on + strand, within HGI48_RS03025 at 646.030 kb on + strand at 646.031 kb on - strand, within HGI48_RS03025 at 646.115 kb on + strand, within HGI48_RS03025 at 646.115 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.153 kb on + strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.154 kb on - strand, within HGI48_RS03025 at 646.167 kb on + strand, within HGI48_RS03025 at 646.293 kb on + strand at 646.294 kb on - strand, within HGI48_RS03025 at 646.294 kb on - strand, within HGI48_RS03025 at 646.395 kb on + strand at 646.395 kb on + strand at 646.395 kb on + strand at 646.395 kb on + strand at 646.395 kb on + strand at 646.396 kb on - strand at 646.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 644,000 - -1.6 644,000 - -0.4 644,207 + -0.8 644,207 + +1.4 644,208 - +0.6 644,208 - +0.1 644,208 - -0.5 644,228 + -0.3 644,229 - -0.7 644,229 - -1.2 644,502 + +1.0 644,503 - -1.3 644,717 - HGI48_RS03010 0.46 -0.1 644,728 + HGI48_RS03010 0.48 -1.0 644,728 + HGI48_RS03010 0.48 -0.1 644,729 - HGI48_RS03010 0.48 +1.0 644,729 - HGI48_RS03010 0.48 -0.0 644,729 - +1.1 644,746 + +1.7 644,746 + HGI48_RS03010 0.52 -0.4 644,746 + HGI48_RS03010 0.52 +0.1 644,746 + +1.7 644,746 + HGI48_RS03010 0.52 -0.2 644,746 + HGI48_RS03010 0.52 +0.7 644,747 - HGI48_RS03010 0.52 +0.3 644,747 - HGI48_RS03010 0.52 +0.4 644,747 - -0.9 644,747 - HGI48_RS03010 0.52 -0.9 644,747 - HGI48_RS03010 0.52 +1.0 644,748 + HGI48_RS03010 0.52 +1.3 644,748 + HGI48_RS03010 0.52 +0.7 644,841 - HGI48_RS03010 0.71 -0.4 644,853 + HGI48_RS03010 0.74 +1.3 644,880 + HGI48_RS03010 0.79 -0.1 644,880 + HGI48_RS03010 0.79 +0.7 644,880 + HGI48_RS03010 0.79 +0.3 644,881 - HGI48_RS03010 0.79 -0.5 644,953 + -0.9 644,953 + +0.1 644,954 - -0.0 645,016 + -0.3 645,016 + +2.5 645,016 + -0.1 645,016 + -1.1 645,016 + +0.5 645,017 - -0.3 645,017 - +1.4 645,017 - -0.4 645,305 + HGI48_RS03015 0.72 +0.4 645,305 + HGI48_RS03015 0.72 -0.6 645,305 + HGI48_RS03015 0.72 +0.1 645,305 + -0.3 645,305 + HGI48_RS03015 0.72 -0.3 645,305 + +1.7 645,305 + +1.1 645,305 + HGI48_RS03015 0.72 -0.3 645,305 + HGI48_RS03015 0.72 +1.0 645,306 - HGI48_RS03015 0.73 -0.3 645,306 - HGI48_RS03015 0.73 -0.4 645,306 - -0.9 645,306 - HGI48_RS03015 0.73 +0.4 645,306 - +0.7 645,309 - HGI48_RS03015 0.73 -1.2 645,487 - +1.7 645,487 - +0.7 645,523 - -0.3 645,525 + +0.8 645,525 + -0.9 645,526 - +0.1 645,537 + +0.1 645,538 - -0.3 645,538 - -0.3 645,541 + +0.1 645,542 - +1.4 645,542 - -0.3 645,554 + HGI48_RS03020 0.11 -1.5 645,555 - HGI48_RS03020 0.11 +0.5 645,565 + HGI48_RS03020 0.14 -1.4 645,565 + HGI48_RS03020 0.14 +0.0 645,641 + HGI48_RS03020 0.31 +0.4 645,641 + -0.9 645,648 - HGI48_RS03020 0.33 -0.7 645,648 - HGI48_RS03020 0.33 -0.0 645,674 + HGI48_RS03020 0.39 -1.3 645,674 + +0.1 645,675 - HGI48_RS03020 0.39 -1.0 645,694 - -0.9 645,729 - HGI48_RS03020 0.52 -0.9 645,915 - -2.3 645,921 + +0.3 645,921 + -0.9 645,921 + +0.3 645,922 - +1.4 645,922 - -0.3 645,922 - +0.5 645,998 + HGI48_RS03025 0.15 +1.0 645,999 - HGI48_RS03025 0.16 -0.7 645,999 - HGI48_RS03025 0.16 +0.5 645,999 - HGI48_RS03025 0.16 +0.5 645,999 - HGI48_RS03025 0.16 -0.6 646,018 + +1.9 646,030 + HGI48_RS03025 0.23 -0.9 646,030 + -0.9 646,031 - HGI48_RS03025 0.23 -2.1 646,115 + HGI48_RS03025 0.42 -0.3 646,115 + HGI48_RS03025 0.42 -0.9 646,153 + HGI48_RS03025 0.50 -0.5 646,153 + HGI48_RS03025 0.50 +0.1 646,153 + +2.0 646,153 + HGI48_RS03025 0.50 -1.9 646,153 + HGI48_RS03025 0.50 -0.4 646,153 + HGI48_RS03025 0.50 +0.1 646,154 - HGI48_RS03025 0.50 -0.5 646,154 - HGI48_RS03025 0.50 -0.7 646,154 - HGI48_RS03025 0.50 +1.3 646,154 - HGI48_RS03025 0.50 -1.6 646,154 - HGI48_RS03025 0.50 +0.0 646,167 + HGI48_RS03025 0.53 +1.0 646,293 + +2.3 646,294 - HGI48_RS03025 0.82 -0.0 646,294 - HGI48_RS03025 0.82 -1.9 646,395 + -0.9 646,395 + -1.5 646,395 + -1.0 646,395 + -0.1 646,395 + -0.1 646,396 - +2.3 646,419 + -0.1
Or see this region's nucleotide sequence