Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02990 and HGI48_RS02995 are separated by 92 nucleotides HGI48_RS02995 and HGI48_RS03000 overlap by 1 nucleotides HGI48_RS03000 and HGI48_RS03005 are separated by 3 nucleotides HGI48_RS03005 and HGI48_RS03010 overlap by 14 nucleotides HGI48_RS03010 and HGI48_RS03015 overlap by 4 nucleotides
HGI48_RS02990: HGI48_RS02990 - hypothetical protein, at 642,782 to 643,444
_RS02990
HGI48_RS02995: HGI48_RS02995 - head completion/stabilization protein, at 643,537 to 644,001
_RS02995
HGI48_RS03000: HGI48_RS03000 - tail protein X, at 644,001 to 644,204
_RS03000
HGI48_RS03005: HGI48_RS03005 - phage holin family protein, at 644,208 to 644,504
_RS03005
HGI48_RS03010: HGI48_RS03010 - glycoside hydrolase family 104 protein, at 644,491 to 644,982
_RS03010
HGI48_RS03015: HGI48_RS03015 - LysB family phage lysis regulatory protein, at 644,979 to 645,428
_RS03015
Position (kb) 644
645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 643.290 kb on - strand, within HGI48_RS02990 at 643.290 kb on - strand, within HGI48_RS02990 at 643.443 kb on - strand at 643.585 kb on - strand, within HGI48_RS02995 at 643.752 kb on + strand, within HGI48_RS02995 at 643.752 kb on + strand, within HGI48_RS02995 at 643.769 kb on + strand, within HGI48_RS02995 at 643.770 kb on - strand, within HGI48_RS02995 at 643.770 kb on - strand, within HGI48_RS02995 at 643.770 kb on - strand, within HGI48_RS02995 at 643.870 kb on + strand, within HGI48_RS02995 at 643.871 kb on - strand, within HGI48_RS02995 at 644.000 kb on - strand at 644.000 kb on - strand at 644.207 kb on + strand at 644.207 kb on + strand at 644.208 kb on - strand at 644.208 kb on - strand at 644.208 kb on - strand at 644.228 kb on + strand at 644.229 kb on - strand at 644.229 kb on - strand at 644.502 kb on + strand at 644.503 kb on - strand at 644.717 kb on - strand, within HGI48_RS03010 at 644.728 kb on + strand, within HGI48_RS03010 at 644.728 kb on + strand, within HGI48_RS03010 at 644.729 kb on - strand, within HGI48_RS03010 at 644.729 kb on - strand, within HGI48_RS03010 at 644.729 kb on - strand at 644.746 kb on + strand at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.748 kb on + strand, within HGI48_RS03010 at 644.748 kb on + strand, within HGI48_RS03010 at 644.841 kb on - strand, within HGI48_RS03010 at 644.853 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.881 kb on - strand, within HGI48_RS03010 at 644.953 kb on + strand at 644.953 kb on + strand at 644.954 kb on - strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.016 kb on + strand at 645.017 kb on - strand at 645.017 kb on - strand at 645.017 kb on - strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand at 645.305 kb on + strand at 645.305 kb on + strand, within HGI48_RS03015 at 645.305 kb on + strand, within HGI48_RS03015 at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand at 645.306 kb on - strand, within HGI48_RS03015 at 645.306 kb on - strand at 645.309 kb on - strand, within HGI48_RS03015 at 645.487 kb on - strand at 645.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 643,290 - HGI48_RS02990 0.77 -1.6 643,290 - HGI48_RS02990 0.77 -0.5 643,443 - +0.5 643,585 - HGI48_RS02995 0.10 +0.7 643,752 + HGI48_RS02995 0.46 -1.6 643,752 + HGI48_RS02995 0.46 -1.9 643,769 + HGI48_RS02995 0.50 +1.3 643,770 - HGI48_RS02995 0.50 -1.1 643,770 - HGI48_RS02995 0.50 +0.2 643,770 - HGI48_RS02995 0.50 -0.5 643,870 + HGI48_RS02995 0.72 +0.7 643,871 - HGI48_RS02995 0.72 -0.4 644,000 - -1.6 644,000 - -0.4 644,207 + -0.8 644,207 + +1.4 644,208 - +0.6 644,208 - +0.1 644,208 - -0.5 644,228 + -0.3 644,229 - -0.7 644,229 - -1.2 644,502 + +1.0 644,503 - -1.3 644,717 - HGI48_RS03010 0.46 -0.1 644,728 + HGI48_RS03010 0.48 -1.0 644,728 + HGI48_RS03010 0.48 -0.1 644,729 - HGI48_RS03010 0.48 +1.0 644,729 - HGI48_RS03010 0.48 -0.0 644,729 - +1.1 644,746 + +1.7 644,746 + HGI48_RS03010 0.52 -0.4 644,746 + HGI48_RS03010 0.52 +0.1 644,746 + +1.7 644,746 + HGI48_RS03010 0.52 -0.2 644,746 + HGI48_RS03010 0.52 +0.7 644,747 - HGI48_RS03010 0.52 +0.3 644,747 - HGI48_RS03010 0.52 +0.4 644,747 - -0.9 644,747 - HGI48_RS03010 0.52 -0.9 644,747 - HGI48_RS03010 0.52 +1.0 644,748 + HGI48_RS03010 0.52 +1.3 644,748 + HGI48_RS03010 0.52 +0.7 644,841 - HGI48_RS03010 0.71 -0.4 644,853 + HGI48_RS03010 0.74 +1.3 644,880 + HGI48_RS03010 0.79 -0.1 644,880 + HGI48_RS03010 0.79 +0.7 644,880 + HGI48_RS03010 0.79 +0.3 644,881 - HGI48_RS03010 0.79 -0.5 644,953 + -0.9 644,953 + +0.1 644,954 - -0.0 645,016 + -0.3 645,016 + +2.5 645,016 + -0.1 645,016 + -1.1 645,016 + +0.5 645,017 - -0.3 645,017 - +1.4 645,017 - -0.4 645,305 + HGI48_RS03015 0.72 +0.4 645,305 + HGI48_RS03015 0.72 -0.6 645,305 + HGI48_RS03015 0.72 +0.1 645,305 + -0.3 645,305 + HGI48_RS03015 0.72 -0.3 645,305 + +1.7 645,305 + +1.1 645,305 + HGI48_RS03015 0.72 -0.3 645,305 + HGI48_RS03015 0.72 +1.0 645,306 - HGI48_RS03015 0.73 -0.3 645,306 - HGI48_RS03015 0.73 -0.4 645,306 - -0.9 645,306 - HGI48_RS03015 0.73 +0.4 645,306 - +0.7 645,309 - HGI48_RS03015 0.73 -1.2 645,487 - +1.7 645,487 - +0.7
Or see this region's nucleotide sequence