Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02925 and HGI48_RS02930 overlap by 4 nucleotides HGI48_RS02930 and HGI48_RS02935 overlap by 1 nucleotides HGI48_RS02935 and HGI48_RS02940 overlap by 4 nucleotides
HGI48_RS02925: HGI48_RS02925 - 3'-5' exoribonuclease, at 629,758 to 630,351
_RS02925
HGI48_RS02930: HGI48_RS02930 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 630,348 to 631,283
_RS02930
HGI48_RS02935: HGI48_RS02935 - DNA cytosine methyltransferase, at 631,283 to 632,200
_RS02935
HGI48_RS02940: HGI48_RS02940 - phosphoadenosine phosphosulfate reductase family protein, at 632,197 to 633,201
_RS02940
Position (kb) 631
632
633 Strain fitness (log2 ratio) -2
-1
0
1
2 at 630.319 kb on - strand at 630.319 kb on - strand at 630.319 kb on - strand at 630.362 kb on + strand at 630.363 kb on - strand at 630.363 kb on - strand at 630.363 kb on - strand at 630.474 kb on - strand, within HGI48_RS02930 at 630.490 kb on - strand at 630.490 kb on - strand, within HGI48_RS02930 at 630.490 kb on - strand, within HGI48_RS02930 at 630.494 kb on - strand, within HGI48_RS02930 at 630.609 kb on + strand, within HGI48_RS02930 at 630.609 kb on + strand, within HGI48_RS02930 at 630.609 kb on + strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.632 kb on + strand, within HGI48_RS02930 at 630.633 kb on - strand, within HGI48_RS02930 at 630.633 kb on - strand, within HGI48_RS02930 at 630.674 kb on - strand, within HGI48_RS02930 at 630.682 kb on - strand, within HGI48_RS02930 at 630.718 kb on - strand, within HGI48_RS02930 at 630.718 kb on - strand, within HGI48_RS02930 at 630.718 kb on - strand, within HGI48_RS02930 at 630.757 kb on - strand, within HGI48_RS02930 at 630.768 kb on + strand, within HGI48_RS02930 at 630.769 kb on - strand, within HGI48_RS02930 at 630.831 kb on - strand, within HGI48_RS02930 at 630.857 kb on - strand, within HGI48_RS02930 at 630.857 kb on - strand, within HGI48_RS02930 at 630.857 kb on - strand at 630.885 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 631.066 kb on - strand, within HGI48_RS02930 at 631.140 kb on - strand, within HGI48_RS02930 at 631.237 kb on - strand at 631.299 kb on - strand at 631.299 kb on - strand at 631.299 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.418 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand at 631.467 kb on - strand, within HGI48_RS02935 at 631.581 kb on + strand, within HGI48_RS02935 at 631.581 kb on + strand, within HGI48_RS02935 at 631.582 kb on - strand at 631.582 kb on - strand, within HGI48_RS02935 at 631.651 kb on + strand, within HGI48_RS02935 at 631.680 kb on + strand at 631.681 kb on - strand at 631.681 kb on - strand, within HGI48_RS02935 at 631.681 kb on - strand, within HGI48_RS02935 at 631.681 kb on - strand, within HGI48_RS02935 at 631.870 kb on + strand, within HGI48_RS02935 at 631.871 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 632.178 kb on - strand at 632.178 kb on - strand at 632.201 kb on + strand at 632.201 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.301 kb on - strand, within HGI48_RS02940 at 632.366 kb on - strand, within HGI48_RS02940 at 632.399 kb on + strand, within HGI48_RS02940 at 632.400 kb on - strand at 632.400 kb on - strand, within HGI48_RS02940 at 632.400 kb on - strand, within HGI48_RS02940 at 632.400 kb on - strand, within HGI48_RS02940 at 632.485 kb on - strand, within HGI48_RS02940 at 632.596 kb on - strand, within HGI48_RS02940 at 632.596 kb on - strand, within HGI48_RS02940 at 632.637 kb on - strand, within HGI48_RS02940 at 632.653 kb on - strand at 632.672 kb on - strand, within HGI48_RS02940 at 632.672 kb on - strand, within HGI48_RS02940 at 632.872 kb on - strand, within HGI48_RS02940 at 632.887 kb on - strand, within HGI48_RS02940 at 632.887 kb on - strand, within HGI48_RS02940 at 632.927 kb on + strand at 632.928 kb on - strand, within HGI48_RS02940 at 633.057 kb on - strand at 633.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 630,319 - +0.4 630,319 - +1.3 630,319 - +0.7 630,362 + -0.9 630,363 - -0.3 630,363 - +0.9 630,363 - -1.4 630,474 - HGI48_RS02930 0.13 -0.5 630,490 - +1.7 630,490 - HGI48_RS02930 0.15 -0.3 630,490 - HGI48_RS02930 0.15 -0.4 630,494 - HGI48_RS02930 0.16 -2.3 630,609 + HGI48_RS02930 0.28 +0.3 630,609 + HGI48_RS02930 0.28 +1.1 630,609 + HGI48_RS02930 0.28 -1.9 630,610 - HGI48_RS02930 0.28 -0.6 630,610 - +1.4 630,610 - HGI48_RS02930 0.28 -0.8 630,610 - HGI48_RS02930 0.28 +1.7 630,610 - HGI48_RS02930 0.28 -0.5 630,610 - HGI48_RS02930 0.28 +0.4 630,610 - HGI48_RS02930 0.28 -0.6 630,632 + HGI48_RS02930 0.30 +0.4 630,633 - HGI48_RS02930 0.30 +0.7 630,633 - HGI48_RS02930 0.30 -0.9 630,674 - HGI48_RS02930 0.35 -0.3 630,682 - HGI48_RS02930 0.36 -1.9 630,718 - HGI48_RS02930 0.40 +0.3 630,718 - HGI48_RS02930 0.40 -0.4 630,718 - HGI48_RS02930 0.40 -0.3 630,757 - HGI48_RS02930 0.44 -0.5 630,768 + HGI48_RS02930 0.45 -0.6 630,769 - HGI48_RS02930 0.45 -2.3 630,831 - HGI48_RS02930 0.52 -1.6 630,857 - HGI48_RS02930 0.54 -0.1 630,857 - HGI48_RS02930 0.54 +0.0 630,857 - +1.3 630,885 - HGI48_RS02930 0.57 -2.0 630,889 - HGI48_RS02930 0.58 -0.9 630,889 - HGI48_RS02930 0.58 +0.6 630,889 - HGI48_RS02930 0.58 -0.9 630,889 - HGI48_RS02930 0.58 +0.7 631,066 - HGI48_RS02930 0.77 -0.3 631,140 - HGI48_RS02930 0.85 -0.0 631,237 - +0.4 631,299 - -0.3 631,299 - -1.1 631,299 - -0.3 631,302 - -0.3 631,302 - -0.2 631,302 - +0.3 631,302 - +0.0 631,302 - -0.0 631,418 - HGI48_RS02935 0.15 -2.1 631,467 - HGI48_RS02935 0.20 -1.8 631,467 - HGI48_RS02935 0.20 +1.4 631,467 - -0.9 631,467 - HGI48_RS02935 0.20 +0.8 631,581 + HGI48_RS02935 0.32 -1.9 631,581 + HGI48_RS02935 0.32 +0.7 631,582 - -0.9 631,582 - HGI48_RS02935 0.33 -0.8 631,651 + HGI48_RS02935 0.40 +1.3 631,680 + -0.3 631,681 - +1.9 631,681 - HGI48_RS02935 0.43 -0.1 631,681 - HGI48_RS02935 0.43 -0.5 631,681 - HGI48_RS02935 0.43 +1.2 631,870 + HGI48_RS02935 0.64 -1.7 631,871 - HGI48_RS02935 0.64 +1.2 631,973 - HGI48_RS02935 0.75 +1.0 631,973 - HGI48_RS02935 0.75 -1.8 631,973 - HGI48_RS02935 0.75 +1.9 631,973 - HGI48_RS02935 0.75 -1.1 631,973 - HGI48_RS02935 0.75 +0.1 631,973 - HGI48_RS02935 0.75 +0.4 631,973 - HGI48_RS02935 0.75 +1.6 632,178 - +0.9 632,178 - +0.2 632,201 + -0.1 632,201 + -0.3 632,237 + -0.3 632,237 + +1.0 632,237 + +0.1 632,237 + +0.7 632,238 - +1.0 632,238 - -0.7 632,238 - -0.1 632,238 - +1.3 632,238 - -1.9 632,301 - HGI48_RS02940 0.10 -1.0 632,366 - HGI48_RS02940 0.17 -1.6 632,399 + HGI48_RS02940 0.20 -2.1 632,400 - +1.3 632,400 - HGI48_RS02940 0.20 -0.8 632,400 - HGI48_RS02940 0.20 -0.3 632,400 - HGI48_RS02940 0.20 -1.6 632,485 - HGI48_RS02940 0.29 -2.1 632,596 - HGI48_RS02940 0.40 -0.6 632,596 - HGI48_RS02940 0.40 +1.5 632,637 - HGI48_RS02940 0.44 +0.2 632,653 - +0.1 632,672 - HGI48_RS02940 0.47 -0.3 632,672 - HGI48_RS02940 0.47 +0.7 632,872 - HGI48_RS02940 0.67 -1.8 632,887 - HGI48_RS02940 0.69 -0.6 632,887 - HGI48_RS02940 0.69 -1.0 632,927 + -0.9 632,928 - HGI48_RS02940 0.73 -0.7 633,057 - +1.3 633,109 - -0.3
Or see this region's nucleotide sequence