Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02755 and HGI48_RS02760 are separated by 79 nucleotides HGI48_RS02760 and HGI48_RS02765 are separated by 277 nucleotides HGI48_RS02765 and HGI48_RS02770 overlap by 4 nucleotides HGI48_RS02770 and HGI48_RS02775 are separated by 3 nucleotides HGI48_RS02775 and HGI48_RS02780 are separated by 183 nucleotides
HGI48_RS02755: HGI48_RS02755 - glutathione S-transferase family protein, at 594,889 to 595,890
_RS02755
HGI48_RS02760: HGI48_RS02760 - DoxX family protein, at 595,970 to 596,365
_RS02760
HGI48_RS02765: HGI48_RS02765 - YqjK-like family protein, at 596,643 to 596,948
_RS02765
HGI48_RS02770: HGI48_RS02770 - phage holin family protein, at 596,945 to 597,343
_RS02770
HGI48_RS02775: HGI48_RS02775 - DUF883 domain-containing protein, at 597,347 to 597,652
_RS02775
HGI48_RS02780: HGI48_RS02780 - EnvZ/OmpR regulon moderator MzrA, at 597,836 to 598,183
_RS02780
Position (kb) 596
597 Strain fitness (log2 ratio) -2
-1
0
1
2 at 595.714 kb on + strand, within HGI48_RS02755 at 595.714 kb on + strand, within HGI48_RS02755 at 595.715 kb on - strand, within HGI48_RS02755 at 595.718 kb on + strand at 595.718 kb on + strand, within HGI48_RS02755 at 595.718 kb on + strand, within HGI48_RS02755 at 595.718 kb on + strand, within HGI48_RS02755 at 595.718 kb on + strand, within HGI48_RS02755 at 595.718 kb on + strand, within HGI48_RS02755 at 595.719 kb on - strand, within HGI48_RS02755 at 595.719 kb on - strand, within HGI48_RS02755 at 595.719 kb on - strand, within HGI48_RS02755 at 595.719 kb on - strand, within HGI48_RS02755 at 595.719 kb on - strand, within HGI48_RS02755 at 595.719 kb on - strand, within HGI48_RS02755 at 595.728 kb on - strand at 595.850 kb on + strand at 595.867 kb on + strand at 595.867 kb on + strand at 595.868 kb on - strand at 595.868 kb on - strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.879 kb on + strand at 595.880 kb on - strand at 595.880 kb on - strand at 595.880 kb on - strand at 595.880 kb on - strand at 595.880 kb on - strand at 595.880 kb on - strand at 595.882 kb on + strand at 595.910 kb on + strand at 595.957 kb on - strand at 595.968 kb on + strand at 595.968 kb on + strand at 595.969 kb on - strand at 595.969 kb on - strand at 595.969 kb on - strand at 595.969 kb on - strand at 595.969 kb on - strand at 595.971 kb on + strand at 596.033 kb on + strand, within HGI48_RS02760 at 596.033 kb on + strand, within HGI48_RS02760 at 596.033 kb on + strand, within HGI48_RS02760 at 596.033 kb on + strand, within HGI48_RS02760 at 596.037 kb on + strand, within HGI48_RS02760 at 596.037 kb on + strand, within HGI48_RS02760 at 596.038 kb on - strand, within HGI48_RS02760 at 596.251 kb on + strand, within HGI48_RS02760 at 596.252 kb on - strand, within HGI48_RS02760 at 596.252 kb on - strand, within HGI48_RS02760 at 596.252 kb on - strand, within HGI48_RS02760 at 596.252 kb on - strand, within HGI48_RS02760 at 596.252 kb on - strand, within HGI48_RS02760 at 596.252 kb on - strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.253 kb on + strand, within HGI48_RS02760 at 596.254 kb on - strand at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand, within HGI48_RS02760 at 596.254 kb on - strand, within HGI48_RS02760 at 596.379 kb on + strand at 596.379 kb on + strand at 596.434 kb on + strand at 596.445 kb on + strand at 596.446 kb on - strand at 596.463 kb on + strand at 596.464 kb on - strand at 596.466 kb on + strand at 596.467 kb on - strand at 596.510 kb on + strand at 596.541 kb on + strand at 596.542 kb on - strand at 596.544 kb on + strand at 596.545 kb on - strand at 596.572 kb on - strand at 596.595 kb on + strand at 596.596 kb on - strand at 596.673 kb on + strand at 596.674 kb on - strand, within HGI48_RS02765 at 596.685 kb on + strand, within HGI48_RS02765 at 596.754 kb on + strand, within HGI48_RS02765 at 596.755 kb on - strand, within HGI48_RS02765 at 597.104 kb on + strand, within HGI48_RS02770 at 597.105 kb on - strand, within HGI48_RS02770 at 597.234 kb on - strand, within HGI48_RS02770 at 597.234 kb on - strand, within HGI48_RS02770 at 597.234 kb on - strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.284 kb on - strand, within HGI48_RS02770 at 597.284 kb on - strand, within HGI48_RS02770 at 597.290 kb on + strand, within HGI48_RS02770 at 597.290 kb on + strand, within HGI48_RS02770 at 597.291 kb on - strand, within HGI48_RS02770 at 597.291 kb on - strand at 597.348 kb on + strand at 597.470 kb on - strand, within HGI48_RS02775 at 597.562 kb on + strand, within HGI48_RS02775 at 597.562 kb on + strand, within HGI48_RS02775 at 597.579 kb on - strand, within HGI48_RS02775 at 597.666 kb on + strand at 597.667 kb on - strand at 597.667 kb on - strand at 597.667 kb on - strand at 597.687 kb on - strand at 597.690 kb on + strand at 597.691 kb on - strand at 597.691 kb on - strand at 597.692 kb on + strand at 597.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 595,714 + HGI48_RS02755 0.82 -0.5 595,714 + HGI48_RS02755 0.82 +2.3 595,715 - HGI48_RS02755 0.82 -1.3 595,718 + +0.7 595,718 + HGI48_RS02755 0.83 +0.1 595,718 + HGI48_RS02755 0.83 +1.3 595,718 + HGI48_RS02755 0.83 -0.3 595,718 + HGI48_RS02755 0.83 -0.6 595,718 + HGI48_RS02755 0.83 +1.0 595,719 - HGI48_RS02755 0.83 +0.1 595,719 - HGI48_RS02755 0.83 -0.4 595,719 - HGI48_RS02755 0.83 -0.7 595,719 - HGI48_RS02755 0.83 +0.5 595,719 - HGI48_RS02755 0.83 -0.3 595,719 - HGI48_RS02755 0.83 +1.3 595,728 - +0.1 595,850 + +2.3 595,867 + -1.1 595,867 + -0.1 595,868 - -0.5 595,868 - +0.5 595,879 + -0.7 595,879 + +0.1 595,879 + +0.3 595,879 + -0.9 595,879 + +0.3 595,879 + -0.3 595,879 + +0.7 595,879 + +1.3 595,879 + -0.3 595,880 - -0.0 595,880 - -0.7 595,880 - -2.6 595,880 - -1.1 595,880 - +0.7 595,880 - -2.1 595,882 + +1.1 595,910 + -1.6 595,957 - +0.6 595,968 + -0.6 595,968 + +1.7 595,969 - +0.2 595,969 - -0.5 595,969 - -0.9 595,969 - -2.1 595,969 - +0.1 595,971 + -1.0 596,033 + HGI48_RS02760 0.16 +0.0 596,033 + HGI48_RS02760 0.16 -1.9 596,033 + HGI48_RS02760 0.16 +0.2 596,033 + HGI48_RS02760 0.16 +0.2 596,037 + HGI48_RS02760 0.17 +0.5 596,037 + HGI48_RS02760 0.17 +0.3 596,038 - HGI48_RS02760 0.17 +0.5 596,251 + HGI48_RS02760 0.71 -0.6 596,252 - HGI48_RS02760 0.71 +0.5 596,252 - HGI48_RS02760 0.71 +0.1 596,252 - HGI48_RS02760 0.71 -0.9 596,252 - HGI48_RS02760 0.71 +0.7 596,252 - HGI48_RS02760 0.71 -0.7 596,252 - HGI48_RS02760 0.71 -0.3 596,253 + HGI48_RS02760 0.71 +0.5 596,253 + HGI48_RS02760 0.71 +1.3 596,253 + HGI48_RS02760 0.71 +1.0 596,253 + HGI48_RS02760 0.71 -1.9 596,253 + HGI48_RS02760 0.71 -1.3 596,253 + HGI48_RS02760 0.71 -0.1 596,253 + HGI48_RS02760 0.71 -2.3 596,253 + HGI48_RS02760 0.71 -0.8 596,253 + HGI48_RS02760 0.71 -1.4 596,253 + HGI48_RS02760 0.71 +1.1 596,253 + HGI48_RS02760 0.71 -0.6 596,254 - +1.3 596,254 - HGI48_RS02760 0.72 -0.4 596,254 - -0.9 596,254 - HGI48_RS02760 0.72 -0.1 596,254 - HGI48_RS02760 0.72 -0.0 596,254 - HGI48_RS02760 0.72 +0.3 596,254 - HGI48_RS02760 0.72 +1.4 596,254 - HGI48_RS02760 0.72 +0.6 596,254 - HGI48_RS02760 0.72 -0.3 596,254 - HGI48_RS02760 0.72 -0.9 596,254 - HGI48_RS02760 0.72 -0.1 596,379 + -0.1 596,379 + +0.9 596,434 + -0.4 596,445 + +0.6 596,446 - -0.0 596,463 + +0.4 596,464 - +0.3 596,466 + -0.6 596,467 - -0.0 596,510 + -0.3 596,541 + -0.9 596,542 - -0.3 596,544 + +1.0 596,545 - +0.6 596,572 - -0.1 596,595 + +2.6 596,596 - +0.5 596,673 + +0.1 596,674 - HGI48_RS02765 0.10 -1.0 596,685 + HGI48_RS02765 0.14 -1.0 596,754 + HGI48_RS02765 0.36 -0.5 596,755 - HGI48_RS02765 0.37 -0.9 597,104 + HGI48_RS02770 0.40 -0.3 597,105 - HGI48_RS02770 0.40 -0.3 597,234 - HGI48_RS02770 0.72 -1.9 597,234 - HGI48_RS02770 0.72 +0.0 597,234 - HGI48_RS02770 0.72 -1.9 597,283 + HGI48_RS02770 0.85 -0.6 597,283 + HGI48_RS02770 0.85 +0.0 597,283 + HGI48_RS02770 0.85 -0.9 597,283 + HGI48_RS02770 0.85 +0.4 597,284 - HGI48_RS02770 0.85 -0.1 597,284 - HGI48_RS02770 0.85 -2.7 597,290 + HGI48_RS02770 0.86 -1.0 597,290 + HGI48_RS02770 0.86 +0.2 597,291 - HGI48_RS02770 0.87 +0.8 597,291 - +1.5 597,348 + -0.9 597,470 - HGI48_RS02775 0.40 +0.7 597,562 + HGI48_RS02775 0.70 -0.3 597,562 + HGI48_RS02775 0.70 -1.0 597,579 - HGI48_RS02775 0.76 -1.0 597,666 + -0.4 597,667 - -0.3 597,667 - -0.1 597,667 - -1.3 597,687 - -0.5 597,690 + +1.3 597,691 - +0.6 597,691 - -0.3 597,692 + -0.0 597,829 - +0.9
Or see this region's nucleotide sequence