Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02715 and HGI48_RS02720 are separated by 21 nucleotides HGI48_RS02720 and HGI48_RS02725 are separated by 53 nucleotides HGI48_RS02725 and HGI48_RS02730 are separated by 129 nucleotides HGI48_RS02730 and HGI48_RS02735 are separated by 109 nucleotides
HGI48_RS02715: HGI48_RS02715 - chorismate lyase, at 587,105 to 587,620
_RS02715
HGI48_RS02720: HGI48_RS02720 - 4-hydroxybenzoate octaprenyltransferase, at 587,642 to 588,505
_RS02720
HGI48_RS02725: HGI48_RS02725 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 588,559 to 591,042
_RS02725
HGI48_RS02730: HGI48_RS02730 - diacylglycerol kinase, at 591,172 to 591,537
_RS02730
HGI48_RS02735: HGI48_RS02735 - repressor LexA, at 591,647 to 592,258
_RS02735
Position (kb) 588
589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 587.594 kb on + strand at 587.594 kb on + strand at 588.503 kb on + strand at 588.504 kb on - strand at 588.527 kb on - strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.566 kb on - strand at 588.566 kb on - strand at 588.566 kb on - strand at 588.566 kb on - strand at 591.101 kb on + strand at 591.156 kb on + strand at 591.167 kb on + strand at 591.168 kb on - strand at 591.199 kb on - strand at 591.297 kb on + strand, within HGI48_RS02730 at 591.301 kb on - strand, within HGI48_RS02730 at 591.427 kb on + strand, within HGI48_RS02730 at 591.473 kb on + strand, within HGI48_RS02730 at 591.548 kb on - strand at 591.605 kb on + strand at 591.606 kb on - strand at 591.606 kb on - strand at 591.606 kb on - strand at 591.606 kb on - strand at 591.607 kb on + strand at 591.608 kb on - strand at 591.608 kb on - strand at 591.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 587,594 + -1.1 587,594 + -0.5 588,503 + -1.0 588,504 - -0.1 588,527 - +1.5 588,565 + -1.9 588,565 + -1.9 588,565 + -0.0 588,565 + -1.6 588,566 - -1.0 588,566 - -0.0 588,566 - -0.9 588,566 - -0.9 591,101 + -1.1 591,156 + +1.1 591,167 + -1.6 591,168 - +0.4 591,199 - -0.6 591,297 + HGI48_RS02730 0.34 +1.3 591,301 - HGI48_RS02730 0.35 +0.3 591,427 + HGI48_RS02730 0.70 -1.1 591,473 + HGI48_RS02730 0.82 +0.3 591,548 - -0.3 591,605 + +0.4 591,606 - +0.4 591,606 - -0.1 591,606 - +0.7 591,606 - +0.1 591,607 + -0.6 591,608 - -1.3 591,608 - -1.2 591,608 - +0.1
Or see this region's nucleotide sequence